Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110 |
| malus_domestica | MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1 |
| prunus_persica | Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 |
| pyrus_communis | pycom12g01200 |
| rosa_chinensis | RchiOBHm_Chr3g0495631 |
| rosa_laevigata | RLG00000022605 |
| rosa_multiflora | Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038 |
| rosa_roxburghii | Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260 |
| rosa_rugosa | Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900 |
| rosa_samantha | Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400 |
| rosa_wichuraiana | Rw3G028170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 570 |
| Acc36I | ACCTGC | 1 cut(s) | 890 |
| AccII | CGCG | 2 cut(s) | 1776, 1782 |
| AciI | CCGC | 2 cut(s) | 578, 1780 |
| AclWI | GGATC | 1 cut(s) | 1803 |
| AcoI | YGGCCR | 1 cut(s) | 338 |
| AcsI | RAATTY | 1 cut(s) | 986 |
| AcuI | CTGAAG | 2 cut(s) | 695, 1251 |
| AcvI | CACGTG | 1 cut(s) | 1830 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 8 cut(s) | 32, 44, 603, 689, 729, 893, 1187, 1320 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 272, 1049, 1092, 1210 |
| AflIII | ACRYGT | 1 cut(s) | 1827 |
| AgsI | TTSAA | 5 cut(s) | 77, 464, 945, 1531, 1541 |
| AjiI | CACGTC | 1 cut(s) | 344 |
| AjnI | CCWGG | 2 cut(s) | 271, 1047 |
| Alw21I | GWGCWC | 1 cut(s) | 1551 |
| Alw26I | GTCTC | 5 cut(s) | 377, 380, 401, 1178, 1506 |
| AlwI | GGATC | 1 cut(s) | 1803 |
| Ama87I | CYCGRG | 1 cut(s) | 1175 |
| AoxI | GGCC | 4 cut(s) | 338, 490, 796, 1512 |
| ApeKI | GCWGC | 5 cut(s) | 298, 571, 1307, 1310, 1358 |
| ApoI | RAATTY | 1 cut(s) | 986 |
| AseI | ATTAAT | 1 cut(s) | 162 |
| AspLEI | GCGC | 3 cut(s) | 571, 649, 904 |
| AspS9I | GGNCC | 3 cut(s) | 491, 1201, 1708 |
| AsuC2I | CCSGG | 1 cut(s) | 1005 |
| AsuHPI | GGTGA | 4 cut(s) | 496, 589, 1453, 1726 |
| AsuNHI | GCTAGC | 1 cut(s) | 574 |
| AvaI | CYCGRG | 1 cut(s) | 1175 |
| AvaII | GGWCC | 2 cut(s) | 1201, 1708 |
| BalI | TGGCCA | 1 cut(s) | 340 |
| BauI | CACGAG | 1 cut(s) | 590 |
| BbrPI | CACGTG | 1 cut(s) | 1830 |
| Bbv12I | GWGCWC | 1 cut(s) | 1551 |
| BbvI | GCAGC | 5 cut(s) | 310, 583, 1294, 1322, 1370 |
| BccI | CCATC | 2 cut(s) | 68, 1569 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1350, 1384 |
| BciT130I | CCWGG | 2 cut(s) | 273, 1049 |
| BciVI | GTATCC | 1 cut(s) | 696 |
| BclI | TGATCA | 1 cut(s) | 240 |
| BcnI | CCSGG | 1 cut(s) | 1005 |
| BcoDI | GTCTC | 5 cut(s) | 377, 380, 401, 1178, 1506 |
| BfaI | CTAG | 5 cut(s) | 227, 327, 411, 575, 1604 |
| BfmI | CTRYAG | 2 cut(s) | 1308, 1476 |
| BfuAI | ACCTGC | 1 cut(s) | 890 |
| BfuI | GTATCC | 1 cut(s) | 696 |
| BisI | GCNGC | 6 cut(s) | 299, 572, 579, 1308, 1311, 1359 |
| BlsI | GCNGC | 6 cut(s) | 300, 573, 580, 1309, 1312, 1360 |
| BmcAI | AGTACT | 2 cut(s) | 44, 729 |
| Bme1390I | CCNGG | 3 cut(s) | 273, 1005, 1049 |
| Bme18I | GGWCC | 2 cut(s) | 1201, 1708 |
| BmeT110I | CYCGRG | 1 cut(s) | 1175 |
| BmgBI | CACGTC | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 3 cut(s) | 491, 1201, 1708 |
| BmiI | GGNNCC | 2 cut(s) | 189, 1002 |
| BmrFI | CCNGG | 3 cut(s) | 273, 1005, 1049 |
| BmsI | GCATC | 3 cut(s) | 633, 1070, 1234 |
| BmtI | GCTAGC | 1 cut(s) | 578 |
| BoxI | GACNNNNGTC | 1 cut(s) | 171 |
| BpmI | CTGGAG | 2 cut(s) | 294, 1575 |
| BpuEI | CTTGAG | 3 cut(s) | 1124, 1336, 1456 |
| BpuMI | CCSGG | 1 cut(s) | 1005 |
| Bsa29I | ATCGAT | 1 cut(s) | 1242 |
| BsaAI | YACGTR | 2 cut(s) | 34, 1830 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 2 cut(s) | 272, 1048 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 272, 1049, 1092, 1210 |
| Bse1I | ACTGG | 2 cut(s) | 394, 974 |
| BseBI | CCWGG | 2 cut(s) | 273, 1049 |
| BseCI | ATCGAT | 1 cut(s) | 1242 |
| BseDI | CCNNGG | 2 cut(s) | 272, 1048 |
| BseGI | GGATG | 5 cut(s) | 29, 262, 1085, 1138, 1580 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 272, 1049, 1092, 1210 |
| BseMII | CTCAG | 1 cut(s) | 1485 |
| BseNI | ACTGG | 2 cut(s) | 394, 974 |
| BseRI | GAGGAG | 1 cut(s) | 184 |
| BseXI | GCAGC | 5 cut(s) | 310, 583, 1294, 1322, 1370 |
| Bsh1236I | CGCG | 2 cut(s) | 1776, 1782 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1780 |
| BshFI | GGCC | 4 cut(s) | 340, 492, 798, 1514 |
| BshVI | ATCGAT | 1 cut(s) | 1242 |
| BsiEI | CGRYCG | 1 cut(s) | 1780 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1551 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1175 |
| BsiSI | CCGG | 2 cut(s) | 185, 1005 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 272, 1049, 1092, 1210 |
| BsmAI | GTCTC | 5 cut(s) | 377, 380, 401, 1178, 1506 |
| BsnI | GGCC | 4 cut(s) | 340, 492, 798, 1514 |
| BsoBI | CYCGRG | 1 cut(s) | 1175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1551 |
| Bsp143I | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| Bsp68I | TCGCGA | 1 cut(s) | 1776 |
| BspACI | CCGC | 2 cut(s) | 578, 1780 |
| BspANI | GGCC | 4 cut(s) | 340, 492, 798, 1514 |
| BspCNI | CTCAG | 1 cut(s) | 1486 |
| BspDI | ATCGAT | 1 cut(s) | 1242 |
| BspFNI | CGCG | 2 cut(s) | 1776, 1782 |
| BspLI | GGNNCC | 2 cut(s) | 189, 1002 |
| BspMAI | CTGCAG | 1 cut(s) | 1312 |
| BspMI | ACCTGC | 1 cut(s) | 890 |
| BspOI | GCTAGC | 1 cut(s) | 578 |
| BspPI | GGATC | 1 cut(s) | 1803 |
| BsrI | ACTGG | 2 cut(s) | 394, 974 |
| BssECI | CCNNGG | 2 cut(s) | 272, 1048 |
| BssMI | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssSI | CACGAG | 1 cut(s) | 590 |
| Bst2BI | CACGAG | 1 cut(s) | 590 |
| Bst2UI | CCWGG | 2 cut(s) | 273, 1049 |
| Bst4CI | ACNGT | 4 cut(s) | 601, 687, 732, 1527 |
| Bst6I | CTCTTC | 3 cut(s) | 228, 258, 399 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstBAI | YACGTR | 2 cut(s) | 34, 1830 |
| BstC8I | GCNNGC | 4 cut(s) | 490, 576, 1609, 1774 |
| BstDEI | CTNAG | 1 cut(s) | 1494 |
| BstEII | GGTNACC | 1 cut(s) | 1038 |
| BstF5I | GGATG | 5 cut(s) | 29, 262, 1085, 1138, 1580 |
| BstFNI | CGCG | 2 cut(s) | 1776, 1782 |
| BstHHI | GCGC | 3 cut(s) | 571, 649, 904 |
| BstKTI | GATC | 5 cut(s) | 243, 921, 1126, 1392, 1798 |
| BstMAI | GTCTC | 5 cut(s) | 377, 380, 401, 1178, 1506 |
| BstMBI | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| BstMCI | CGRYCG | 1 cut(s) | 1780 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 494, 575, 1420, 1568 |
| BstNI | CCWGG | 2 cut(s) | 273, 1049 |
| BstNSI | RCATGY | 2 cut(s) | 697, 747 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 171 |
| BstPI | GGTNACC | 1 cut(s) | 1038 |
| BstSCI | CCNGG | 3 cut(s) | 271, 1003, 1047 |
| BstSFI | CTRYAG | 2 cut(s) | 1308, 1476 |
| BstSNI | TACGTA | 1 cut(s) | 34 |
| BstUI | CGCG | 2 cut(s) | 1776, 1782 |
| BstV1I | GCAGC | 5 cut(s) | 310, 583, 1294, 1322, 1370 |
| Bsu15I | ATCGAT | 1 cut(s) | 1242 |
| BsuI | GTATCC | 1 cut(s) | 696 |
| BsuRI | GGCC | 4 cut(s) | 340, 492, 798, 1514 |
| BsuTUI | ATCGAT | 1 cut(s) | 1242 |
| BtgZI | GCGATG | 1 cut(s) | 441 |
| BtrI | CACGTC | 1 cut(s) | 344 |
| BtsCI | GGATG | 5 cut(s) | 29, 262, 1085, 1138, 1580 |
| BtsIMutI | CAGTG | 2 cut(s) | 250, 440 |
| BtuMI | TCGCGA | 1 cut(s) | 1776 |
| BveI | ACCTGC | 1 cut(s) | 890 |
| Cac8I | GCNNGC | 4 cut(s) | 490, 576, 1609, 1774 |
| CfoI | GCGC | 3 cut(s) | 571, 649, 904 |
| Cfr13I | GGNCC | 3 cut(s) | 491, 1201, 1708 |
| ClaI | ATCGAT | 1 cut(s) | 1242 |
| CseI | GACGC | 2 cut(s) | 77, 754 |
| Csp6I | GTAC | 8 cut(s) | 31, 43, 602, 688, 728, 892, 1186, 1319 |
| CviAII | CATG | 7 cut(s) | 7, 637, 694, 720, 744, 1092, 1219 |
| CviQI | GTAC | 8 cut(s) | 31, 43, 602, 688, 728, 892, 1186, 1319 |
| DdeI | CTNAG | 1 cut(s) | 1494 |
| DpnI | GATC | 5 cut(s) | 242, 920, 1125, 1391, 1797 |
| DpnII | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| EaeI | YGGCCR | 1 cut(s) | 338 |
| Eam1104I | CTCTTC | 3 cut(s) | 228, 258, 399 |
| EarI | CTCTTC | 3 cut(s) | 228, 258, 399 |
| Eco105I | TACGTA | 1 cut(s) | 34 |
| Eco32I | GATATC | 1 cut(s) | 1290 |
| Eco47I | GGWCC | 2 cut(s) | 1201, 1708 |
| Eco57I | CTGAAG | 2 cut(s) | 695, 1251 |
| Eco72I | CACGTG | 1 cut(s) | 1830 |
| Eco88I | CYCGRG | 1 cut(s) | 1175 |
| Eco91I | GGTNACC | 1 cut(s) | 1038 |
| EcoO65I | GGTNACC | 1 cut(s) | 1038 |
| EcoRII | CCWGG | 2 cut(s) | 271, 1047 |
| EcoRV | GATATC | 1 cut(s) | 1290 |
| FaeI | CATG | 7 cut(s) | 10, 640, 697, 723, 747, 1095, 1222 |
| FatI | CATG | 7 cut(s) | 6, 636, 693, 719, 743, 1091, 1218 |
| FauNDI | CATATG | 2 cut(s) | 928, 1594 |
| FbaI | TGATCA | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 6 cut(s) | 299, 572, 579, 1308, 1311, 1359 |
| FokI | GGATG | 5 cut(s) | 36, 249, 1092, 1145, 1587 |
| Fsp4HI | GCNGC | 6 cut(s) | 299, 572, 579, 1308, 1311, 1359 |
| FspBI | CTAG | 5 cut(s) | 227, 327, 411, 575, 1604 |
| FspI | TGCGCA | 1 cut(s) | 570 |
| GlaI | GCGC | 3 cut(s) | 570, 648, 903 |
| GluI | GCNGC | 6 cut(s) | 299, 572, 579, 1308, 1311, 1359 |
| GsuI | CTGGAG | 2 cut(s) | 294, 1575 |
| HaeIII | GGCC | 4 cut(s) | 340, 492, 798, 1514 |
| HapII | CCGG | 2 cut(s) | 185, 1005 |
| HgaI | GACGC | 2 cut(s) | 77, 754 |
| HhaI | GCGC | 3 cut(s) | 571, 649, 904 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 7 cut(s) | 10, 640, 697, 723, 747, 1095, 1222 |
| Hin6I | GCGC | 3 cut(s) | 569, 647, 902 |
| HinP1I | GCGC | 3 cut(s) | 569, 647, 902 |
| HincII | GTYRAC | 2 cut(s) | 1020, 1786 |
| HindII | GTYRAC | 2 cut(s) | 1020, 1786 |
| HindIII | AAGCTT | 1 cut(s) | 1142 |
| HinfI | GANTC | 4 cut(s) | 370, 951, 1627, 1814 |
| HpaI | GTTAAC | 1 cut(s) | 1786 |
| HpaII | CCGG | 2 cut(s) | 185, 1005 |
| HphI | GGTGA | 4 cut(s) | 496, 589, 1453, 1726 |
| Hpy166II | GTNNAC | 7 cut(s) | 31, 176, 597, 1020, 1319, 1600, 1786 |
| Hpy188I | TCNGA | 4 cut(s) | 240, 524, 714, 817 |
| Hpy188III | TCNNGA | 5 cut(s) | 1175, 1369, 1435, 1554, 1775 |
| Hpy8I | GTNNAC | 7 cut(s) | 31, 176, 597, 1020, 1319, 1600, 1786 |
| Hpy99I | CGWCG | 5 cut(s) | 68, 71, 271, 1274, 1469 |
| HpyAV | CCTTC | 5 cut(s) | 106, 444, 1214, 1525, 1667 |
| HpyCH4III | ACNGT | 4 cut(s) | 601, 687, 732, 1527 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 343, 1829 |
| HpyCH4V | TGCA | 8 cut(s) | 298, 680, 824, 863, 926, 1310, 1451, 1666 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 494, 575, 1420, 1568 |
| HpyF3I | CTNAG | 1 cut(s) | 1494 |
| HpySE526I | ACGT | 3 cut(s) | 33, 343, 1829 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 7 cut(s) | 10, 640, 697, 723, 747, 1095, 1222 |
| HspAI | GCGC | 3 cut(s) | 569, 647, 902 |
| Ksp22I | TGATCA | 1 cut(s) | 240 |
| KspAI | GTTAAC | 1 cut(s) | 1786 |
| Kzo9I | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| LmnI | GCTCC | 2 cut(s) | 193, 1568 |
| Lsp1109I | GCAGC | 5 cut(s) | 310, 583, 1294, 1322, 1370 |
| LweI | GCATC | 3 cut(s) | 633, 1070, 1234 |
| MaeI | CTAG | 5 cut(s) | 227, 327, 411, 575, 1604 |
| MaeII | ACGT | 3 cut(s) | 33, 343, 1829 |
| MaeIII | GTNAC | 4 cut(s) | 322, 438, 554, 1038 |
| MalI | GATC | 5 cut(s) | 242, 920, 1125, 1391, 1797 |
| MboI | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| MboII | GAAGA | 7 cut(s) | 215, 245, 413, 416, 443, 484, 701 |
| MfeI | CAATTG | 1 cut(s) | 945 |
| MhlI | GDGCHC | 1 cut(s) | 1551 |
| MlsI | TGGCCA | 1 cut(s) | 340 |
| MluCI | AATT | 8 cut(s) | 258, 292, 414, 434, 780, 819, 945, 986 |
| MluNI | TGGCCA | 1 cut(s) | 340 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MmeI | TCCRAC | 2 cut(s) | 376, 1615 |
| Mox20I | TGGCCA | 1 cut(s) | 340 |
| MscI | TGGCCA | 1 cut(s) | 340 |
| MseI | TTAA | 6 cut(s) | 162, 291, 363, 990, 1263, 1785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| Msp20I | TGGCCA | 1 cut(s) | 340 |
| MspI | CCGG | 2 cut(s) | 185, 1005 |
| MspR9I | CCNGG | 3 cut(s) | 273, 1005, 1049 |
| MunI | CAATTG | 1 cut(s) | 945 |
| MvaI | CCWGG | 2 cut(s) | 273, 1049 |
| MvnI | CGCG | 2 cut(s) | 1776, 1782 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 494, 575, 1420, 1568 |
| NciI | CCSGG | 1 cut(s) | 1005 |
| NdeI | CATATG | 2 cut(s) | 928, 1594 |
| NdeII | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| NheI | GCTAGC | 1 cut(s) | 574 |
| NlaIII | CATG | 7 cut(s) | 10, 640, 697, 723, 747, 1095, 1222 |
| NlaIV | GGNNCC | 2 cut(s) | 189, 1002 |
| NmuCI | GTSAC | 2 cut(s) | 438, 554 |
| NruI | TCGCGA | 1 cut(s) | 1776 |
| NsbI | TGCGCA | 1 cut(s) | 570 |
| NspI | RCATGY | 2 cut(s) | 697, 747 |
| PaeR7I | CTCGAG | 1 cut(s) | 1175 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 597 |
| PfeI | GAWTC | 3 cut(s) | 951, 1627, 1814 |
| PkrI | GCNGC | 6 cut(s) | 300, 573, 580, 1309, 1312, 1360 |
| PleI | GAGTC | 1 cut(s) | 378 |
| PmaCI | CACGTG | 1 cut(s) | 1830 |
| PmlI | CACGTG | 1 cut(s) | 1830 |
| PpsI | GAGTC | 1 cut(s) | 378 |
| Ppu21I | YACGTR | 2 cut(s) | 34, 1830 |
| PshAI | GACNNNNGTC | 1 cut(s) | 171 |
| PshBI | ATTAAT | 1 cut(s) | 162 |
| Psp6I | CCWGG | 2 cut(s) | 271, 1047 |
| PspCI | CACGTG | 1 cut(s) | 1830 |
| PspEI | GGTNACC | 1 cut(s) | 1038 |
| PspGI | CCWGG | 2 cut(s) | 271, 1047 |
| PspN4I | GGNNCC | 2 cut(s) | 189, 1002 |
| PspPI | GGNCC | 3 cut(s) | 491, 1201, 1708 |
| PstI | CTGCAG | 1 cut(s) | 1312 |
| RruI | TCGCGA | 1 cut(s) | 1776 |
| RsaI | GTAC | 8 cut(s) | 32, 44, 603, 689, 729, 893, 1187, 1320 |
| RsaNI | GTAC | 8 cut(s) | 31, 43, 602, 688, 728, 892, 1186, 1319 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 6 cut(s) | 162, 291, 363, 990, 1263, 1785 |
| SatI | GCNGC | 6 cut(s) | 299, 572, 579, 1308, 1311, 1359 |
| Sau3AI | GATC | 5 cut(s) | 240, 918, 1123, 1389, 1795 |
| Sau96I | GGNCC | 3 cut(s) | 491, 1201, 1708 |
| ScaI | AGTACT | 2 cut(s) | 44, 729 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 3 cut(s) | 273, 1005, 1049 |
| SduI | GDGCHC | 1 cut(s) | 1551 |
| SfaNI | GCATC | 3 cut(s) | 633, 1070, 1234 |
| SfcI | CTRYAG | 2 cut(s) | 1308, 1476 |
| Sfr274I | CTCGAG | 1 cut(s) | 1175 |
| SinI | GGWCC | 2 cut(s) | 1201, 1708 |
| SlaI | CTCGAG | 1 cut(s) | 1175 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| SmlI | CTYRAG | 4 cut(s) | 1139, 1175, 1351, 1435 |
| SmoI | CTYRAG | 4 cut(s) | 1139, 1175, 1351, 1435 |
| SnaBI | TACGTA | 1 cut(s) | 34 |
| Sse9I | AATT | 8 cut(s) | 258, 292, 414, 434, 780, 819, 945, 986 |
| SsiI | CCGC | 2 cut(s) | 578, 1780 |
| SspI | AATATT | 1 cut(s) | 80 |
| SspMI | CTAG | 5 cut(s) | 227, 327, 411, 575, 1604 |
| StyD4I | CCNGG | 3 cut(s) | 271, 1003, 1047 |
| TaaI | ACNGT | 4 cut(s) | 601, 687, 732, 1527 |
| TaiI | ACGT | 3 cut(s) | 36, 346, 1832 |
| TaqII | GACCGA | 1 cut(s) | 542 |
| TasI | AATT | 8 cut(s) | 258, 292, 414, 434, 780, 819, 945, 986 |
| TatI | WGTACW | 4 cut(s) | 42, 687, 727, 891 |
| TauI | GCSGC | 1 cut(s) | 581 |
| TfiI | GAWTC | 3 cut(s) | 951, 1627, 1814 |
| Tru1I | TTAA | 6 cut(s) | 162, 291, 363, 990, 1263, 1785 |
| Tru9I | TTAA | 6 cut(s) | 162, 291, 363, 990, 1263, 1785 |
| TscAI | CASTG | 2 cut(s) | 250, 447 |
| TseFI | GTSAC | 2 cut(s) | 438, 554 |
| TseI | GCWGC | 5 cut(s) | 298, 571, 1307, 1310, 1358 |
| Tsp45I | GTSAC | 2 cut(s) | 438, 554 |
| TspDTI | ATGAA | 5 cut(s) | 23, 75, 251, 444, 998 |
| TspGWI | ACGGA | 1 cut(s) | 255 |
| TspRI | CASTG | 2 cut(s) | 250, 447 |
| VpaK11BI | GGWCC | 2 cut(s) | 1201, 1708 |
| VspI | ATTAAT | 1 cut(s) | 162 |
| XapI | RAATTY | 1 cut(s) | 986 |
| XceI | RCATGY | 2 cut(s) | 697, 747 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 13 |
| XhoI | CTCGAG | 1 cut(s) | 1175 |
| XspI | CTAG | 5 cut(s) | 227, 327, 411, 575, 1604 |
| ZrmI | AGTACT | 2 cut(s) | 44, 729 |