Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Forward (+)

61526288 .. 61528745

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGATTAGGGTTTGGGGATTTGGGATCCTGATATTATTGATATGGAGCCGCCTAACGTGCTCCGCCGAGCCGACGTCTTCTCCGACGGAGTCCGCGGCGGAAGCGATCTTTGGATTCCGAGATTCCTGTTGTCCGGCTGACGGCGTCACCAGATCCGTTGGGTCTAATGGTGTTATTGTGGGAGATGAGGTTTCGTTACAAAGGGCATTGAATCTGGTTCACAAGAATAGTCACGAGTATGTGGCTGTGCTCTTCTATGCATCTTGGTGCCCTTTCTCAAGGATGTTTAAGCCAACATTTTCTGTTCTGGCTTCTTTGTATCCTTCCATCCCACATTTTGCATTTGAAGAATCAGCCATCAGGCCAAGTATCCTCTCAAAGTATGGAGTTCATGGCTTTCCTACTCTTTTCATTTTGAATTCTACCATGCGAGTTCGATACCAGGGAGCCCGGACTCCTGGTTCTCTTATTGCTTTCTATAGTGAAGTTACTGGCATCAAGACAGTATCATTGGATCAATTGTCACTGGAAAAGGCCGGACACCCACCAAATCATGAGAAGAATGATAGCAATGAGCAGGAAAGCTGCCCCTTTTCATGGGCAAGATCTCCAGAGAATTTGCTTCGTCAGGAAACATATTTGGCTCTTGCCTCTGCTTTTGTAATTCTGCGTTTGCTCTACATCTTTTTTCCCACTCTGATTTCATTCGCTCAATCCGCATGGAGAAGACATATCCGAAACGTAAGATTCGGGAGCTTGTTTGAGCACCCTGTGGCCTATCTAAAGCGTGCAGTGCAGTTGTTTAACTCTCTAAAAGAGCCTTGCAAAAGGAGTAATCTGCAGGAAGGAGCAATGAACGCCCGGGTCTGGGCTTCCAAGTCGCTCGCCACTGTTTCCATTGGGGATGCAAGTACCAGCAGGGGTACTACAGTGACTGAAACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

316

Amino Acids

35.15

Weight (kDa)

9.28

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 160	6.6e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	1 cut(s)	98
AciI	CCGC	6 cut(s)	52, 66, 96, 98, 101, 720
AclWI	GGATC	4 cut(s)	22, 35, 150, 525
AcsI	RAATTY	2 cut(s)	421, 619
AcyI	GRCGYC	2 cut(s)	77, 147
AdeI	CACNNNGTG	1 cut(s)	775
AfaI	GTAC	2 cut(s)	916, 928
AfiI	CCNNNNNNNGG	4 cut(s)	143, 600, 870, 871
AgsI	TTSAA	3 cut(s)	214, 350, 421
AjnI	CCWGG	2 cut(s)	444, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	2 cut(s)	588, 759
AluI	AGCT	2 cut(s)	588, 759
Alw21I	GWGCWC	3 cut(s)	65, 255, 771
AlwI	GGATC	4 cut(s)	22, 35, 150, 525
AlwNI	CAGNNNCTG	1 cut(s)	938
Ama87I	CYCGRG	1 cut(s)	864
AoxI	GGCC	3 cut(s)	365, 537, 777
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	421, 619
AsuC2I	CCSGG	3 cut(s)	454, 865, 866
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BamHI	GGATCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	72, 736
Bbv12I	GWGCWC	3 cut(s)	65, 255, 771
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	2 cut(s)	338, 368
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	446, 462
BciVI	GTATCC	2 cut(s)	333, 383
BcnI	CCSGG	3 cut(s)	454, 865, 866
BfmI	CTRYAG	3 cut(s)	481, 842, 930
BfuI	GTATCC	2 cut(s)	333, 383
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	3 cut(s)	52, 99, 589
BlsI	GCNGC	3 cut(s)	53, 100, 590
Bme1390I	CCNGG	5 cut(s)	446, 454, 462, 865, 866
BmeT110I	CYCGRG	1 cut(s)	864
BmiI	GGNNCC	4 cut(s)	29, 50, 272, 451
BmrFI	CCNGG	5 cut(s)	446, 454, 462, 865, 866
BmsI	GCATC	3 cut(s)	272, 507, 898
BpiI	GAAGAC	2 cut(s)	72, 736
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	3 cut(s)	454, 865, 866
BsaHI	GRCGYC	2 cut(s)	77, 147
BsaJI	CCNNGG	3 cut(s)	96, 445, 864
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 177, 207
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 600, 870, 871
Bse1I	ACTGG	2 cut(s)	499, 534
Bse3DI	GCAATG	2 cut(s)	580, 861
BseBI	CCWGG	2 cut(s)	446, 462
BseDI	CCNNGG	3 cut(s)	96, 445, 864
BseGI	GGATG	3 cut(s)	291, 330, 913
BseLI	CCNNNNNNNGG	4 cut(s)	143, 600, 870, 871
BseMI	GCAATG	2 cut(s)	580, 861
BseNI	ACTGG	2 cut(s)	499, 534
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	575
BsgI	GTGCAG	2 cut(s)	813, 818
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	367, 539, 779
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	65, 255, 771
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	4 cut(s)	137, 454, 540, 865
BslI	CCNNNNNNNGG	4 cut(s)	143, 600, 870, 871
BsnI	GGCC	3 cut(s)	367, 539, 779
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	5 cut(s)	65, 255, 275, 454, 771
Bsp143I	GATC	5 cut(s)	27, 108, 155, 517, 608
BspACI	CCGC	6 cut(s)	52, 66, 96, 98, 101, 720
BspANI	GGCC	3 cut(s)	367, 539, 779
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	29, 50, 272, 451
BspMAI	CTGCAG	1 cut(s)	846
BspPI	GGATC	4 cut(s)	22, 35, 150, 525
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	580, 861
BsrI	ACTGG	2 cut(s)	499, 534
BssECI	CCNNGG	3 cut(s)	96, 445, 864
BssMI	GATC	5 cut(s)	27, 108, 155, 517, 608
BssNI	GRCGYC	2 cut(s)	77, 147
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	446, 462
Bst4CI	ACNGT	3 cut(s)	508, 895, 934
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	77, 147
BstC8I	GCNNGC	2 cut(s)	792, 888
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	291, 330, 913
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	5 cut(s)	30, 111, 158, 520, 611
BstMBI	GATC	5 cut(s)	27, 108, 155, 517, 608
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 104, 719, 796, 860
BstNI	CCWGG	2 cut(s)	446, 462
BstSCI	CCNGG	5 cut(s)	444, 452, 460, 863, 864
BstSFI	CTRYAG	3 cut(s)	481, 842, 930
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	72, 736
BstX2I	RGATCY	3 cut(s)	27, 155, 608
BstYI	RGATCY	3 cut(s)	27, 155, 608
BsuI	GTATCC	2 cut(s)	333, 383
BsuRI	GGCC	3 cut(s)	367, 539, 779
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	291, 330, 913
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	4 cut(s)	527, 801, 891, 939
Cac8I	GCNNGC	2 cut(s)	792, 888
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	556
Cfr42I	CCGCGG	1 cut(s)	99
Cfr9I	CCCGGG	1 cut(s)	864
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	915, 927
CviAII	CATG	5 cut(s)	395, 430, 557, 600, 723
CviQI	GTAC	2 cut(s)	915, 927
DpnI	GATC	5 cut(s)	29, 110, 157, 519, 610
DpnII	GATC	5 cut(s)	27, 108, 155, 517, 608
DraIII	CACNNNGTG	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	55, 116
Eco24I	GRGCYC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	444, 460
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	5 cut(s)	398, 433, 560, 603, 726
FatI	CATG	5 cut(s)	394, 429, 556, 599, 722
Fnu4HI	GCNGC	3 cut(s)	52, 99, 589
FokI	GGATG	3 cut(s)	298, 317, 920
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	52, 99, 589
GluI	GCNGC	3 cut(s)	52, 99, 589
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	367, 539, 779
HapII	CCGG	4 cut(s)	137, 454, 540, 865
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	77, 147
Hin1II	CATG	5 cut(s)	398, 433, 560, 603, 726
HinfI	GANTC	7 cut(s)	92, 117, 125, 214, 353, 457, 750
HpaII	CCGG	4 cut(s)	137, 454, 540, 865
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	87, 122, 702, 740
Hpy188III	TCNNGA	7 cut(s)	31, 236, 502, 557, 614, 632, 754
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	79, 91
HpyAV	CCTTC	2 cut(s)	336, 842
HpyCH4III	ACNGT	3 cut(s)	508, 895, 934
HpyCH4IV	ACGT	3 cut(s)	59, 77, 744
HpyCH4V	TGCA	7 cut(s)	263, 344, 794, 799, 828, 844, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 104, 719, 796, 860
HpySE526I	ACGT	3 cut(s)	59, 77, 744
Hsp92I	GRCGYC	2 cut(s)	77, 147
Hsp92II	CATG	5 cut(s)	398, 433, 560, 603, 726
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	27, 108, 155, 517, 608
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	5 cut(s)	48, 68, 449, 756, 851
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	3 cut(s)	272, 507, 898
MaeII	ACGT	3 cut(s)	59, 77, 744
MaeIII	GTNAC	6 cut(s)	148, 198, 233, 490, 525, 934
MalI	GATC	5 cut(s)	29, 110, 157, 519, 610
MboI	GATC	5 cut(s)	27, 108, 155, 517, 608
MboII	GAAGA	5 cut(s)	72, 247, 362, 574, 741
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	3 cut(s)	27, 155, 608
MhlI	GDGCHC	5 cut(s)	65, 255, 275, 454, 771
MluCI	AATT	4 cut(s)	421, 521, 619, 666
MlyI	GAGTC	2 cut(s)	101, 451
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	184, 386, 664
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	2 cut(s)	291, 807
MslI	CAYNNNNRTG	2 cut(s)	240, 268
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	4 cut(s)	137, 454, 540, 865
MspR9I	CCNGG	5 cut(s)	446, 454, 462, 865, 866
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	446, 462
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	60, 104, 719, 796, 860
NciI	CCSGG	3 cut(s)	454, 865, 866
NdeII	GATC	5 cut(s)	27, 108, 155, 517, 608
NlaIII	CATG	5 cut(s)	398, 433, 560, 603, 726
NlaIV	GGNNCC	4 cut(s)	29, 50, 272, 451
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	4 cut(s)	148, 233, 525, 934
NsiI	ATGCAT	1 cut(s)	265
PagI	TCATGA	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	117, 125, 214, 353, 750
PflFI	GACNNNGTC	2 cut(s)	91, 146
PkrI	GCNGC	3 cut(s)	53, 100, 590
PleI	GAGTC	2 cut(s)	100, 451
PpsI	GAGTC	2 cut(s)	100, 451
Psp6I	CCWGG	2 cut(s)	444, 460
PspGI	CCWGG	2 cut(s)	444, 460
PspN4I	GGNNCC	4 cut(s)	29, 50, 272, 451
PstI	CTGCAG	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	27, 155, 608
PsyI	GACNNNGTC	2 cut(s)	91, 146
RsaI	GTAC	2 cut(s)	916, 928
RsaNI	GTAC	2 cut(s)	915, 927
RseI	CAYNNNNRTG	2 cut(s)	240, 268
SacII	CCGCGG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	291, 807
SatI	GCNGC	3 cut(s)	52, 99, 589
Sau3AI	GATC	5 cut(s)	27, 108, 155, 517, 608
SchI	GAGTC	2 cut(s)	101, 451
ScrFI	CCNGG	5 cut(s)	446, 454, 462, 865, 866
SduI	GDGCHC	5 cut(s)	65, 255, 275, 454, 771
SetI	ASST	6 cut(s)	62, 80, 195, 590, 747, 761
SfaNI	GCATC	3 cut(s)	272, 507, 898
SfcI	CTRYAG	3 cut(s)	481, 842, 930
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SmaI	CCCGGG	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	240, 268
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	4 cut(s)	421, 521, 619, 666
SsiI	CCGC	6 cut(s)	52, 66, 96, 98, 101, 720
StyD4I	CCNGG	5 cut(s)	444, 452, 460, 863, 864
TaaI	ACNGT	3 cut(s)	508, 895, 934
TaiI	ACGT	3 cut(s)	62, 80, 747
TaqI	TCGA	1 cut(s)	439
TasI	AATT	4 cut(s)	421, 521, 619, 666
TauI	GCSGC	2 cut(s)	54, 101
TfiI	GAWTC	5 cut(s)	117, 125, 214, 353, 750
Tru1I	TTAA	2 cut(s)	291, 807
Tru9I	TTAA	2 cut(s)	291, 807
TscAI	CASTG	4 cut(s)	534, 801, 898, 939
TseFI	GTSAC	4 cut(s)	148, 233, 525, 934
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	4 cut(s)	148, 233, 525, 934
TspDTI	ATGAA	5 cut(s)	383, 403, 588, 696, 872
TspGWI	ACGGA	2 cut(s)	104, 148
TspMI	CCCGGG	1 cut(s)	864
TspRI	CASTG	4 cut(s)	534, 801, 898, 939
Tth111I	GACNNNGTC	2 cut(s)	91, 146
XapI	RAATTY	2 cut(s)	421, 619
XmaI	CCCGGG	1 cut(s)	864
ZraI	GACGTC	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.