Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003806

Physical Location & Seq

Genomic Coordinates Reverse (-)

18418680 .. 18430967

Gene Structure 12288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAAGAAGGCATCAAAAAGAATCTTTTGATAAAAGAGACAAGCAGTGCCGAAAAACGTGAAGATGAAGATTTGGGTGTCAAGTACAAGATATGGAATGAATCCATGAAGATGTGGGTGGTGGCTGGACCTGCTATATTCACCAGATTTTCTACTTTTGGAACAAGTGTCATCAGTCTAGCCTTTATTGGCCACATCGGCTCTACTGAATTAGCTGCATTTTCTCTTGTATTCACAGTATTCGTCAGGTTCAACAATGGAATCTTGCTGGGCATGGCTAGTGCGCTGGAAACTCTTTGTGGTCAATCATATGGTGCAAAACAATACCACATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTATTGTCTGTGAGCGCATTGTTCCTTGTTCCTATTTGTTTCTTTGTAACCCCAATTCTGGAGGCTTTAGGCCAAGAACAGAGCATTGCACAAGTCGCAGGATATATTTCTCTCTGGACAATCCCTGTGATTTTCGCATTTTTTGTATCCTTTACGTGCCAAATGTTTTTGCAATCCCAGAGCAAAAATATGATCATTGTTTACTTGTCAGCATTTGCTCTTGCAGTCCATATCCTCCTTTCATGGCTTTTAACTGTGAGATTTAAATTTGGGATACCTGGTGCAATGCTGTCAACAATTGTAGCATTTTGGATACCCAATTTTGGTCAGCTTTTATTTATTACATGTGGAGGATGTCCAGAAAAGTGGAAAGGTTTCTCCACCTTAGCTTTCAAAGAACTCTGGGATATTATCAAACTTTCCCTGTCTTCTGGTGTTATGCTTTGTCTCAAGCTTTGGTACAAGCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

278

Amino Acids

31.19

Weight (kDa)

8.84

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	44 - 204	2.4e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33080 AT1G33080 AT1G33090 AT1G33100 AT1G33110 AT1G33110
malus_domestica	MD12G1014300.v1.1 MD12G1014700.v1.1 MD14G1012300.v1.1
prunus_persica	Prupe.7G026300_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1 Prupe.7G026400_v2.0.a1
pyrus_communis	pycom12g01200
rosa_chinensis	RchiOBHm_Chr3g0495631
rosa_laevigata	RLG00000022605
rosa_multiflora	Rmu_sc0000559.1_g000033 Rmu_sc0003546.1_g000038
rosa_roxburghii	Rroxscaffold_5G00347190 Rroxscaffold_6G00390240 Rroxscaffold_6G00390260
rosa_rugosa	Rorug03G0274600 Rorug03G0274700 Rorug03G0274800 Rorug03G0274900
rosa_samantha	Rh3AG322300 Rh3BG357400 Rh3CG354200 Rh3DG357400
rosa_wichuraiana	Rw3G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	2 cut(s)	86, 824
AfiI	CCNNNNNNNGG	2 cut(s)	421, 686
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	3 cut(s)	253, 350, 757
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	4 cut(s)	215, 694, 752, 817
AluI	AGCT	4 cut(s)	215, 694, 752, 817
Alw26I	GTCTC	2 cut(s)	32, 815
AoxI	GGCC	2 cut(s)	190, 433
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	286, 380
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	642
BciVI	GTATCC	3 cut(s)	520, 630, 669
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	32, 815
BfaI	CTAG	3 cut(s)	179, 279, 835
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	3 cut(s)	520, 630, 669
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 686
Bse3DI	GCAATG	2 cut(s)	447, 654
BseBI	CCWGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	722
BseLI	CCNNNNNNNGG	2 cut(s)	421, 686
BseMI	GCAATG	2 cut(s)	447, 654
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	192, 435
BslI	CCNNNNNNNGG	2 cut(s)	421, 686
BsmAI	GTCTC	2 cut(s)	32, 815
BsnI	GGCC	2 cut(s)	192, 435
Bsp143I	GATC	2 cut(s)	353, 555
BspANI	GGCC	2 cut(s)	192, 435
BspMI	ACCTGC	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	447, 654
BssMI	GATC	2 cut(s)	353, 555
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	2 cut(s)	238, 619
BstBAI	YACGTR	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	748
BstF5I	GGATG	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	286, 380
BstKTI	GATC	2 cut(s)	356, 558
BstMAI	GTCTC	2 cut(s)	32, 815
BstMBI	GATC	2 cut(s)	353, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 198, 458
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	2 cut(s)	334, 711
BstSCI	CCNGG	1 cut(s)	640
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	783
BstXI	CCANNNNNNTGG	2 cut(s)	335, 729
BsuI	GTATCC	3 cut(s)	520, 630, 669
BsuRI	GGCC	2 cut(s)	192, 435
BtsCI	GGATG	1 cut(s)	722
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	2 cut(s)	286, 380
Cfr13I	GGNCC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	85, 823
CviAII	CATG	6 cut(s)	106, 274, 331, 357, 606, 708
CviQI	GTAC	2 cut(s)	85, 823
DdeI	CTNAG	1 cut(s)	748
DpnI	GATC	2 cut(s)	355, 557
DpnII	GATC	2 cut(s)	353, 555
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	640
FaeI	CATG	6 cut(s)	109, 277, 334, 360, 609, 711
FatI	CATG	6 cut(s)	105, 273, 330, 356, 605, 707
FauNDI	CATATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	729
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	179, 279, 835
GlaI	GCGC	2 cut(s)	285, 379
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	192, 435
HhaI	GCGC	2 cut(s)	286, 380
Hin1II	CATG	6 cut(s)	109, 277, 334, 360, 609, 711
Hin6I	GCGC	2 cut(s)	284, 378
HinP1I	GCGC	2 cut(s)	284, 378
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	3 cut(s)	22, 101, 261
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	565, 657
Hpy188III	TCNNGA	3 cut(s)	422, 478, 722
Hpy8I	GTNNAC	2 cut(s)	565, 657
HpyCH4III	ACNGT	2 cut(s)	238, 619
HpyCH4IV	ACGT	2 cut(s)	58, 518
HpyCH4V	TGCA	6 cut(s)	218, 317, 452, 535, 587, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 198, 458
HpyF3I	CTNAG	1 cut(s)	748
HpySE526I	ACGT	2 cut(s)	58, 518
Hsp92II	CATG	6 cut(s)	109, 277, 334, 360, 609, 711
HspAI	GCGC	2 cut(s)	284, 378
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	2 cut(s)	353, 555
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	3 cut(s)	179, 279, 835
MaeII	ACGT	2 cut(s)	58, 518
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	355, 557
MboI	GATC	2 cut(s)	353, 555
MboII	GAAGA	6 cut(s)	17, 74, 80, 121, 338, 783
MfeI	CAATTG	1 cut(s)	660
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	5 cut(s)	209, 417, 629, 660, 682
MluNI	TGGCCA	1 cut(s)	192
MnlI	CCTC	3 cut(s)	418, 608, 707
Mox20I	TGGCCA	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	2 cut(s)	614, 627
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	131, 198, 458
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	353, 555
NlaIII	CATG	6 cut(s)	109, 277, 334, 360, 609, 711
NspI	RCATGY	2 cut(s)	334, 711
PciI	ACATGT	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	3 cut(s)	22, 101, 261
PkrI	GCNGC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	519
PscI	ACATGT	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	640
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	86, 824
RsaNI	GTAC	2 cut(s)	85, 823
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	614, 627
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	353, 555
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	642
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	5 cut(s)	209, 417, 629, 660, 682
SspMI	CTAG	3 cut(s)	179, 279, 835
StyD4I	CCNGG	1 cut(s)	640
SwaI	ATTTAAAT	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	238, 619
TaiI	ACGT	2 cut(s)	61, 521
TasI	AATT	5 cut(s)	209, 417, 629, 660, 682
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	22, 101, 261
Tru1I	TTAA	2 cut(s)	614, 627
Tru9I	TTAA	2 cut(s)	614, 627
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	81, 114, 122, 594
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	2 cut(s)	334, 711
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	3 cut(s)	179, 279, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.