AT1G33110

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
12004854 .. 12008852
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33110.2

Sequence Viewer

Length: 1485 bp
ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGGCGGAGAACGGCGGAGAAGAGAAGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAAGAAGCTATGGATTGTGGCGGCGCCAGCGATCTTCACGAGATTCTCAACGTTCGGAGTTTCAATAATAAGTCAATCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCTGCTTACTCTATCACCTTCACCGTTCTCCTCCGGTTTAGTAATGGTATCTTGTTAGGTATGGCCAGTGCATTGGAAACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCTACCTCCAAAGGTCATGGATCGTCCTTACAGGTTGTACCATTTGCCTCACGCCCGTCTATATCTTCTCTGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTCGGATCATAGCCCTATGGGTCATAGGCATCAACTTCTCTTTTGTGCCTTCCTTCACTTGCCAAATGTTCCTCCAAGCTCAGAGCAAGAACAAGATCATTGCCTACGTGGCTGCTGTCTCCTTAGGGGTCCATGTCTTCTTGTCGTGGCTACTTATGGTTCATTTCAATTTTGGGATCACTGGTGCTATGACCTCTACGCTAGTTGCGTTCTGGTTGCCTAATATTGCCCAACTCTTGTTCGTCACGTGCGGTGGGTGTAAGGACACATGGAGAGGATTCTCTATGATGGCCTTCAAAGATTTATGGCCCGTCTTCAAACTTTCTATGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGGTACAACTCAATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGATGCACTAGCAATCTGCCTCAACATAAATGGACTGGAGATGATGATAGCACTTGGGTTTTTGGCAGCTGCAAGCGTAAGAGTGTCCAACGAGCTCGGTAGTGGAAACCCCAAAGGAGCCAAGTTTGCAACACTAACCGCGGTTTTCACATCACTCTCTTTAGGAATAGTTCTATTCTTCGTCTTCTTGTTTCTGAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGCCGAAGTTGCCGATCTTTCTCCGCTTTTAGCCTTTTCCATCCTCATGAATAGTGTTCAACCCGTTCTCTCTGGAGTTGCCGTCGGAGCTGGATGGCAAGGATATGTTACTTACGTTAACCTTGCTTGCTATTACCTTGTCGGAATTCCTATTGGTATTATCCTTGGTTATGTCGTTGGTTTGCAAGTGAAAGGCGTATGGATCGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTACCGTCATGACTCTGAGAACAGATTGGGATCAACAGGTGTCAACGTCGTTGAGACGTTTAAATCGGTGGGTTGTACCAGAATCTAGAGACGTAAACCAAGTATCATCAGAGGAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

53.7

Weight (kDa)

8.61

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 46 - 206 2.9e-31 MatE
MatE PF01554 270 - 402 3.7e-22 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccII CGCG 1 cut(s) 1025
AciI CCGC 8 cut(s) 29, 50, 60, 131, 717, 1023, 1025, 1148
AclI AACGTT 1 cut(s) 161
AclWI GGATC 6 cut(s) 353, 374, 479, 650, 1334, 1404
AcoI YGGCCR 3 cut(s) 3, 196, 282
AcsI RAATTY 2 cut(s) 859, 1269
AcvI CACGTG 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 4 cut(s) 385, 830, 846, 1443
AgsI TTSAA 9 cut(s) 40, 88, 107, 174, 634, 763, 784, 865, 1184
AloI GAACNNNNNNTCC 4 cut(s) 441, 473, 1335, 1367
AluBI AGCT 8 cut(s) 22, 118, 323, 545, 953, 979, 1118, 1214
AluI AGCT 8 cut(s) 22, 118, 323, 545, 953, 979, 1118, 1214
Alw21I GWGCWC 2 cut(s) 24, 981
Alw26I GTCTC 3 cut(s) 589, 1414, 1449
AlwI GGATC 6 cut(s) 353, 374, 479, 650, 1334, 1404
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 6 cut(s) 3, 196, 282, 418, 756, 773
ApeKI GCWGC 5 cut(s) 221, 578, 950, 953, 1124
ApoI RAATTY 2 cut(s) 859, 1269
Asp700I GAANNNNTTC 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 4 cut(s) 206, 419, 595, 774
AsuHPI GGTGA 2 cut(s) 226, 232
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 206, 595
AxyI CCTNAGG 2 cut(s) 436, 589
BalI TGGCCA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 24, 981
BauI CACGAG 1 cut(s) 148
BbrPI CACGTG 1 cut(s) 714
BbsI GAAGAC 4 cut(s) 595, 772, 789, 1060
Bbv12I GWGCWC 2 cut(s) 24, 981
BbvI GCAGC 5 cut(s) 208, 565, 940, 962, 1136
BccI CCATC 4 cut(s) 207, 748, 1172, 1212
BceAI ACGGC 4 cut(s) 42, 63, 73, 1190
BcoDI GTCTC 3 cut(s) 589, 1414, 1449
BfaI CTAG 3 cut(s) 668, 893, 1452
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 575
BisI GCNGC 7 cut(s) 30, 132, 222, 579, 951, 954, 1125
BlsI GCNGC 7 cut(s) 31, 133, 223, 580, 952, 955, 1126
Bme18I GGWCC 2 cut(s) 206, 595
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 4 cut(s) 206, 419, 595, 774
BmiI GGNNCC 3 cut(s) 135, 596, 1003
BmsI GCATC 2 cut(s) 504, 877
BpiI GAAGAC 4 cut(s) 595, 772, 789, 1060
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 941, 1218
BsaAI YACGTR 2 cut(s) 574, 714
BsaBI GATNNNNATC 1 cut(s) 1395
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 1023, 1288
BsaWI WCCGGW 2 cut(s) 252, 800
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bse1I ACTGG 4 cut(s) 285, 652, 859, 924
Bse21I CCTNAGG 2 cut(s) 436, 589
Bse3DI GCAATG 1 cut(s) 564
Bse8I GATNNNNATC 1 cut(s) 1395
BseDI CCNNGG 2 cut(s) 1023, 1288
BseGI GGATG 3 cut(s) 79, 1164, 1223
BseJI GATNNNNATC 1 cut(s) 1395
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 560, 1070, 1373
BseNI ACTGG 4 cut(s) 285, 652, 859, 924
BseRI GAGGAG 4 cut(s) 24, 27, 30, 239
BseXI GCAGC 5 cut(s) 208, 565, 940, 962, 1136
Bsh1236I CGCG 1 cut(s) 1025
BshFI GGCC 6 cut(s) 5, 198, 284, 420, 758, 775
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 24, 981
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 6, 253, 801
BsmAI GTCTC 3 cut(s) 589, 1414, 1449
BsmBI CGTCTC 2 cut(s) 1414, 1449
BsmI GAATGC 2 cut(s) 813, 1338
BsnI GGCC 6 cut(s) 5, 198, 284, 420, 758, 775
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 24, 981
Bsp143I GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
BspACI CCGC 8 cut(s) 29, 50, 60, 131, 717, 1023, 1025, 1148
BspANI GGCC 6 cut(s) 5, 198, 284, 420, 758, 775
BspCNI CTCAG 3 cut(s) 559, 1071, 1374
BspFNI CGCG 1 cut(s) 1025
BspHI TCATGA 2 cut(s) 1170, 1374
BspLI GGNNCC 3 cut(s) 135, 596, 1003
BspPI GGATC 6 cut(s) 353, 374, 479, 650, 1334, 1404
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 4 cut(s) 285, 652, 859, 924
BssECI CCNNGG 2 cut(s) 1023, 1288
BssMI GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
BssNI GRCGYC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 1288
Bst2BI CACGAG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 244, 1372
Bst6I CTCTTC 2 cut(s) 60, 1081
BstACI GRCGYC 1 cut(s) 134
BstBAI YACGTR 2 cut(s) 574, 714
BstC8I GCNNGC 3 cut(s) 138, 958, 1252
BstDEI CTNAG 6 cut(s) 430, 436, 546, 589, 1079, 1382
BstDSI CCRYGG 1 cut(s) 1023
BstF5I GGATG 3 cut(s) 79, 1164, 1223
BstFNI CGCG 1 cut(s) 1025
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 9 cut(s) 144, 348, 369, 474, 564, 645, 1141, 1329, 1399
BstMAI GTCTC 3 cut(s) 589, 1414, 1449
BstMBI GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
BstMWI GCNNNNNNNGC 9 cut(s) 137, 320, 575, 878, 887, 1010, 1124, 1133, 1211
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 5 cut(s) 208, 565, 940, 962, 1136
BstV2I GAAGAC 4 cut(s) 595, 772, 789, 1060
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 345
Bsu36I CCTNAGG 2 cut(s) 436, 589
BsuRI GGCC 6 cut(s) 5, 198, 284, 420, 758, 775
BtgI CCRYGG 1 cut(s) 1023
BtsCI GGATG 3 cut(s) 79, 1164, 1223
BtsIMutI CAGTG 3 cut(s) 292, 645, 852
Cac8I GCNNGC 3 cut(s) 138, 958, 1252
CciI TCATGA 2 cut(s) 1170, 1374
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 4 cut(s) 206, 419, 595, 774
Cfr42I CCGCGG 1 cut(s) 1026
Csp6I GTAC 4 cut(s) 384, 829, 845, 1442
CviAII CATG 5 cut(s) 363, 599, 735, 1171, 1375
CviQI GTAC 4 cut(s) 384, 829, 845, 1442
DdeI CTNAG 6 cut(s) 430, 436, 546, 589, 1079, 1382
DinI GGCGCC 1 cut(s) 135
DpnI GATC 9 cut(s) 143, 347, 368, 473, 563, 644, 1140, 1328, 1398
DpnII GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
DraI TTTAAA 1 cut(s) 1428
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 3 cut(s) 3, 196, 282
Eam1104I CTCTTC 2 cut(s) 60, 1081
EarI CTCTTC 2 cut(s) 60, 1081
EciI GGCGGA 2 cut(s) 65, 75
Ecl136II GAGCTC 2 cut(s) 22, 979
Eco130I CCWWGG 1 cut(s) 1288
Eco24I GRGCYC 2 cut(s) 24, 981
Eco47I GGWCC 2 cut(s) 206, 595
Eco53kI GAGCTC 2 cut(s) 22, 979
Eco72I CACGTG 1 cut(s) 714
Eco81I CCTNAGG 2 cut(s) 436, 589
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 2 cut(s) 22, 979
EcoRI GAATTC 1 cut(s) 1269
EcoT14I CCWWGG 1 cut(s) 1288
EcoT38I GRGCYC 2 cut(s) 24, 981
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 1288
Esp3I CGTCTC 2 cut(s) 1414, 1449
FaeI CATG 5 cut(s) 366, 602, 738, 1174, 1378
FalI AAGNNNNNCTT 4 cut(s) 172, 204, 867, 899
FatI CATG 5 cut(s) 362, 598, 734, 1170, 1374
FauNDI CATATG 1 cut(s) 336
Fnu4HI GCNGC 7 cut(s) 30, 132, 222, 579, 951, 954, 1125
FokI GGATG 3 cut(s) 86, 1151, 1230
FriOI GRGCYC 2 cut(s) 24, 981
Fsp4HI GCNGC 7 cut(s) 30, 132, 222, 579, 951, 954, 1125
FspBI CTAG 3 cut(s) 668, 893, 1452
GlaI GCGC 1 cut(s) 135
GluI GCNGC 7 cut(s) 30, 132, 222, 579, 951, 954, 1125
GsuI CTGGAG 2 cut(s) 941, 1218
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 6 cut(s) 5, 198, 284, 420, 758, 775
HapII CCGG 3 cut(s) 6, 253, 801
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 5 cut(s) 366, 602, 738, 1174, 1378
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 2 cut(s) 1243, 1410
HindII GTYRAC 2 cut(s) 1243, 1410
HinfI GANTC 5 cut(s) 107, 153, 744, 1378, 1448
HpaI GTTAAC 1 cut(s) 1243
HpaII CCGG 3 cut(s) 6, 253, 801
HphI GGTGA 2 cut(s) 226, 232
Hpy166II GTNNAC 3 cut(s) 1243, 1410, 1462
Hpy188III TCNNGA 8 cut(s) 148, 343, 443, 884, 1171, 1197, 1375, 1452
Hpy8I GTNNAC 3 cut(s) 1243, 1410, 1462
Hpy99I CGWCG 2 cut(s) 1211, 1417
HpyAV CCTTC 5 cut(s) 64, 247, 525, 529, 769
HpyCH4III ACNGT 2 cut(s) 244, 1372
HpyCH4IV ACGT 7 cut(s) 161, 573, 713, 1239, 1412, 1423, 1458
HpyCH4V TGCA 5 cut(s) 290, 890, 956, 1013, 1309
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 320, 575, 878, 887, 1010, 1124, 1133, 1211
HpyF3I CTNAG 6 cut(s) 430, 436, 546, 589, 1079, 1382
HpySE526I ACGT 7 cut(s) 161, 573, 713, 1239, 1412, 1423, 1458
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 5 cut(s) 366, 602, 738, 1174, 1378
HspAI GCGC 1 cut(s) 134
KasI GGCGCC 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 1243
KspI CCGCGG 1 cut(s) 1026
Kzo9I GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
LmnI GCTCC 3 cut(s) 320, 1001, 1211
Lsp1109I GCAGC 5 cut(s) 208, 565, 940, 962, 1136
LweI GCATC 2 cut(s) 504, 877
MaeI CTAG 3 cut(s) 668, 893, 1452
MaeII ACGT 7 cut(s) 161, 573, 713, 1239, 1412, 1423, 1458
MaeIII GTNAC 2 cut(s) 709, 1231
MalI GATC 9 cut(s) 143, 347, 368, 473, 563, 644, 1140, 1328, 1398
MboI GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
MboII GAAGA 9 cut(s) 77, 136, 403, 595, 772, 789, 1054, 1060, 1098
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 24, 981
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 3 cut(s) 634, 859, 1269
MluNI TGGCCA 1 cut(s) 284
Mly113I GGCGCC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 1372
MmeI TCCRAC 3 cut(s) 996, 1189, 1246
Mox20I TGGCCA 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 1090
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 1242, 1427
MslI CAYNNNNRTG 1 cut(s) 1169
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 953, 1025
MspI CCGG 3 cut(s) 6, 253, 801
Mva1269I GAATGC 2 cut(s) 813, 1338
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 9 cut(s) 137, 320, 575, 878, 887, 1010, 1124, 1133, 1211
NarI GGCGCC 1 cut(s) 134
NdeI CATATG 1 cut(s) 336
NdeII GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
NlaIII CATG 5 cut(s) 366, 602, 738, 1174, 1378
NlaIV GGNNCC 3 cut(s) 135, 596, 1003
NmuCI GTSAC 1 cut(s) 709
PagI TCATGA 2 cut(s) 1170, 1374
PcsI WCGNNNNNNNCGW 2 cut(s) 457, 671
PctI GAATGC 2 cut(s) 813, 1338
PdmI GAANNNNTTC 1 cut(s) 1090
PfeI GAWTC 4 cut(s) 107, 153, 744, 1448
PkrI GCNGC 7 cut(s) 31, 133, 223, 580, 952, 955, 1126
PleI GAGTC 1 cut(s) 1372
PluTI GGCGCC 1 cut(s) 137
PmaCI CACGTG 1 cut(s) 714
PmlI CACGTG 1 cut(s) 714
PpsI GAGTC 1 cut(s) 1372
Ppu21I YACGTR 2 cut(s) 574, 714
Psp124BI GAGCTC 2 cut(s) 24, 981
Psp1406I AACGTT 1 cut(s) 161
PspCI CACGTG 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 135, 596, 1003
PspPI GGNCC 4 cut(s) 206, 419, 595, 774
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 4 cut(s) 385, 830, 846, 1443
RsaNI GTAC 4 cut(s) 384, 829, 845, 1442
RseI CAYNNNNRTG 1 cut(s) 1169
SacI GAGCTC 2 cut(s) 24, 981
SacII CCGCGG 1 cut(s) 1026
SaqAI TTAA 2 cut(s) 1242, 1427
SatI GCNGC 7 cut(s) 30, 132, 222, 579, 951, 954, 1125
Sau3AI GATC 9 cut(s) 141, 345, 366, 471, 561, 642, 1138, 1326, 1396
Sau96I GGNCC 4 cut(s) 206, 419, 595, 774
SchI GAGTC 1 cut(s) 1372
SduI GDGCHC 2 cut(s) 24, 981
SfaNI GCATC 2 cut(s) 504, 877
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 135
Sfr303I CCGCGG 1 cut(s) 1026
SgrBI CCGCGG 1 cut(s) 1026
SinI GGWCC 2 cut(s) 206, 595
SmiMI CAYNNNNRTG 1 cut(s) 1169
Sse9I AATT 3 cut(s) 634, 859, 1269
SsiI CCGC 8 cut(s) 29, 50, 60, 131, 717, 1023, 1025, 1148
SspDI GGCGCC 1 cut(s) 133
SspI AATATT 2 cut(s) 691, 1347
SspMI CTAG 3 cut(s) 668, 893, 1452
SstI GAGCTC 2 cut(s) 24, 981
StyI CCWWGG 1 cut(s) 1288
TaaI ACNGT 2 cut(s) 244, 1372
TaiI ACGT 7 cut(s) 164, 576, 716, 1242, 1415, 1426, 1461
TasI AATT 3 cut(s) 634, 859, 1269
TauI GCSGC 2 cut(s) 32, 134
TfiI GAWTC 4 cut(s) 107, 153, 744, 1448
Tru1I TTAA 2 cut(s) 1242, 1427
Tru9I TTAA 2 cut(s) 1242, 1427
TscAI CASTG 3 cut(s) 292, 652, 859
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 5 cut(s) 221, 578, 950, 953, 1124
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 3 cut(s) 181, 617, 1187
TspGWI ACGGA 2 cut(s) 333, 449
TspRI CASTG 3 cut(s) 292, 652, 859
VpaK11BI GGWCC 2 cut(s) 206, 595
XapI RAATTY 2 cut(s) 859, 1269
XbaI TCTAGA 1 cut(s) 1451
XmnI GAANNNNTTC 1 cut(s) 1090
XspI CTAG 3 cut(s) 668, 893, 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.