Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Reverse (-)

45056027 .. 45063767

Gene Structure 7741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAATCATATGGTGCAAAACAATATGACATGCTTGGGGTACATCTTCAGAGATCATGGGTAGTGTTGTTTGTCAGCGCATTCTTCCTTGTTCCTATTTGCATCTTTACAACTCCAATCTTAGAGGCCTTAGGACAGGAACAGAATATTGCACAAGTGGCGGGCTATATTTCTCTCTGGGTAATCCCGGTGATTTTCGCCTTTGTTTTATCCTTTACCTGCCAAATGTACTTGCAAGCACAGAGCAAAAATTTGATCATAGCTTACTTGTCAGCAATTTCAATTGCAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATATCAGCTTGGGATTCCTGGCGCAATGGTGTCCACAATTTTTGCATTTTGGATTCCCAACATTGGTCAACTTTTATTTGTTATATGTGGAGGATGCCCACAGACATGGAAAGGCTTCTCGATGTTAGCTTTTAAAGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCTTCTGGTGTTATGCTTTGTCTGGAGCTTTGGTACAATACGGTCTTGGTTCTTTTAACTGGAAGTATGGAAAATGCTGAGGTTTCTATCGATGCTCTTTCTATCTGTCTCAACATCAATGGGTGGGAAATGATGATATCCCTTGGCTTCTTGGCTGCAGCAAGTGTACGAGTGTCAAATGAGCTTGGACGAGGTAGCTCAAAAGGGGCGAAGTTCTCAATTGTGGTTATAGTGTTCACATCATTTGCCATCGGTGTTGTGTTGTTCTTCATTTTCCTATTCTTGAGGGAACGTCTATCCTACATCTTTACCAACGACGAAGAGGTAGCCAAAGCAGTTGCTGACTTGTCACCATTATTGGCCTTCTCCATATTGTTGAACAGTGTTCAGCCTGTGCTCTCCGGAGTTGCTCTGGGAGCTGGATGGCAGAGTACTGTAGCATATGTGAACATAGCATGTTATTACCTTATAGGCATTCCCGTTGGAGTTGTGCTTGGTTATGTTGTCAACCTACAAGTCAAAGGTGTTTGGATTGGAATGTTGTTCGGAACATTTGTGCAAACGATTGTACTACTAATACTCACCTACAGAACTGATTGGGATAATCAGGTAACAATAGCTCGTAATCGTGTTAACAAGTGGGCCGTTAAAGATAGTGGAGACCCAAGCTCCGACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

398

Amino Acids

43.67

Weight (kDa)

5.73

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 113	1.1e-19	MatE
MatE	PF01554	175 - 335	1.4e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	917
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	6 cut(s)	69, 257, 551, 684, 949, 1086
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	309, 895
AjnI	CCWGG	1 cut(s)	367
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	2 cut(s)	629, 1170
AlwNI	CAGNNNCTG	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	917
AoxI	GGCC	3 cut(s)	153, 876, 1158
ApeKI	GCWGC	2 cut(s)	671, 674
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	3 cut(s)	13, 107, 374
AspS9I	GGNCC	1 cut(s)	1158
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	229, 858, 1090
AxyI	CCTNAGG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	658, 686
BccI	CCATC	2 cut(s)	773, 933
BceAI	ACGGC	1 cut(s)	1145
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	629, 1170
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	3 cut(s)	672, 951, 1102
BfuAI	ACCTGC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	2 cut(s)	672, 675
BlsI	GCNGC	2 cut(s)	673, 676
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	2 cut(s)	215, 369
BmgT120I	GGNCC	1 cut(s)	1158
BmrFI	CCNGG	2 cut(s)	215, 369
BmsI	GCATC	3 cut(s)	138, 434, 598
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	1170
BsaJI	CCNNGG	1 cut(s)	658
BsaWI	WCCGGW	1 cut(s)	917
BsaXI	ACNNNNNCTCC	3 cut(s)	533, 563, 1169
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	580
Bse21I	CCTNAGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	4 cut(s)	321, 449, 502, 944
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	658, 686
BshFI	GGCC	3 cut(s)	155, 878, 1160
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	215, 918
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	629, 1170
BsmI	GAATGC	2 cut(s)	107, 990
BsnI	GGCC	3 cut(s)	155, 878, 1160
Bso31I	GGTCTC	1 cut(s)	1170
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp13I	TCCGGA	1 cut(s)	917
Bsp143I	GATC	3 cut(s)	80, 282, 487
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	3 cut(s)	155, 878, 1160
BspCNI	CTCAG	1 cut(s)	586
BspDI	ATCGAT	1 cut(s)	606
BspEI	TCCGGA	1 cut(s)	917
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	1170
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	3 cut(s)	80, 282, 487
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	4 cut(s)	346, 559, 899, 952
Bst6I	CTCTTC	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	190, 264
BstDEI	CTNAG	3 cut(s)	148, 157, 594
BstF5I	GGATG	4 cut(s)	321, 449, 502, 944
BstHHI	GCGC	3 cut(s)	13, 107, 374
BstKTI	GATC	3 cut(s)	83, 285, 490
BstMAI	GTCTC	2 cut(s)	629, 1170
BstMBI	GATC	3 cut(s)	80, 282, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 932
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	2 cut(s)	61, 975
BstSCI	CCNGG	2 cut(s)	213, 367
BstSFI	CTRYAG	3 cut(s)	672, 951, 1102
BstV1I	GCAGC	2 cut(s)	658, 686
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	606
Bsu36I	CCTNAGG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	155, 878, 1160
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	4 cut(s)	321, 449, 502, 944
BtsIMutI	CAGTG	1 cut(s)	904
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	190, 264
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	3 cut(s)	13, 107, 374
Cfr13I	GGNCC	1 cut(s)	1158
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	6 cut(s)	68, 256, 550, 683, 948, 1085
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	5 cut(s)	58, 84, 333, 456, 972
CviQI	GTAC	6 cut(s)	68, 256, 550, 683, 948, 1085
DdeI	CTNAG	3 cut(s)	148, 157, 594
DpnI	GATC	3 cut(s)	82, 284, 489
DpnII	GATC	3 cut(s)	80, 282, 487
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	831
EarI	CTCTTC	1 cut(s)	831
Eco130I	CCWWGG	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	1170
Eco32I	GATATC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	5 cut(s)	61, 87, 336, 459, 975
FatI	CATG	5 cut(s)	57, 83, 332, 455, 971
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	2 cut(s)	37, 958
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	672, 675
FokI	GGATG	4 cut(s)	308, 456, 509, 951
Fsp4HI	GCNGC	2 cut(s)	672, 675
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	12, 106, 373
GluI	GCNGC	2 cut(s)	672, 675
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	155, 878, 1160
HapII	CCGG	2 cut(s)	215, 918
HhaI	GCGC	3 cut(s)	13, 107, 374
Hin1II	CATG	5 cut(s)	61, 87, 336, 459, 975
Hin6I	GCGC	3 cut(s)	11, 105, 372
HinP1I	GCGC	3 cut(s)	11, 105, 372
HincII	GTYRAC	3 cut(s)	419, 1024, 1150
HindII	GTYRAC	3 cut(s)	419, 1024, 1150
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	364, 403, 1190
HpaI	GTTAAC	1 cut(s)	1150
HpaII	CCGG	2 cut(s)	215, 918
HphI	GGTGA	3 cut(s)	229, 858, 1090
Hpy166II	GTNNAC	7 cut(s)	384, 419, 683, 753, 964, 1024, 1150
Hpy188I	TCNGA	3 cut(s)	78, 1064, 1189
Hpy188III	TCNNGA	4 cut(s)	469, 539, 799, 918
Hpy8I	GTNNAC	7 cut(s)	384, 419, 683, 753, 964, 1024, 1150
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	1 cut(s)	889
HpyCH4III	ACNGT	4 cut(s)	346, 559, 899, 952
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	8 cut(s)	44, 129, 179, 262, 314, 395, 674, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 932
HpyF3I	CTNAG	3 cut(s)	148, 157, 594
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	5 cut(s)	61, 87, 336, 459, 975
HspAI	GCGC	3 cut(s)	11, 105, 372
Kpn2I	TCCGGA	1 cut(s)	917
Ksp22I	TGATCA	1 cut(s)	282
KspAI	GTTAAC	1 cut(s)	1150
Kzo9I	GATC	3 cut(s)	80, 282, 487
LmnI	GCTCC	3 cut(s)	541, 932, 1190
Lsp1109I	GCAGC	2 cut(s)	658, 686
LweI	GCATC	3 cut(s)	138, 434, 598
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	864, 1126
MalI	GATC	3 cut(s)	82, 284, 489
MboI	GATC	3 cut(s)	80, 282, 487
MboII	GAAGA	5 cut(s)	65, 103, 510, 775, 848
MfeI	CAATTG	2 cut(s)	309, 735
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	915
MluCI	AATT	5 cut(s)	277, 303, 309, 387, 735
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	1 cut(s)	979
MnlI	CCTC	7 cut(s)	145, 335, 434, 589, 701, 795, 832
MroI	TCCGGA	1 cut(s)	917
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	4 cut(s)	483, 572, 1149, 1164
MslI	CAYNNNNRTG	1 cut(s)	454
MspI	CCGG	2 cut(s)	215, 918
MspR9I	CCNGG	2 cut(s)	215, 369
MunI	CAATTG	2 cut(s)	309, 735
Mva1269I	GAATGC	2 cut(s)	107, 990
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	185, 932
NciI	CCSGG	1 cut(s)	215
NdeI	CATATG	2 cut(s)	37, 958
NdeII	GATC	3 cut(s)	80, 282, 487
NlaIII	CATG	5 cut(s)	61, 87, 336, 459, 975
NmuCI	GTSAC	1 cut(s)	864
NspI	RCATGY	2 cut(s)	61, 975
PceI	AGGCCT	1 cut(s)	155
PctI	GAATGC	2 cut(s)	107, 990
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	364, 403
PkrI	GCNGC	2 cut(s)	673, 676
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	1158
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	6 cut(s)	69, 257, 551, 684, 949, 1086
RsaNI	GTAC	6 cut(s)	68, 256, 550, 683, 948, 1085
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	4 cut(s)	483, 572, 1149, 1164
SatI	GCNGC	2 cut(s)	672, 675
Sau3AI	GATC	3 cut(s)	80, 282, 487
Sau96I	GGNCC	1 cut(s)	1158
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	1 cut(s)	1184
ScrFI	CCNGG	2 cut(s)	215, 369
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	3 cut(s)	138, 434, 598
SfcI	CTRYAG	3 cut(s)	672, 951, 1102
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
Sse9I	AATT	5 cut(s)	277, 303, 309, 387, 735
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	213, 367
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	4 cut(s)	346, 559, 899, 952
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	2 cut(s)	470, 606
TasI	AATT	5 cut(s)	277, 303, 309, 387, 735
TatI	WGTACW	3 cut(s)	255, 947, 1084
TfiI	GAWTC	2 cut(s)	364, 403
Tru1I	TTAA	4 cut(s)	483, 572, 1149, 1164
Tru9I	TTAA	4 cut(s)	483, 572, 1149, 1164
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	1 cut(s)	864
TseI	GCWGC	2 cut(s)	671, 674
Tsp45I	GTSAC	1 cut(s)	864
TspDTI	ATGAA	2 cut(s)	321, 775
TspRI	CASTG	1 cut(s)	904
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	2 cut(s)	61, 975
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.