Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006110.1

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

18544 .. 20144

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006110.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgtttaagccaacattttctgttctggcttctttgtatccttccatcccacattttgcatttgaagaatcagccatcaggccaagtatcctctcaaagtatggagttcatggctttcctactcttttcattttgaattctaccatgcgagttcgataccagggagcccggactcctggttctcttattgctttctatagtgaagttactggcatcaagacagtatcattggatcaattgtcactggaaaaggccggacacccaccaaatcatgagaagaatgatagcaatgagcaggaaagctgccccttttcatgggcaagatctccagagaatttgcttcgtcaggaaacatatttggctcttgcctctgcttttgtaattctgcgtttgctctacgtcttttttcctactctgatttcattcgctcaatccgcatggagaagacatatccgaaacgtaagattcgggagcttgtttgagcaccctgtggcctatctaaagcgtgcagtgcagttgtttaactctctaaaagagccttgcaaaaggagtaatctgcaggaaggagcaatgaacgcccgggtctgggcttccaagtcgctcgccacagtttccattggggatgcaagtaccagcaggggtactacagtgactgaaacccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

221

Amino Acids

24.84

Weight (kDa)

9.8

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	136, 334
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	2 cut(s)	631, 643
AfiI	CCNNNNNNNGG	3 cut(s)	315, 585, 586
AgsI	TTSAA	2 cut(s)	65, 136
AjnI	CCWGG	2 cut(s)	159, 175
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	2 cut(s)	303, 474
AluI	AGCT	2 cut(s)	303, 474
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	579
AoxI	GGCC	3 cut(s)	80, 252, 492
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	2 cut(s)	136, 334
AsuC2I	CCSGG	3 cut(s)	169, 580, 581
AvaI	CYCGRG	1 cut(s)	579
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BanII	GRGCYC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	53, 83
BciT130I	CCWGG	2 cut(s)	161, 177
BciVI	GTATCC	2 cut(s)	48, 98
BcnI	CCSGG	3 cut(s)	169, 580, 581
BfmI	CTRYAG	3 cut(s)	196, 557, 645
BfuI	GTATCC	2 cut(s)	48, 98
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	5 cut(s)	161, 169, 177, 580, 581
BmeT110I	CYCGRG	1 cut(s)	579
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	5 cut(s)	161, 169, 177, 580, 581
BmsI	GCATC	2 cut(s)	222, 613
BpiI	GAAGAC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	312
BpuMI	CCSGG	3 cut(s)	169, 580, 581
BsaJI	CCNNGG	2 cut(s)	160, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 585, 586
Bse1I	ACTGG	2 cut(s)	214, 249
Bse3DI	GCAATG	2 cut(s)	295, 576
BseBI	CCWGG	2 cut(s)	161, 177
BseDI	CCNNGG	2 cut(s)	160, 579
BseGI	GGATG	2 cut(s)	45, 628
BseLI	CCNNNNNNNGG	3 cut(s)	315, 585, 586
BseMI	GCAATG	2 cut(s)	295, 576
BseNI	ACTGG	2 cut(s)	214, 249
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	528, 533
BshFI	GGCC	3 cut(s)	82, 254, 494
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	3 cut(s)	169, 255, 580
BslI	CCNNNNNNNGG	3 cut(s)	315, 585, 586
BsnI	GGCC	3 cut(s)	82, 254, 494
BsoBI	CYCGRG	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	169, 486
Bsp143I	GATC	2 cut(s)	232, 323
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	82, 254, 494
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	295, 576
BsrI	ACTGG	2 cut(s)	214, 249
BssECI	CCNNGG	2 cut(s)	160, 579
BssMI	GATC	2 cut(s)	232, 323
Bst2UI	CCWGG	2 cut(s)	161, 177
Bst4CI	ACNGT	3 cut(s)	223, 610, 649
BstC8I	GCNNGC	2 cut(s)	507, 603
BstF5I	GGATG	2 cut(s)	45, 628
BstKTI	GATC	2 cut(s)	235, 326
BstMBI	GATC	2 cut(s)	232, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 511, 575
BstNI	CCWGG	2 cut(s)	161, 177
BstSCI	CCNGG	5 cut(s)	159, 167, 175, 578, 579
BstSFI	CTRYAG	3 cut(s)	196, 557, 645
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuI	GTATCC	2 cut(s)	48, 98
BsuRI	GGCC	3 cut(s)	82, 254, 494
BtsCI	GGATG	2 cut(s)	45, 628
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	3 cut(s)	242, 516, 654
Cac8I	GCNNGC	2 cut(s)	507, 603
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	271
Cfr9I	CCCGGG	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	630, 642
CviAII	CATG	5 cut(s)	110, 145, 272, 315, 438
CviQI	GTAC	2 cut(s)	630, 642
DpnI	GATC	2 cut(s)	234, 325
DpnII	GATC	2 cut(s)	232, 323
DraIII	CACNNNGTG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	579
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	159, 175
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	5 cut(s)	113, 148, 275, 318, 441
FaiI	YATR	9 cut(s)	102, 111, 146, 198, 273, 316, 355, 439, 450
FatI	CATG	5 cut(s)	109, 144, 271, 314, 437
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	32, 635
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	82, 254, 494
HapII	CCGG	3 cut(s)	169, 255, 580
Hin1II	CATG	5 cut(s)	113, 148, 275, 318, 441
HinfI	GANTC	3 cut(s)	68, 172, 465
HpaII	CCGG	3 cut(s)	169, 255, 580
Hpy188I	TCNGA	2 cut(s)	417, 455
Hpy188III	TCNNGA	5 cut(s)	217, 272, 329, 347, 469
HpyAV	CCTTC	2 cut(s)	51, 557
HpyCH4III	ACNGT	3 cut(s)	223, 610, 649
HpyCH4IV	ACGT	2 cut(s)	399, 459
HpyCH4V	TGCA	6 cut(s)	59, 509, 514, 543, 559, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 511, 575
HpySE526I	ACGT	2 cut(s)	399, 459
Hsp92II	CATG	5 cut(s)	113, 148, 275, 318, 441
Kzo9I	GATC	2 cut(s)	232, 323
LmnI	GCTCC	3 cut(s)	164, 471, 566
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	222, 613
MaeII	ACGT	2 cut(s)	399, 459
MaeIII	GTNAC	3 cut(s)	205, 240, 649
MalI	GATC	2 cut(s)	234, 325
MboI	GATC	2 cut(s)	232, 323
MboII	GAAGA	3 cut(s)	77, 289, 456
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	169, 486
MluCI	AATT	4 cut(s)	136, 236, 334, 381
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	101, 379
MseI	TTAA	2 cut(s)	6, 522
MspI	CCGG	3 cut(s)	169, 255, 580
MspR9I	CCNGG	5 cut(s)	161, 169, 177, 580, 581
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	161, 177
MwoI	GCNNNNNNNGC	3 cut(s)	434, 511, 575
NciI	CCSGG	3 cut(s)	169, 580, 581
NdeII	GATC	2 cut(s)	232, 323
NlaIII	CATG	5 cut(s)	113, 148, 275, 318, 441
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	240, 649
PagI	TCATGA	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	68, 465
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	159, 175
PspGI	CCWGG	2 cut(s)	159, 175
PspN4I	GGNNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	561
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	2 cut(s)	631, 643
RsaNI	GTAC	2 cut(s)	630, 642
SaqAI	TTAA	2 cut(s)	6, 522
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	232, 323
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	5 cut(s)	161, 169, 177, 580, 581
SduI	GDGCHC	2 cut(s)	169, 486
SetI	ASST	4 cut(s)	305, 402, 462, 476
SfaNI	GCATC	2 cut(s)	222, 613
SfcI	CTRYAG	3 cut(s)	196, 557, 645
SmaI	CCCGGG	1 cut(s)	581
Sse9I	AATT	4 cut(s)	136, 236, 334, 381
SsiI	CCGC	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	159, 167, 175, 578, 579
TaaI	ACNGT	3 cut(s)	223, 610, 649
TaiI	ACGT	2 cut(s)	402, 462
TaqI	TCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	136, 236, 334, 381
TfiI	GAWTC	2 cut(s)	68, 465
Tru1I	TTAA	2 cut(s)	6, 522
Tru9I	TTAA	2 cut(s)	6, 522
TscAI	CASTG	3 cut(s)	249, 516, 654
TseFI	GTSAC	2 cut(s)	240, 649
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	2 cut(s)	240, 649
TspDTI	ATGAA	5 cut(s)	98, 118, 303, 411, 587
TspMI	CCCGGG	1 cut(s)	579
TspRI	CASTG	3 cut(s)	249, 516, 654
XapI	RAATTY	2 cut(s)	136, 334
XmaI	CCCGGG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.