Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Forward (+)

4850068 .. 4855613

Gene Structure 5546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGGGGAGGAAGACATAAAGAGGAAACTGCTGATAAAGGCAGAAGACGAACGTGAACACGATTTGGGTTTGCAATACAGAGTGTGGAATGAAAGCAAGAAGATTTGGGTGATAGCTGGACCTGCTATATTCACCAGATTCTCTACTTTTGGAACAAATGTGGTCAGTCAAGCCTTCATTGGTCACATTGGCTCTACTGAGTTAGCTGCATATTCACTCGTCTTTACTGTACTGGTCAGGTTCGCAAATGGCATCCTGCTGGGAATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAGTCATATGGTGCAAAACAATATGACATGCTTGGGGTACATCTTCAGAGATCATGGATAGTGTTGTTTGTCAGCGCATTCTTCCTTGTTCCTATTTGCATCTTTACAACTCCAATCTTAGAGGCCTTAGGACAGGAACAGAATATTGCACAAGCGGCGGGCTATATTTCTCTCTGGGTAATCCCGGTGATTTTCGCCTTTGTTTTATCCTTTACCTGCCAAATGTACTTGCAAGCACAGAGCAAAAATATGATCATAGCTTACTTGTCAGCAATTTCAATTGCAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATATCAGCTTGGGATTCCTGGTGCAATGGTGTCCACAATTTTAGCATTTTGGATACCCAACATTGGTCAACTTTTATTTGTTATATGTGGAGGATGCCCACAGACATGGAAAGGCTTCTCGATGTTAGCTTTTAAAGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCTTCTGGTGTTATGCTTTGTCTGGAGCTTTGGTACAATACGGTCTTGGTTCTTTTAACTGGAAGTATGGAAAATGCTGAGGTTTCTATCGATGCTCTAGCTATTTGTCTCAACATCAATGGGTGGGAAATGATGATATCCCTTGGCTTCTTGGCTGCAGCAAGTGTACGAGTGTCAAATGAGCTTGGACGAGGTAGCTCAAAAGGGGCGAAGTTCTCAATTGTGGTTATAGTGTTCGCATCATTTGCCATCGGTATTGTGTTGTTCTTCATTTTCCTGTTCTTGAGGGAACGTCTATCCTACATCTTTACCAACGACGAAGAGGTAGCCAAAGCAGTTGCCGACTTGTCACCTTTATTGGCCTTCTCCATATTGTTGAACAGTGTTCAGCCTGTGCTCTCTGGAGTTGCTCTGGGTGCTGGATGGCAGAGTACTGTAGCATATGTGAACATAGCATGTTATTACCTTATAGGCATTCCCGTTGGAGTTGTGCTTGGTTATGTTGTTAACCTACAAGTCAAAGGTGTTTGGATTGGAATGTTGTTCGGGAACATTTGTGCAAACGATTGTACTGCTAATACTGACCTACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

458

Amino Acids

50.16

Weight (kDa)

5.65

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	41 - 201	1.1e-28	MatE
MatE	PF01554	263 - 423	3.5e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	130, 518
AciI	CCGC	2 cut(s)	449, 452
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	7 cut(s)	231, 333, 521, 815, 948, 1213, 1351
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	2 cut(s)	573, 1159
AjnI	CCWGG	1 cut(s)	631
Alw21I	GWGCWC	1 cut(s)	1179
Alw26I	GTCTC	1 cut(s)	893
AoxI	GGCC	2 cut(s)	417, 1140
ApeKI	GCWGC	3 cut(s)	206, 935, 938
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	277, 371
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	121, 124, 493, 1122
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	421
BbsI	GAAGAC	3 cut(s)	18, 51, 774
Bbv12I	GWGCWC	1 cut(s)	1179
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	3 cut(s)	193, 922, 950
BccI	CCATC	2 cut(s)	1037, 1197
BcgI	CGANNNNNNTGC	2 cut(s)	1334, 1368
BciT130I	CCWGG	1 cut(s)	633
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	2 cut(s)	270, 878
BfmI	CTRYAG	3 cut(s)	936, 1215, 1367
BfuAI	ACCTGC	2 cut(s)	130, 518
BfuI	GTATCC	1 cut(s)	660
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	4 cut(s)	207, 450, 936, 939
BlsI	GCNGC	4 cut(s)	208, 451, 937, 940
BmcAI	AGTACT	1 cut(s)	1213
Bme1390I	CCNGG	2 cut(s)	479, 633
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	479, 633
BmsI	GCATC	5 cut(s)	261, 402, 698, 862, 1028
BpiI	GAAGAC	3 cut(s)	18, 51, 774
BpmI	CTGGAG	2 cut(s)	824, 1203
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	1084
BpuMI	CCSGG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	237, 844
Bse21I	CCTNAGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	5 cut(s)	252, 585, 713, 766, 1208
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	189, 849
BseNI	ACTGG	2 cut(s)	237, 844
BseXI	GCAGC	3 cut(s)	193, 922, 950
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	419, 1142
BshVI	ATCGAT	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	1179
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	893
BsmI	GAATGC	2 cut(s)	371, 1254
BsnI	GGCC	2 cut(s)	419, 1142
Bsp1286I	GDGCHC	1 cut(s)	1179
Bsp143I	GATC	3 cut(s)	344, 546, 751
BspACI	CCGC	2 cut(s)	449, 452
BspANI	GGCC	2 cut(s)	419, 1142
BspCNI	CTCAG	2 cut(s)	190, 850
BspDI	ATCGAT	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	2 cut(s)	130, 518
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	237, 844
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	3 cut(s)	344, 546, 751
BssT1I	CCWWGG	1 cut(s)	922
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	5 cut(s)	229, 610, 823, 1163, 1216
Bst6I	CTCTTC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstC8I	GCNNGC	2 cut(s)	454, 528
BstDEI	CTNAG	4 cut(s)	198, 412, 421, 858
BstF5I	GGATG	5 cut(s)	252, 585, 713, 766, 1208
BstHHI	GCGC	2 cut(s)	277, 371
BstKTI	GATC	3 cut(s)	347, 549, 754
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	3 cut(s)	344, 546, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 449, 1025, 1196
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	2 cut(s)	325, 1239
BstSCI	CCNGG	2 cut(s)	477, 631
BstSFI	CTRYAG	3 cut(s)	936, 1215, 1367
BstV1I	GCAGC	3 cut(s)	193, 922, 950
BstV2I	GAAGAC	3 cut(s)	18, 51, 774
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	870
Bsu36I	CCTNAGG	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	419, 1142
BsuTUI	ATCGAT	1 cut(s)	870
BtsCI	GGATG	5 cut(s)	252, 585, 713, 766, 1208
BtsIMutI	CAGTG	1 cut(s)	1168
BveI	ACCTGC	2 cut(s)	130, 518
Cac8I	GCNNGC	2 cut(s)	454, 528
CfoI	GCGC	2 cut(s)	277, 371
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	7 cut(s)	230, 332, 520, 814, 947, 1212, 1350
CviAII	CATG	5 cut(s)	322, 348, 597, 720, 1236
CviQI	GTAC	7 cut(s)	230, 332, 520, 814, 947, 1212, 1350
DdeI	CTNAG	4 cut(s)	198, 412, 421, 858
DpnI	GATC	3 cut(s)	346, 548, 753
DpnII	GATC	3 cut(s)	344, 546, 751
DraI	TTTAAA	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
Eco130I	CCWWGG	1 cut(s)	922
Eco147I	AGGCCT	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	5 cut(s)	325, 351, 600, 723, 1239
FatI	CATG	5 cut(s)	321, 347, 596, 719, 1235
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	2 cut(s)	301, 1222
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	207, 450, 936, 939
FokI	GGATG	5 cut(s)	239, 572, 720, 773, 1215
Fsp4HI	GCNGC	4 cut(s)	207, 450, 936, 939
FspBI	CTAG	2 cut(s)	270, 878
GlaI	GCGC	2 cut(s)	276, 370
GluI	GCNGC	4 cut(s)	207, 450, 936, 939
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	2 cut(s)	824, 1203
HaeIII	GGCC	2 cut(s)	419, 1142
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	2 cut(s)	277, 371
Hin1II	CATG	5 cut(s)	325, 351, 600, 723, 1239
Hin6I	GCGC	2 cut(s)	275, 369
HinP1I	GCGC	2 cut(s)	275, 369
HincII	GTYRAC	2 cut(s)	683, 1288
HindII	GTYRAC	2 cut(s)	683, 1288
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	2 cut(s)	138, 628
HpaI	GTTAAC	1 cut(s)	1288
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	4 cut(s)	121, 124, 493, 1122
Hpy166II	GTNNAC	6 cut(s)	56, 648, 683, 947, 1228, 1288
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	5 cut(s)	733, 803, 1063, 1182, 1327
Hpy8I	GTNNAC	6 cut(s)	56, 648, 683, 947, 1228, 1288
Hpy99I	CGWCG	1 cut(s)	1100
HpyAV	CCTTC	2 cut(s)	184, 1153
HpyCH4III	ACNGT	5 cut(s)	229, 610, 823, 1163, 1216
HpyCH4IV	ACGT	2 cut(s)	52, 1072
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 449, 1025, 1196
HpyF3I	CTNAG	4 cut(s)	198, 412, 421, 858
HpySE526I	ACGT	2 cut(s)	52, 1072
Hsp92II	CATG	5 cut(s)	325, 351, 600, 723, 1239
HspAI	GCGC	2 cut(s)	275, 369
Ksp22I	TGATCA	1 cut(s)	546
KspAI	GTTAAC	1 cut(s)	1288
Kzo9I	GATC	3 cut(s)	344, 546, 751
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	193, 922, 950
LweI	GCATC	5 cut(s)	261, 402, 698, 862, 1028
MaeI	CTAG	2 cut(s)	270, 878
MaeII	ACGT	2 cut(s)	52, 1072
MaeIII	GTNAC	2 cut(s)	182, 1128
MalI	GATC	3 cut(s)	346, 548, 753
MboI	GATC	3 cut(s)	344, 546, 751
MboII	GAAGA	8 cut(s)	23, 56, 112, 329, 367, 774, 1039, 1112
MfeI	CAATTG	2 cut(s)	573, 999
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	1179
MluCI	AATT	4 cut(s)	567, 573, 651, 999
MmeI	TCCRAC	1 cut(s)	1243
MnlI	CCTC	8 cut(s)	15, 409, 599, 698, 853, 965, 1059, 1096
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	3 cut(s)	747, 836, 1287
MslI	CAYNNNNRTG	1 cut(s)	718
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	479, 633
MunI	CAATTG	2 cut(s)	573, 999
Mva1269I	GAATGC	2 cut(s)	371, 1254
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	122, 449, 1025, 1196
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	2 cut(s)	301, 1222
NdeII	GATC	3 cut(s)	344, 546, 751
NlaIII	CATG	5 cut(s)	325, 351, 600, 723, 1239
NmuCI	GTSAC	2 cut(s)	182, 1128
NspI	RCATGY	2 cut(s)	325, 1239
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	2 cut(s)	371, 1254
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	138, 628
PkrI	GCNGC	4 cut(s)	208, 451, 937, 940
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	7 cut(s)	231, 333, 521, 815, 948, 1213, 1351
RsaNI	GTAC	7 cut(s)	230, 332, 520, 814, 947, 1212, 1350
RseI	CAYNNNNRTG	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	747, 836, 1287
SatI	GCNGC	4 cut(s)	207, 450, 936, 939
Sau3AI	GATC	3 cut(s)	344, 546, 751
Sau96I	GGNCC	1 cut(s)	119
ScaI	AGTACT	1 cut(s)	1213
ScrFI	CCNGG	2 cut(s)	479, 633
SduI	GDGCHC	1 cut(s)	1179
SfaNI	GCATC	5 cut(s)	261, 402, 698, 862, 1028
SfcI	CTRYAG	3 cut(s)	936, 1215, 1367
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
Sse9I	AATT	4 cut(s)	567, 573, 651, 999
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	449, 452
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	270, 878
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	477, 631
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	5 cut(s)	229, 610, 823, 1163, 1216
TaiI	ACGT	2 cut(s)	55, 1075
TaqI	TCGA	2 cut(s)	734, 870
TasI	AATT	4 cut(s)	567, 573, 651, 999
TatI	WGTACW	4 cut(s)	229, 519, 1211, 1349
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	138, 628
Tru1I	TTAA	3 cut(s)	747, 836, 1287
Tru9I	TTAA	3 cut(s)	747, 836, 1287
TscAI	CASTG	1 cut(s)	1168
TseFI	GTSAC	2 cut(s)	182, 1128
TseI	GCWGC	3 cut(s)	206, 935, 938
Tsp45I	GTSAC	2 cut(s)	182, 1128
TspDTI	ATGAA	4 cut(s)	105, 166, 585, 1039
TspRI	CASTG	1 cut(s)	1168
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	2 cut(s)	325, 1239
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	2 cut(s)	270, 878
ZrmI	AGTACT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.