Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Reverse (-)

43149390 .. 43155098

Gene Structure 5709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGGGAGGAAGACATAAAGAGGAAACTGCTGATAAAGGGAGAAGATGAACGTGAACACGATTTGGGTTTGCAATACAGAGTGTGGAATGAAAGCAAGAAGATTTGGGTGATAGCTGGACCTGCTATATTCACCAGATTCTCTACTTTTGGAACAAATGTGGTCAGTCAAGCCTTCATTGGTCACATTGGCTCTACTGAGTTAGCTGCATATTCACTCGTCTTTACTGTACTGGTCAGGTTCGCAAATGGCATCCTGCTGGGAATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAATCATATGGTGCAAAACAATATGACATGCTTGGGGTACATCTTCAGAGATCATGGATAGTGTTGTTTGTCAGCGCATTCTTCCTTGTTCCTATTTGCATCTTTACAACTCCAATCTTAGAGGCCTTAGGACAGGAACAGAATATTGCACAAGTGGCGGGCTATATTTCTCTCTGGGTAATCCCGGTGATTTTCGCCTTTGTTTTATCCTTTACCTGCCAAATGTACTTGCAAGCACAGAGCAAAAATATGATCATAGCTTACTTGTCCGCAATTTCAATTGCAATCCACATCCTCCTTTCATGGCTTTTGACTGTGAAATATCAGCTTGGGATTCCTGGCGCAATGGTGTCCACAATTTTAGCATTTTGGATTCCCAACATTGGTCAACTTTTATTTGTTATATGTGGAGGATGCCCACAGACATGGAAAGGCTTCTCGATGTTAGCTTTTAAAGATCTCTGGGATGTCGTCAAGCTTTCTCTGTCTTCTGGTGTTATGCTTTGTCTGGAGCTTTGGTACAATACGGTCTTGGTTCTTTTAACTGGAAGTATGGAAAATGCTGAGGTTTCTATCGATGCTCTAGCTATCTGTCTCAACATCAATGGGTGGGAAATGATGATATCCCTTGGCTTCTTGGCTGCAGCAAGTGTACGAGTGTCAAATGAGCTTGGACGAGGTAGCTCAAAAGGGGCGAAGTTCTCAATTGTGGTTATAGTGTTCACATCATTTGCCATCGGTGTTGTGTTGTTCTTCATTTTCCTATTCTTGAGGGAACGTCTATCCTACATCTTTACCAACGACGAAGAGGTAGCCAAAGCAGTTGCCGACTTGTCACCATTATTGGCCTTCTCCATATTGTTGAACAGTGTTCAGCCTGTGCTCTCCGGTATTGTTGACGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

400

Amino Acids

44.11

Weight (kDa)

5.65

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	41 - 201	8.9e-29	MatE
MatE	PF01554	263 - 397	1.7e-22	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	130, 518
AciI	CCGC	2 cut(s)	452, 564
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	5 cut(s)	231, 333, 521, 815, 948
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	2 cut(s)	573, 1159
AjnI	CCWGG	1 cut(s)	631
Alw21I	GWGCWC	1 cut(s)	1179
Alw26I	GTCTC	1 cut(s)	893
AoxI	GGCC	2 cut(s)	417, 1140
ApeKI	GCWGC	3 cut(s)	206, 935, 938
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	3 cut(s)	277, 371, 638
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	121, 124, 493, 1122
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	18, 774
Bbv12I	GWGCWC	1 cut(s)	1179
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	3 cut(s)	193, 922, 950
BccI	CCATC	1 cut(s)	1037
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	2 cut(s)	270, 878
BfmI	CTRYAG	1 cut(s)	936
BfuAI	ACCTGC	2 cut(s)	130, 518
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	3 cut(s)	207, 936, 939
BlsI	GCNGC	3 cut(s)	208, 937, 940
Bme1390I	CCNGG	2 cut(s)	479, 633
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	479, 633
BmsI	GCATC	4 cut(s)	261, 402, 698, 862
BpiI	GAAGAC	2 cut(s)	18, 774
BpmI	CTGGAG	1 cut(s)	824
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	1084
BpuMI	CCSGG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	922
BsaWI	WCCGGW	1 cut(s)	1181
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	237, 844
Bse21I	CCTNAGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	4 cut(s)	252, 585, 713, 766
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	189, 849
BseNI	ACTGG	2 cut(s)	237, 844
BseXI	GCAGC	3 cut(s)	193, 922, 950
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	419, 1142
BshVI	ATCGAT	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	1179
BsiSI	CCGG	2 cut(s)	479, 1182
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	893
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	419, 1142
Bsp1286I	GDGCHC	1 cut(s)	1179
Bsp143I	GATC	3 cut(s)	344, 546, 751
BspACI	CCGC	2 cut(s)	452, 564
BspANI	GGCC	2 cut(s)	419, 1142
BspCNI	CTCAG	2 cut(s)	190, 850
BspDI	ATCGAT	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	2 cut(s)	130, 518
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	237, 844
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	3 cut(s)	344, 546, 751
BssT1I	CCWWGG	1 cut(s)	922
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	229, 610, 823, 1163
Bst6I	CTCTTC	1 cut(s)	1095
BstC8I	GCNNGC	2 cut(s)	454, 528
BstDEI	CTNAG	4 cut(s)	198, 412, 421, 858
BstF5I	GGATG	4 cut(s)	252, 585, 713, 766
BstHHI	GCGC	3 cut(s)	277, 371, 638
BstKTI	GATC	3 cut(s)	347, 549, 754
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	3 cut(s)	344, 546, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 449
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	477, 631
BstSFI	CTRYAG	1 cut(s)	936
BstV1I	GCAGC	3 cut(s)	193, 922, 950
BstV2I	GAAGAC	2 cut(s)	18, 774
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	870
Bsu36I	CCTNAGG	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	419, 1142
BsuTUI	ATCGAT	1 cut(s)	870
BtsCI	GGATG	4 cut(s)	252, 585, 713, 766
BtsIMutI	CAGTG	1 cut(s)	1168
BveI	ACCTGC	2 cut(s)	130, 518
Cac8I	GCNNGC	2 cut(s)	454, 528
CfoI	GCGC	3 cut(s)	277, 371, 638
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	230, 332, 520, 814, 947
CviAII	CATG	4 cut(s)	322, 348, 597, 720
CviQI	GTAC	5 cut(s)	230, 332, 520, 814, 947
DdeI	CTNAG	4 cut(s)	198, 412, 421, 858
DpnI	GATC	3 cut(s)	346, 548, 753
DpnII	GATC	3 cut(s)	344, 546, 751
DraI	TTTAAA	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
Eco130I	CCWWGG	1 cut(s)	922
Eco147I	AGGCCT	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	325, 351, 600, 723
FatI	CATG	4 cut(s)	321, 347, 596, 719
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	207, 936, 939
FokI	GGATG	4 cut(s)	239, 572, 720, 773
Fsp4HI	GCNGC	3 cut(s)	207, 936, 939
FspBI	CTAG	2 cut(s)	270, 878
GlaI	GCGC	3 cut(s)	276, 370, 637
GluI	GCNGC	3 cut(s)	207, 936, 939
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	419, 1142
HapII	CCGG	2 cut(s)	479, 1182
HhaI	GCGC	3 cut(s)	277, 371, 638
Hin1II	CATG	4 cut(s)	325, 351, 600, 723
Hin6I	GCGC	3 cut(s)	275, 369, 636
HinP1I	GCGC	3 cut(s)	275, 369, 636
HincII	GTYRAC	2 cut(s)	683, 1192
HindII	GTYRAC	2 cut(s)	683, 1192
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	3 cut(s)	138, 628, 667
HpaII	CCGG	2 cut(s)	479, 1182
HphI	GGTGA	4 cut(s)	121, 124, 493, 1122
Hpy166II	GTNNAC	6 cut(s)	56, 648, 683, 947, 1017, 1192
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	3 cut(s)	733, 803, 1063
Hpy8I	GTNNAC	6 cut(s)	56, 648, 683, 947, 1017, 1192
Hpy99I	CGWCG	1 cut(s)	1100
HpyAV	CCTTC	2 cut(s)	184, 1153
HpyCH4III	ACNGT	4 cut(s)	229, 610, 823, 1163
HpyCH4IV	ACGT	3 cut(s)	52, 1072, 1194
HpyCH4V	TGCA	8 cut(s)	73, 209, 308, 393, 443, 526, 578, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 449
HpyF3I	CTNAG	4 cut(s)	198, 412, 421, 858
HpySE526I	ACGT	3 cut(s)	52, 1072, 1194
Hsp92II	CATG	4 cut(s)	325, 351, 600, 723
HspAI	GCGC	3 cut(s)	275, 369, 636
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	344, 546, 751
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	193, 922, 950
LweI	GCATC	4 cut(s)	261, 402, 698, 862
MaeI	CTAG	2 cut(s)	270, 878
MaeII	ACGT	3 cut(s)	52, 1072, 1194
MaeIII	GTNAC	2 cut(s)	182, 1128
MalI	GATC	3 cut(s)	346, 548, 753
MboI	GATC	3 cut(s)	344, 546, 751
MboII	GAAGA	8 cut(s)	23, 56, 112, 329, 367, 774, 1039, 1112
MfeI	CAATTG	2 cut(s)	573, 999
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	1179
MluCI	AATT	4 cut(s)	567, 573, 651, 999
MnlI	CCTC	8 cut(s)	15, 409, 599, 698, 853, 965, 1059, 1096
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	2 cut(s)	747, 836
MslI	CAYNNNNRTG	1 cut(s)	718
MspI	CCGG	2 cut(s)	479, 1182
MspR9I	CCNGG	2 cut(s)	479, 633
MunI	CAATTG	2 cut(s)	573, 999
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	122, 449
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	344, 546, 751
NlaIII	CATG	4 cut(s)	325, 351, 600, 723
NmuCI	GTSAC	2 cut(s)	182, 1128
NspI	RCATGY	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	3 cut(s)	138, 628, 667
PkrI	GCNGC	3 cut(s)	208, 937, 940
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	5 cut(s)	231, 333, 521, 815, 948
RsaNI	GTAC	5 cut(s)	230, 332, 520, 814, 947
RseI	CAYNNNNRTG	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	747, 836
SatI	GCNGC	3 cut(s)	207, 936, 939
Sau3AI	GATC	3 cut(s)	344, 546, 751
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	479, 633
SduI	GDGCHC	1 cut(s)	1179
SfaNI	GCATC	4 cut(s)	261, 402, 698, 862
SfcI	CTRYAG	1 cut(s)	936
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
Sse9I	AATT	4 cut(s)	567, 573, 651, 999
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	452, 564
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	270, 878
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	477, 631
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	4 cut(s)	229, 610, 823, 1163
TaiI	ACGT	3 cut(s)	55, 1075, 1197
TaqI	TCGA	2 cut(s)	734, 870
TasI	AATT	4 cut(s)	567, 573, 651, 999
TatI	WGTACW	2 cut(s)	229, 519
TfiI	GAWTC	3 cut(s)	138, 628, 667
Tru1I	TTAA	2 cut(s)	747, 836
Tru9I	TTAA	2 cut(s)	747, 836
TscAI	CASTG	1 cut(s)	1168
TseFI	GTSAC	2 cut(s)	182, 1128
TseI	GCWGC	3 cut(s)	206, 935, 938
Tsp45I	GTSAC	2 cut(s)	182, 1128
TspDTI	ATGAA	5 cut(s)	63, 105, 166, 585, 1039
TspRI	CASTG	1 cut(s)	1168
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	2 cut(s)	270, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.