Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

12748571 .. 12750506

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGAAGGAGATCTTGTTGTTGCTATTGGTCATCATGTTTTTAACCGTTGCCGACGTCGACGCCGTTAGGGTTCCGTTTTGTGCTACGAAATCTGCTAAAGATTCAATCTTTGGGCTTCGAGATCAGACTTGTTCTGTTTCTGGTGTTGAATCAGACGAGCGTCCTCGTTTTGTTGCTGTCACCGAGGGTGATGAGCGTTGGTTGCAAATAGCATTGGATATGATTCATAAGAACAAGTGTGATTATGTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTTAGACCGAGTTTCGATGTTATCTCTTCTCTCTATTCCTCCATTCCTCATTTTGCCATTAAGGAATCATCCATTAAGCCTAGCACCCTTTCCAAGTATGGAGTTCATGGGTTTCCCACTCTCTTACTTTTGAATTCGACAATGCGGGCACGATACCGAGGAACCCGAATGCTTGATTCTCTTGTTGCTTTCTACAGTGATGTTACCGGCATTGAGACATTGGATAAAACTTCTCTCGAGAGAAGCGTATCAGTTCCTCATCTCGGTAACGAAAACAACACAGAGCCAGAAAACTGTCCATTCACGTGGGCAAGATCGCCTGAGAATATGCTTCGACAAGAGACCTATCTAGCTCTTGCCATTGTATTCGTCCTGTTGAGATTGCTTCACTTGATATATCCTACACTCGTCGTGTTTATGAAGTTCACTTGGAGACGGATTGCTCAGAACATGAGACTAGAAAGCCTGCTAGAACATACCGTCGGGTTTCTAAGCCGAGCTGTACAATTATGCATGCATAGAAGAAGCAATCTGCAGGGAGGGGCTATGAACGCTAGAGCATGGGCCTCTAAGTCTTTGGCCACTGTCTCAATTGGGGATTCAAGCTCATCAAACAGAAGAAGTTCATCTTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

310

Amino Acids

35.01

Weight (kDa)

9.04

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	1 cut(s)	427
AcvI	CACGTG	1 cut(s)	600
AcyI	GRCGYC	2 cut(s)	57, 63
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	108, 152, 427, 897
AluBI	AGCT	3 cut(s)	647, 794, 900
AluI	AGCT	3 cut(s)	647, 794, 900
Alw26I	GTCTC	5 cut(s)	503, 629, 721, 742, 886
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	858, 873
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	2 cut(s)	175, 203
AvaI	CYCGRG	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	875
BbrPI	CACGTG	1 cut(s)	600
BceAI	ACGGC	1 cut(s)	50
BcoDI	GTCTC	5 cut(s)	503, 629, 721, 742, 886
BfaI	CTAG	5 cut(s)	375, 644, 752, 764, 849
BfmI	CTRYAG	2 cut(s)	487, 827
BglII	AGATCT	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	2 cut(s)	75, 457
BmsI	GCATC	1 cut(s)	278
BoxI	GACNNNNGTC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	57, 63
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	186, 451
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	186, 451
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	606, 752
BseSI	GKGCMC	1 cut(s)	445
BshFI	GGCC	2 cut(s)	860, 875
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	5 cut(s)	503, 629, 721, 742, 886
BsmBI	CGTCTC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	860, 875
Bso31I	GGTCTC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	12, 124, 608
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	860, 875
BspCNI	CTCAG	2 cut(s)	607, 751
BspLI	GGNNCC	2 cut(s)	75, 457
BspMAI	CTGCAG	1 cut(s)	831
BspTNI	GGTCTC	1 cut(s)	629
BsrFI	RCCGGY	1 cut(s)	500
BsrGI	TGTACA	1 cut(s)	796
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	186, 451
BssMI	GATC	3 cut(s)	12, 124, 608
BssNI	GRCGYC	2 cut(s)	57, 63
Bst4CI	ACNGT	5 cut(s)	49, 491, 590, 775, 880
Bst6I	CTCTTC	1 cut(s)	325
BstACI	GRCGYC	2 cut(s)	57, 63
BstAUI	TGTACA	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	3 cut(s)	441, 761, 809
BstDEI	CTNAG	5 cut(s)	615, 738, 785, 864, 927
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	15, 127, 611
BstMAI	GTCTC	5 cut(s)	503, 629, 721, 742, 886
BstMBI	GATC	3 cut(s)	12, 124, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 845
BstNSI	RCATGY	1 cut(s)	811
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	487, 827
BstSLI	GKGCMC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	860, 875
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	496, 876
Cac8I	GCNNGC	3 cut(s)	441, 761, 809
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	858
CseI	GACGC	2 cut(s)	71, 152
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	6 cut(s)	37, 273, 401, 745, 808, 855
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	5 cut(s)	615, 738, 785, 864, 927
DpnI	GATC	3 cut(s)	14, 126, 610
DpnII	GATC	3 cut(s)	12, 124, 608
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	427
EcoT22I	ATGCAT	3 cut(s)	271, 809, 813
Esp3I	CGTCTC	1 cut(s)	721
FaeI	CATG	6 cut(s)	40, 276, 404, 748, 811, 858
FalI	AAGNNNNNCTT	2 cut(s)	31, 907
FatI	CATG	6 cut(s)	36, 272, 400, 744, 807, 854
FauI	CCCGC	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	1 cut(s)	349
FspBI	CTAG	5 cut(s)	375, 644, 752, 764, 849
HaeIII	GGCC	2 cut(s)	860, 875
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	2 cut(s)	71, 152
Hin1I	GRCGYC	2 cut(s)	57, 63
Hin1II	CATG	6 cut(s)	40, 276, 404, 748, 811, 858
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	6 cut(s)	104, 152, 226, 359, 470, 893
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	175, 203
Hpy166II	GTNNAC	2 cut(s)	61, 720
Hpy188I	TCNGA	3 cut(s)	129, 157, 741
Hpy188III	TCNNGA	3 cut(s)	122, 530, 532
Hpy8I	GTNNAC	2 cut(s)	61, 720
Hpy99I	CGWCG	5 cut(s)	59, 62, 65, 707, 779
HpyCH4III	ACNGT	5 cut(s)	49, 491, 590, 775, 880
HpyCH4IV	ACGT	2 cut(s)	57, 599
HpyCH4V	TGCA	5 cut(s)	208, 269, 807, 811, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 845
HpyF3I	CTNAG	5 cut(s)	615, 738, 785, 864, 927
HpySE526I	ACGT	2 cut(s)	57, 599
Hsp92I	GRCGYC	2 cut(s)	57, 63
Hsp92II	CATG	6 cut(s)	40, 276, 404, 748, 811, 858
Kzo9I	GATC	3 cut(s)	12, 124, 608
LpnPI	CCDG	7 cut(s)	129, 514, 594, 627, 680, 773, 815
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	5 cut(s)	375, 644, 752, 764, 849
MaeII	ACGT	2 cut(s)	57, 599
MaeIII	GTNAC	3 cut(s)	181, 496, 560
MalI	GATC	3 cut(s)	14, 126, 610
MboI	GATC	3 cut(s)	12, 124, 608
MboII	GAAGA	4 cut(s)	312, 828, 915, 924
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	3 cut(s)	427, 800, 885
MluNI	TGGCCA	1 cut(s)	875
MnlI	CCTC	8 cut(s)	177, 181, 343, 351, 446, 561, 827, 871
Mox20I	TGGCCA	1 cut(s)	875
Mph1103I	ATGCAT	3 cut(s)	271, 809, 813
MroXI	GAANNNNTTC	1 cut(s)	916
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	3 cut(s)	44, 354, 369
MslI	CAYNNNNRTG	2 cut(s)	274, 598
Msp20I	TGGCCA	1 cut(s)	875
MspI	CCGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	205, 845
NdeII	GATC	3 cut(s)	12, 124, 608
NlaIII	CATG	6 cut(s)	40, 276, 404, 748, 811, 858
NlaIV	GGNNCC	2 cut(s)	75, 457
NmeAIII	GCCGAG	1 cut(s)	815
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	3 cut(s)	271, 809, 813
NspI	RCATGY	1 cut(s)	811
PaeI	GCATGC	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 537
PctI	GAATGC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	916
PfeI	GAWTC	6 cut(s)	104, 152, 226, 359, 470, 893
PmaCI	CACGTG	1 cut(s)	600
PmlI	CACGTG	1 cut(s)	600
Ppu21I	YACGTR	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	75, 457
PspPI	GGNCC	1 cut(s)	858
PstI	CTGCAG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	274, 598
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	44, 354, 369
Sau3AI	GATC	3 cut(s)	12, 124, 608
Sau96I	GGNCC	1 cut(s)	858
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	7 cut(s)	60, 293, 602, 641, 649, 796, 902
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	2 cut(s)	487, 827
Sfr274I	CTCGAG	1 cut(s)	530
SgrDI	CGTCGACG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	274, 598
SmlI	CTYRAG	2 cut(s)	286, 530
SmoI	CTYRAG	2 cut(s)	286, 530
SphI	GCATGC	1 cut(s)	811
Sse9I	AATT	3 cut(s)	427, 800, 885
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	5 cut(s)	375, 644, 752, 764, 849
TaaI	ACNGT	5 cut(s)	49, 491, 590, 775, 880
TaiI	ACGT	2 cut(s)	60, 602
TaqI	TCGA	6 cut(s)	60, 121, 309, 431, 531, 628
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	3 cut(s)	427, 800, 885
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	6 cut(s)	104, 152, 226, 359, 470, 893
Tru1I	TTAA	3 cut(s)	44, 354, 369
Tru9I	TTAA	3 cut(s)	44, 354, 369
TscAI	CASTG	2 cut(s)	496, 883
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	218, 389, 728, 857, 909
TspGWI	ACGGA	2 cut(s)	66, 745
TspRI	CASTG	2 cut(s)	496, 883
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	916
XspI	CTAG	5 cut(s)	375, 644, 752, 764, 849
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	3 cut(s)	271, 809, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.