Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Reverse (-)

4327853 .. 4332384

Gene Structure 4532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G026400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGAAGAAGACAATATTAACCAGACTCTTTTGACAAAAGAGAAGAGTGTACAAGAAAATGGTGTTGAGGATAAGGAGGAGGATGAGAATTTGCCACTCAAAAACAGGGTATGGAGGGAAACCAAGACGATGTGGGTGGTGGCTGGCCCTGCTATCTTCACCAGAGTTTCCACATTTGGAATAAATGTCATCAGTCAAGCCTTCATTGGTCACATTGGCTCTACACAACTAGCTGCATTTTCGCTTGTATTCACCGTACTTGTCAGGTTCGCAAATGGCATCTTGCTGGGCATGGCTAGTGCGCTAGAAACTCTTTGTGGTCAATCATACGGTGCAAAACAGTACCACATGCTTGGAATACATCTTCAGCGGTCATGGGTAGTTCTGTTTTTTAGCACATTGCTCCTCATTCCTCTTTGCATCTTTACAACCCCGATTTTAGAGGCATTAGGCCAAAAAGATAATATTTCAGAAGAGGCAGGATATATTTCTCTATGGGTGATCCCTGTGCTTTTTGCTTTTGTTGTATCCTTTACCTGCCAAATGTACTTACAAGCACAGAGCAAAAATATGATCATTGCTTATGTGTCAGCAATTTCAATTGCAATCCATATCCTCCTTTCATGGCTTTTTACTGTGAAATTTAAGTGGGGGGTTGCCGGTGTAATGGTGTCGACTATTATAGCATATTGGCTACCCAACATTGGTCAGCTGTTGTTTGTTCTATGTGGAGGATGCCCGGGAACGTGGACAGGCTTCTCAACCTTAGCTTTTACAGATCTCTGGGATGTCCTCAAGCTGTCTCTGTCATCTGGTGTTATGCTTTGTCTTGAGCTTTGGTACAACACAATCTTGGTTCTTTTAACCGGAAACATGAAAAACGCAGAAGTCTCTATCGATGCTCTATCTATTTGCCTCAACATTGTTGGGTGGGAAATGATGATATCCCTTGGTTTCCTGGCTGCAGCAAGTGTACGAGTGTCGAATGAGCTTGGAAGAGGTAGTGCAAAAGCAGCAAAGTTCTCTGTTAAGGTTATTGTGTCGATATCATTTGCTATTGGGTTTGTGCTTTTCTTGCTTTTCCTATTCTTGAGGGAACGTCTTGCCTATATTTTCACCAACGATGAAGAGGTAGCTACAATGGTTTCCAACTTGTCACCTTTATTGGCATTCTCCATACTCTTGAACAGTGTTCAACCAGTGCTCTCAGGAGTTGCTCTCGGAGCTGGATGGCAGAGTATTGTAGCATATGTGAACTTAGCGTCCTATTACCTTATAGGGATTCCTGTTGGGGTGGTGCTTGGTTATCCTCTAAAGCTACAACTCGAAGGTGTTTGGATTGGAATGTTGTTTGGAACATTAGTCCAAACTGTTGTTTTACTCATACTGACCTATAAAACTGATTGGGATAAACAGGTAACAATAGCTCGTAGCCGTGTTAGCAAGTGGGAAGTAAGAGATATTGGAGAATCGAGCCCCGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

496

Amino Acids

54.59

Weight (kDa)

5.72

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	674
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	88, 641
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	6 cut(s)	51, 258, 344, 548, 842, 975
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	600, 1186, 1196
AjnI	CCWGG	1 cut(s)	957
AloI	GAACNNNNNNTCC	2 cut(s)	1247, 1279
Alw21I	GWGCWC	1 cut(s)	1206
Alw26I	GTCTC	3 cut(s)	807, 895, 1475
AlwI	GGATC	1 cut(s)	496
Ama87I	CYCGRG	2 cut(s)	739, 1478
AoxI	GGCC	2 cut(s)	145, 451
ApeKI	GCWGC	4 cut(s)	233, 962, 965, 1013
ApoI	RAATTY	2 cut(s)	88, 641
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	740, 741
AsuHPI	GGTGA	5 cut(s)	151, 244, 511, 1108, 1149
AvaI	CYCGRG	2 cut(s)	739, 1478
BanII	GRGCYC	1 cut(s)	1478
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	1206
BbvI	GCAGC	4 cut(s)	220, 949, 977, 1025
BccI	CCATC	1 cut(s)	1224
BceAI	ACGGC	1 cut(s)	1419
BciT130I	CCWGG	1 cut(s)	959
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	740, 741
BcoDI	GTCTC	3 cut(s)	807, 895, 1475
BfaI	CTAG	3 cut(s)	230, 297, 305
BfmI	CTRYAG	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	4 cut(s)	234, 963, 966, 1014
BlsI	GCNGC	4 cut(s)	235, 964, 967, 1015
Bme1390I	CCNGG	3 cut(s)	740, 741, 959
BmeT110I	CYCGRG	2 cut(s)	739, 1478
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	740, 741, 959
BmsI	GCATC	4 cut(s)	288, 429, 725, 889
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	1203, 1235
Bpu10I	CCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	3 cut(s)	779, 851, 1111
BpuMI	CCSGG	2 cut(s)	740, 741
Bsa29I	ATCGAT	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	739, 949
BsaWI	WCCGGW	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	1199
Bse3DI	GCAATG	2 cut(s)	398, 576
BseBI	CCWGG	1 cut(s)	959
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	2 cut(s)	739, 949
BseGI	GGATG	4 cut(s)	88, 740, 793, 1235
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	398, 576
BseMII	CTCAG	1 cut(s)	1221
BseNI	ACTGG	1 cut(s)	1199
BseRI	GAGGAG	2 cut(s)	92, 395
BseXI	GCAGC	4 cut(s)	220, 949, 977, 1025
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	147, 453
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	1 cut(s)	1206
BsiHKCI	CYCGRG	2 cut(s)	739, 1478
BsiSI	CCGG	3 cut(s)	660, 740, 867
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	3 cut(s)	807, 895, 1475
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	2 cut(s)	147, 453
BsoBI	CYCGRG	2 cut(s)	739, 1478
Bsp1286I	GDGCHC	2 cut(s)	1206, 1478
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	501, 573, 778
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	147, 453
BspCNI	CTCAG	1 cut(s)	1220
BspDI	ATCGAT	1 cut(s)	897
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	398, 576
BsrFI	RCCGGY	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	1199
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	739, 949
BssMI	GATC	3 cut(s)	501, 573, 778
BssT1I	CCWWGG	1 cut(s)	949
Bst2UI	CCWGG	1 cut(s)	959
Bst4CI	ACNGT	6 cut(s)	256, 332, 342, 637, 1190, 1372
Bst6I	CTCTTC	4 cut(s)	38, 468, 991, 1122
BstAUI	TGTACA	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	3 cut(s)	766, 1207, 1258
BstF5I	GGATG	4 cut(s)	88, 740, 793, 1235
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	504, 576, 781
BstMAI	GTCTC	3 cut(s)	807, 895, 1475
BstMBI	GATC	3 cut(s)	501, 573, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 1013, 1075, 1223, 1440
BstNI	CCWGG	1 cut(s)	959
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	738, 739, 957
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	4 cut(s)	220, 949, 977, 1025
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	778
Bsu15I	ATCGAT	1 cut(s)	897
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	147, 453
BsuTUI	ATCGAT	1 cut(s)	897
BtsCI	GGATG	4 cut(s)	88, 740, 793, 1235
BtsIMutI	CAGTG	2 cut(s)	1195, 1206
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	146
Cfr9I	CCCGGG	1 cut(s)	739
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	1251
Csp6I	GTAC	6 cut(s)	50, 257, 343, 547, 841, 974
CviAII	CATG	5 cut(s)	292, 349, 375, 624, 874
CviQI	GTAC	6 cut(s)	50, 257, 343, 547, 841, 974
DdeI	CTNAG	3 cut(s)	766, 1207, 1258
DpnI	GATC	3 cut(s)	503, 575, 780
DpnII	GATC	3 cut(s)	501, 573, 778
Eam1104I	CTCTTC	4 cut(s)	38, 468, 991, 1122
EarI	CTCTTC	4 cut(s)	38, 468, 991, 1122
Eco130I	CCWWGG	1 cut(s)	949
Eco24I	GRGCYC	1 cut(s)	1478
Eco32I	GATATC	2 cut(s)	945, 1047
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	2 cut(s)	739, 1478
EcoRII	CCWGG	1 cut(s)	957
EcoRV	GATATC	2 cut(s)	945, 1047
EcoT14I	CCWWGG	1 cut(s)	949
EcoT38I	GRGCYC	1 cut(s)	1478
ErhI	CCWWGG	1 cut(s)	949
FaeI	CATG	5 cut(s)	295, 352, 378, 627, 877
FatI	CATG	5 cut(s)	291, 348, 374, 623, 873
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	674
Fnu4HI	GCNGC	4 cut(s)	234, 963, 966, 1014
FokI	GGATG	4 cut(s)	95, 747, 800, 1242
FriOI	GRGCYC	1 cut(s)	1478
Fsp4HI	GCNGC	4 cut(s)	234, 963, 966, 1014
FspBI	CTAG	3 cut(s)	230, 297, 305
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	234, 963, 966, 1014
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	147, 453
HapII	CCGG	3 cut(s)	660, 740, 867
HgaI	GACGC	1 cut(s)	1251
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	295, 352, 378, 627, 877
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	3 cut(s)	25, 1282, 1469
HpaII	CCGG	3 cut(s)	660, 740, 867
HphI	GGTGA	5 cut(s)	151, 244, 511, 1108, 1149
Hpy166II	GTNNAC	5 cut(s)	50, 675, 750, 974, 1255
Hpy188I	TCNGA	2 cut(s)	472, 1223
Hpy188III	TCNNGA	4 cut(s)	830, 1090, 1183, 1209
Hpy8I	GTNNAC	5 cut(s)	50, 675, 750, 974, 1255
HpyAV	CCTTC	2 cut(s)	211, 1322
HpyCH4III	ACNGT	6 cut(s)	256, 332, 342, 637, 1190, 1372
HpyCH4IV	ACGT	2 cut(s)	746, 1099
HpyCH4V	TGCA	6 cut(s)	236, 335, 420, 605, 965, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 1013, 1075, 1223, 1440
HpyF3I	CTNAG	3 cut(s)	766, 1207, 1258
HpySE526I	ACGT	2 cut(s)	746, 1099
Hsp92II	CATG	5 cut(s)	295, 352, 378, 627, 877
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	501, 573, 778
LmnI	GCTCC	2 cut(s)	408, 1223
Lsp1109I	GCAGC	4 cut(s)	220, 949, 977, 1025
LweI	GCATC	4 cut(s)	288, 429, 725, 889
MaeI	CTAG	3 cut(s)	230, 297, 305
MaeII	ACGT	2 cut(s)	746, 1099
MaeIII	GTNAC	3 cut(s)	209, 1155, 1417
MalI	GATC	3 cut(s)	503, 575, 780
MboI	GATC	3 cut(s)	501, 573, 778
MboII	GAAGA	8 cut(s)	17, 20, 55, 148, 356, 485, 1008, 1139
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	2 cut(s)	1206, 1478
MluCI	AATT	4 cut(s)	88, 594, 600, 641
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	1173
MseI	TTAA	4 cut(s)	18, 645, 863, 1029
MspA1I	CMGCKG	2 cut(s)	370, 712
MspI	CCGG	3 cut(s)	660, 740, 867
MspR9I	CCNGG	3 cut(s)	740, 741, 959
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	1169
MvaI	CCWGG	1 cut(s)	959
MwoI	GCNNNNNNNGC	5 cut(s)	149, 1013, 1075, 1223, 1440
NciI	CCSGG	2 cut(s)	740, 741
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	3 cut(s)	501, 573, 778
NlaIII	CATG	5 cut(s)	295, 352, 378, 627, 877
NmuCI	GTSAC	2 cut(s)	209, 1155
NspI	RCATGY	1 cut(s)	352
PctI	GAATGC	1 cut(s)	1169
PfeI	GAWTC	2 cut(s)	1282, 1469
PkrI	GCNGC	4 cut(s)	235, 964, 967, 1015
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	957
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	957
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	6 cut(s)	51, 258, 344, 548, 842, 975
RsaNI	GTAC	6 cut(s)	50, 257, 343, 547, 841, 974
SalI	GTCGAC	1 cut(s)	673
SaqAI	TTAA	4 cut(s)	18, 645, 863, 1029
SatI	GCNGC	4 cut(s)	234, 963, 966, 1014
Sau3AI	GATC	3 cut(s)	501, 573, 778
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	740, 741, 959
SduI	GDGCHC	2 cut(s)	1206, 1478
SfaNI	GCATC	4 cut(s)	288, 429, 725, 889
SfcI	CTRYAG	1 cut(s)	963
SmaI	CCCGGG	1 cut(s)	741
SmlI	CTYRAG	3 cut(s)	794, 830, 1090
SmoI	CTYRAG	3 cut(s)	794, 830, 1090
Sse9I	AATT	4 cut(s)	88, 594, 600, 641
SsiI	CCGC	1 cut(s)	370
SspI	AATATT	2 cut(s)	16, 466
SspMI	CTAG	3 cut(s)	230, 297, 305
StyD4I	CCNGG	3 cut(s)	738, 739, 957
StyI	CCWWGG	1 cut(s)	949
TaaI	ACNGT	6 cut(s)	256, 332, 342, 637, 1190, 1372
TaiI	ACGT	2 cut(s)	749, 1102
TaqI	TCGA	6 cut(s)	674, 897, 983, 1043, 1326, 1472
TasI	AATT	4 cut(s)	88, 594, 600, 641
TatI	WGTACW	2 cut(s)	49, 546
TfiI	GAWTC	2 cut(s)	1282, 1469
Tru1I	TTAA	4 cut(s)	18, 645, 863, 1029
Tru9I	TTAA	4 cut(s)	18, 645, 863, 1029
TscAI	CASTG	2 cut(s)	1195, 1206
TseFI	GTSAC	2 cut(s)	209, 1155
TseI	GCWGC	4 cut(s)	233, 962, 965, 1013
Tsp45I	GTSAC	2 cut(s)	209, 1155
TspDTI	ATGAA	4 cut(s)	193, 612, 890, 1140
TspMI	CCCGGG	1 cut(s)	739
TspRI	CASTG	2 cut(s)	1195, 1206
XapI	RAATTY	2 cut(s)	88, 641
XceI	RCATGY	1 cut(s)	352
XmaI	CCCGGG	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	674
XspI	CTAG	3 cut(s)	230, 297, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.