Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Forward (+)

1141928 .. 1147146

Gene Structure 5219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1012300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGGAGAAGACATTAAAAGGAGTCTCTTGGTAAAAGAGACAAGTGCCGGGGAAGAAGAGACTAGAGTTATTGATGGCGAAGAGGAATTGTCACTGAAAAGAAGGGTATGGATTGAAATCAAGAAGATGTGGCTGGTGGCTGGCCCTGCTATATTCACCAGAGTTGCGTCTTTCGGAACAAATGTCGTCAGTCAAGCGTTTATCGGTCACATTGGCTCTCTGGAGTTAGCGGCTTTTTCACTCGTGTTCACAGTACTTGTCAGGTTCGGAAACGGCATCTTGCTTGGCATGGCAAGTGCGCTGGAAACTCTCTGTGGTCAATCGTATGGTGCAAAACAGTACAACATGCTCGGGATACATCTTCAGAGGTCATGGATAGTACTGTGTGTAGGCACATTATTCCTTATTCCTCTTTTCGTCTTTACAACCCCCATTTTTGAGGCTTTGGGCCAAGCAGACAATATTTCAGAAGTTGCAGGATATATTTCTCTATGGGTAATCCCTGTGCTTTTTGCCTTTGTTGTATCATTTACCTGCCAAATGTACTTACAAGCGCAAAGCAAAAATATGATCGTTGCATATGTGTCAGCGGTTTCAATTGGAATCCACATCTTTCTTTGCTGGCTTTTGAGTGTGAAATTTAAGTTTGGGGTTCCCGGTGTGTTGGTGTCGACGATTATATCATATTGGTTACCCAACGTGGGTCAGCTTTTGTTTATTCTGTGTGGTGGATGCCCCGAAACATGGACAGGCTTCTCAATGTTAGCTTTTACTGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCATCCGGCGTTATGCTTTGTCTTGAGCTTTGGTACAACACAATCTTGGTCCTTTTAACGGGAAACATGGAAAGCGCTGAAGTTTCTATCGATGCCCTATCTATTTGCCTCAACATCGTGGGGTGGGAAATGATGATATCTCTCGGTTTCCTGGCTACAGCAAGTGTACGAGTGTCGAACGAGCTTGGAAGAGGTAGCTCAAAGGCGGCAAAGTTCTCGATTGTGGTTATTGTGTCGGTATCACTCTCCATTGGATTGGTGCTTTTCGTGCTTTTCTTATTCTTGAGGAAAAAACTTGCGTACATTTTCACCAACGATGAGGCTGTAGCTGACATGGTTGCTGAATTGTCTCCTTTGTTGGCCTTCTCCATACTGTTGAACAGCGTTCAACCCGTGCTCTCTGGAGTTGCTCTGGGAGCTGGATGGCAGAAATATGTAGCATATGTGAACCTAGGCTGCTATTACGTTATAGGGATCCCTGTTGGAGTTGTGCTTGGTTGGCCTCTAAAAATGCAAGTCAAAGGTGTTTGGATTGGAATGTTGTTTGGAACATTAGTCCAAACTATTGTGCTAATGATACTCACCTACAAGACTGATTGGGATAAACAGGTAGATATAGCTCGTAACCGCGTTAGCAGGTGGGGTCGAACAAATAACGAAGAATCGAATCCCGACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

495

Amino Acids

54.3

Weight (kDa)

6.04

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	49 - 209	4.3e-27	MatE
MatE	PF01554	271 - 431	1.1e-28	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1431
Acc36I	ACCTGC	2 cut(s)	542, 1431
AccI	GTMKAC	1 cut(s)	671
AccII	CGCG	1 cut(s)	1434
AciI	CCGC	4 cut(s)	230, 590, 1010, 1432
AclWI	GGATC	2 cut(s)	1273, 1286
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	347, 903
AfaI	GTAC	7 cut(s)	255, 341, 381, 545, 839, 972, 1106
AfeI	AGCGCT	1 cut(s)	880
AfiI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
AgsI	TTSAA	4 cut(s)	116, 597, 1183, 1193
AjnI	CCWGG	1 cut(s)	954
AluBI	AGCT	9 cut(s)	709, 767, 796, 832, 988, 1002, 1133, 1223, 1424
AluI	AGCT	9 cut(s)	709, 767, 796, 832, 988, 1002, 1133, 1223, 1424
Alw21I	GWGCWC	1 cut(s)	1203
Alw26I	GTCTC	4 cut(s)	29, 32, 53, 1158
AlwI	GGATC	2 cut(s)	1273, 1286
Ama87I	CYCGRG	1 cut(s)	350
Aor51HI	AGCGCT	1 cut(s)	880
AoxI	GGCC	4 cut(s)	142, 448, 1164, 1304
ApeKI	GCWGC	1 cut(s)	1260
ApoI	RAATTY	1 cut(s)	638
AspA2I	CCTAGG	1 cut(s)	1255
AspLEI	GCGC	3 cut(s)	301, 556, 881
AspS9I	GGNCC	3 cut(s)	143, 448, 853
AsuC2I	CCSGG	2 cut(s)	49, 657
AsuHPI	GGTGA	3 cut(s)	148, 1105, 1378
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	853
AvrII	CCTAGG	1 cut(s)	1255
BamHI	GGATCC	1 cut(s)	1278
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	1203
BbvI	GCAGC	1 cut(s)	1247
BccI	CCATC	2 cut(s)	68, 1221
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	1002, 1036
BciT130I	CCWGG	1 cut(s)	956
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	49, 657
BcoDI	GTCTC	4 cut(s)	29, 32, 53, 1158
BfaI	CTAG	2 cut(s)	63, 1256
BfmI	CTRYAG	2 cut(s)	960, 1128
BfoI	RGCGCY	1 cut(s)	882
BfuAI	ACCTGC	2 cut(s)	542, 1431
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	231, 1011, 1261
BlnI	CCTAGG	1 cut(s)	1255
BlsI	GCNGC	3 cut(s)	232, 1012, 1262
BmcAI	AGTACT	2 cut(s)	255, 381
Bme1390I	CCNGG	3 cut(s)	49, 657, 956
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	143, 448, 853
BmiI	GGNNCC	2 cut(s)	654, 1280
BmrFI	CCNGG	3 cut(s)	49, 657, 956
BmsI	GCATC	3 cut(s)	285, 722, 886
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	2 cut(s)	242, 1227
BpuEI	CTTGAG	2 cut(s)	848, 1108
BpuMI	CCSGG	2 cut(s)	49, 657
Bsa29I	ATCGAT	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	48, 1255
Bsc4I	CCNNNNNNNGG	3 cut(s)	701, 744, 862
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	956
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	2 cut(s)	48, 1255
BseGI	GGATG	4 cut(s)	737, 790, 806, 1232
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
BseXI	GCAGC	1 cut(s)	1247
Bsh1236I	CGCG	1 cut(s)	1434
BshFI	GGCC	4 cut(s)	144, 450, 1166, 1306
BshVI	ATCGAT	1 cut(s)	894
BsiHKAI	GWGCWC	1 cut(s)	1203
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	48, 657, 810
BslI	CCNNNNNNNGG	3 cut(s)	701, 744, 862
BsmAI	GTCTC	4 cut(s)	29, 32, 53, 1158
BsnI	GGCC	4 cut(s)	144, 450, 1166, 1306
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	1203
Bsp143I	GATC	3 cut(s)	570, 775, 1278
BspACI	CCGC	4 cut(s)	230, 590, 1010, 1432
BspANI	GGCC	4 cut(s)	144, 450, 1166, 1306
BspDI	ATCGAT	1 cut(s)	894
BspFNI	CGCG	1 cut(s)	1434
BspLI	GGNNCC	2 cut(s)	654, 1280
BspMI	ACCTGC	2 cut(s)	542, 1431
BspPI	GGATC	2 cut(s)	1273, 1286
BssECI	CCNNGG	2 cut(s)	48, 1255
BssMI	GATC	3 cut(s)	570, 775, 1278
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	1255
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	4 cut(s)	253, 339, 384, 1179
Bst6I	CTCTTC	3 cut(s)	51, 75, 988
BstC8I	GCNNGC	2 cut(s)	142, 623
BstEII	GGTNACC	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	737, 790, 806, 1232
BstFNI	CGCG	1 cut(s)	1434
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	3 cut(s)	301, 556, 881
BstKTI	GATC	3 cut(s)	573, 778, 1281
BstMAI	GTCTC	4 cut(s)	29, 32, 53, 1158
BstMBI	GATC	3 cut(s)	570, 775, 1278
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 1072, 1220, 1303
BstNI	CCWGG	1 cut(s)	956
BstNSI	RCATGY	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	690
BstSCI	CCNGG	3 cut(s)	47, 655, 954
BstSFI	CTRYAG	2 cut(s)	960, 1128
BstUI	CGCG	1 cut(s)	1434
BstV1I	GCAGC	1 cut(s)	1247
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	1278
BstXI	CCANNNNNNTGG	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1278
Bsu15I	ATCGAT	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	144, 450, 1166, 1306
BsuTUI	ATCGAT	1 cut(s)	894
BtsCI	GGATG	4 cut(s)	737, 790, 806, 1232
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	2 cut(s)	542, 1431
Cac8I	GCNNGC	2 cut(s)	142, 623
CfoI	GCGC	3 cut(s)	301, 556, 881
Cfr13I	GGNCC	3 cut(s)	143, 448, 853
ClaI	ATCGAT	1 cut(s)	894
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	7 cut(s)	254, 340, 380, 544, 838, 971, 1105
CviAII	CATG	7 cut(s)	289, 346, 372, 744, 871, 1138, 1482
CviQI	GTAC	7 cut(s)	254, 340, 380, 544, 838, 971, 1105
DpnI	GATC	3 cut(s)	572, 777, 1280
DpnII	GATC	3 cut(s)	570, 775, 1278
Eam1104I	CTCTTC	3 cut(s)	51, 75, 988
EarI	CTCTTC	3 cut(s)	51, 75, 988
Eco130I	CCWWGG	1 cut(s)	1255
Eco32I	GATATC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	853
Eco47III	AGCGCT	1 cut(s)	880
Eco57I	CTGAAG	2 cut(s)	347, 903
Eco88I	CYCGRG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	954
EcoRV	GATATC	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	1255
ErhI	CCWWGG	1 cut(s)	1255
FaeI	CATG	7 cut(s)	292, 349, 375, 747, 874, 1141, 1485
FatI	CATG	7 cut(s)	288, 345, 371, 743, 870, 1137, 1481
FauNDI	CATATG	2 cut(s)	580, 1246
FblI	GTMKAC	1 cut(s)	671
Fnu4HI	GCNGC	3 cut(s)	231, 1011, 1261
FokI	GGATG	4 cut(s)	744, 793, 797, 1239
Fsp4HI	GCNGC	3 cut(s)	231, 1011, 1261
FspBI	CTAG	2 cut(s)	63, 1256
GlaI	GCGC	3 cut(s)	300, 555, 880
GluI	GCNGC	3 cut(s)	231, 1011, 1261
GsuI	CTGGAG	2 cut(s)	242, 1227
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	4 cut(s)	144, 450, 1166, 1306
HapII	CCGG	3 cut(s)	48, 657, 810
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	3 cut(s)	301, 556, 881
Hin1II	CATG	7 cut(s)	292, 349, 375, 747, 874, 1141, 1485
Hin6I	GCGC	3 cut(s)	299, 554, 879
HinP1I	GCGC	3 cut(s)	299, 554, 879
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	22, 603, 1466, 1471
HpaII	CCGG	3 cut(s)	48, 657, 810
HphI	GGTGA	3 cut(s)	148, 1105, 1378
Hpy166II	GTNNAC	4 cut(s)	249, 672, 971, 1252
Hpy188I	TCNGA	4 cut(s)	176, 269, 366, 469
Hpy188III	TCNNGA	8 cut(s)	121, 221, 352, 827, 1021, 1087, 1206, 1475
Hpy8I	GTNNAC	4 cut(s)	249, 672, 971, 1252
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	96, 1177
HpyCH4III	ACNGT	4 cut(s)	253, 339, 384, 1179
HpyCH4IV	ACGT	2 cut(s)	699, 1269
HpyCH4V	TGCA	4 cut(s)	332, 476, 578, 1318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 1072, 1220, 1303
HpySE526I	ACGT	2 cut(s)	699, 1269
Hsp92II	CATG	7 cut(s)	292, 349, 375, 747, 874, 1141, 1485
HspAI	GCGC	3 cut(s)	299, 554, 879
Kzo9I	GATC	3 cut(s)	570, 775, 1278
LmnI	GCTCC	1 cut(s)	1220
Lsp1109I	GCAGC	1 cut(s)	1247
LweI	GCATC	3 cut(s)	285, 722, 886
MaeI	CTAG	2 cut(s)	63, 1256
MaeII	ACGT	2 cut(s)	699, 1269
MaeIII	GTNAC	4 cut(s)	90, 206, 690, 1427
MalI	GATC	3 cut(s)	572, 777, 1280
MboI	GATC	3 cut(s)	570, 775, 1278
MboII	GAAGA	8 cut(s)	20, 65, 68, 92, 136, 353, 1005, 1475
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	1278
MhlI	GDGCHC	1 cut(s)	1203
MluCI	AATT	4 cut(s)	86, 597, 638, 1148
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	1267
MnlI	CCTC	9 cut(s)	76, 360, 420, 433, 923, 989, 1083, 1117, 1317
MseI	TTAA	3 cut(s)	15, 642, 860
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	3 cut(s)	48, 657, 810
MspR9I	CCNGG	3 cut(s)	49, 657, 956
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	956
MvnI	CGCG	1 cut(s)	1434
MwoI	GCNNNNNNNGC	4 cut(s)	146, 1072, 1220, 1303
NciI	CCSGG	2 cut(s)	49, 657
NdeI	CATATG	2 cut(s)	580, 1246
NdeII	GATC	3 cut(s)	570, 775, 1278
NlaIII	CATG	7 cut(s)	292, 349, 375, 747, 874, 1141, 1485
NlaIV	GGNNCC	2 cut(s)	654, 1280
NmuCI	GTSAC	2 cut(s)	90, 206
NspI	RCATGY	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	1431
PfeI	GAWTC	3 cut(s)	603, 1466, 1471
PkrI	GCNGC	3 cut(s)	232, 1012, 1262
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	954
PspEI	GGTNACC	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	2 cut(s)	654, 1280
PspPI	GGNCC	3 cut(s)	143, 448, 853
PsuI	RGATCY	1 cut(s)	1278
RsaI	GTAC	7 cut(s)	255, 341, 381, 545, 839, 972, 1106
RsaNI	GTAC	7 cut(s)	254, 340, 380, 544, 838, 971, 1105
SalI	GTCGAC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	15, 642, 860
SatI	GCNGC	3 cut(s)	231, 1011, 1261
Sau3AI	GATC	3 cut(s)	570, 775, 1278
Sau96I	GGNCC	3 cut(s)	143, 448, 853
ScaI	AGTACT	2 cut(s)	255, 381
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	49, 657, 956
SduI	GDGCHC	1 cut(s)	1203
SfaNI	GCATC	3 cut(s)	285, 722, 886
SfcI	CTRYAG	2 cut(s)	960, 1128
SinI	GGWCC	1 cut(s)	853
SmlI	CTYRAG	2 cut(s)	827, 1087
SmoI	CTYRAG	2 cut(s)	827, 1087
Sse9I	AATT	4 cut(s)	86, 597, 638, 1148
SsiI	CCGC	4 cut(s)	230, 590, 1010, 1432
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	63, 1256
StyD4I	CCNGG	3 cut(s)	47, 655, 954
StyI	CCWWGG	1 cut(s)	1255
TaaI	ACNGT	4 cut(s)	253, 339, 384, 1179
TaiI	ACGT	2 cut(s)	702, 1272
TaqI	TCGA	6 cut(s)	671, 894, 980, 1022, 1450, 1469
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	86, 597, 638, 1148
TatI	WGTACW	4 cut(s)	253, 339, 379, 543
TauI	GCSGC	2 cut(s)	233, 1013
TfiI	GAWTC	3 cut(s)	603, 1466, 1471
Tru1I	TTAA	3 cut(s)	15, 642, 860
Tru9I	TTAA	3 cut(s)	15, 642, 860
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	90, 206
TseI	GCWGC	1 cut(s)	1260
Tsp45I	GTSAC	2 cut(s)	90, 206
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	1255
XmiI	GTMKAC	1 cut(s)	671
XspI	CTAG	2 cut(s)	63, 1256
ZrmI	AGTACT	2 cut(s)	255, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.