Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8170786.1

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 514

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8170786.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaatgtaggcatcaagacagtatcattggatcaattgtcactggaaaaggccggacacccaccaaatcatgagaagaatgatagcaatgagcaggaaagctgccccttttcatgggcaagatctccagagaatttgcttcgtcaggaaacatatttggctcttgcctctgcttttgtaattctgcgtttgctctacgtcttttttcctactctgatttcattcgctcaatccgcatggagaagacatatccgaaacgtaagattcgggagcttgtttgagcaccctgtggcctatctaaagcgtgcagtgcagttgtttaactctctaaaagagccttgcaaaaggagtaatctgcaggaaggagcaatgaacgcccgggtctgggcttccaagtcgctcgccacagtttccattggggatgcaagtaccagcaggggtactacagtgactgaaacccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

154

Amino Acids

17.35

Weight (kDa)

9.69

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	430, 442
AfiI	CCNNNNNNNGG	3 cut(s)	114, 384, 385
AluBI	AGCT	2 cut(s)	102, 273
AluI	AGCT	2 cut(s)	102, 273
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	2 cut(s)	51, 291
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	379, 380
AvaI	CYCGRG	1 cut(s)	378
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	89
BcnI	CCSGG	2 cut(s)	379, 380
BfmI	CTRYAG	2 cut(s)	356, 444
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	379, 380
BmeT110I	CYCGRG	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	379, 380
BmsI	GCATC	2 cut(s)	21, 412
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	2 cut(s)	379, 380
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 384, 385
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	94, 375
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	3 cut(s)	114, 384, 385
BseMI	GCAATG	2 cut(s)	94, 375
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	89
BsgI	GTGCAG	2 cut(s)	327, 332
BshFI	GGCC	2 cut(s)	53, 293
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	54, 379
BslI	CCNNNNNNNGG	3 cut(s)	114, 384, 385
BsnI	GGCC	2 cut(s)	53, 293
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	31, 122
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	53, 293
BspHI	TCATGA	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	94, 375
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	31, 122
Bst4CI	ACNGT	3 cut(s)	22, 409, 448
BstC8I	GCNNGC	2 cut(s)	306, 402
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	2 cut(s)	34, 125
BstMBI	GATC	2 cut(s)	31, 122
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 310, 374
BstSCI	CCNGG	2 cut(s)	377, 378
BstSFI	CTRYAG	2 cut(s)	356, 444
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	53, 293
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	41, 315, 453
Cac8I	GCNNGC	2 cut(s)	306, 402
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	70
Cfr9I	CCCGGG	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	429, 441
CviAII	CATG	3 cut(s)	71, 114, 237
CviJI	RGCY	7 cut(s)	53, 102, 161, 273, 293, 337, 389
CviKI_1	RGCY	7 cut(s)	53, 102, 161, 273, 293, 337, 389
CviQI	GTAC	2 cut(s)	429, 441
DpnI	GATC	2 cut(s)	33, 124
DpnII	GATC	2 cut(s)	31, 122
DraIII	CACNNNGTG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	378
FaeI	CATG	3 cut(s)	74, 117, 240
FaiI	YATR	5 cut(s)	72, 115, 154, 238, 249
FatI	CATG	3 cut(s)	70, 113, 236
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	53, 293
HapII	CCGG	2 cut(s)	54, 379
Hin1II	CATG	3 cut(s)	74, 117, 240
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	54, 379
Hpy188I	TCNGA	2 cut(s)	216, 254
Hpy188III	TCNNGA	5 cut(s)	16, 71, 128, 146, 268
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	3 cut(s)	22, 409, 448
HpyCH4IV	ACGT	2 cut(s)	198, 258
HpyCH4V	TGCA	5 cut(s)	308, 313, 342, 358, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 310, 374
HpySE526I	ACGT	2 cut(s)	198, 258
Hsp92II	CATG	3 cut(s)	74, 117, 240
Kzo9I	GATC	2 cut(s)	31, 122
LmnI	GCTCC	2 cut(s)	270, 365
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	2 cut(s)	21, 412
MaeII	ACGT	2 cut(s)	198, 258
MaeIII	GTNAC	2 cut(s)	39, 448
MalI	GATC	2 cut(s)	33, 124
MboI	GATC	2 cut(s)	31, 122
MboII	GAAGA	2 cut(s)	88, 255
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	35, 133, 180
MnlI	CCTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	321
MspI	CCGG	2 cut(s)	54, 379
MspR9I	CCNGG	2 cut(s)	379, 380
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	233, 310, 374
NciI	CCSGG	2 cut(s)	379, 380
NdeII	GATC	2 cut(s)	31, 122
NlaIII	CATG	3 cut(s)	74, 117, 240
NmuCI	GTSAC	2 cut(s)	39, 448
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	430, 442
RsaNI	GTAC	2 cut(s)	429, 441
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	2 cut(s)	31, 122
ScrFI	CCNGG	2 cut(s)	379, 380
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	104, 201, 261, 275
SfaNI	GCATC	2 cut(s)	21, 412
SfcI	CTRYAG	2 cut(s)	356, 444
SmaI	CCCGGG	1 cut(s)	380
Sse9I	AATT	3 cut(s)	35, 133, 180
SsiI	CCGC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	377, 378
TaaI	ACNGT	3 cut(s)	22, 409, 448
TaiI	ACGT	2 cut(s)	201, 261
TasI	AATT	3 cut(s)	35, 133, 180
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	48, 315, 453
TseFI	GTSAC	2 cut(s)	39, 448
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	2 cut(s)	39, 448
TspDTI	ATGAA	4 cut(s)	17, 102, 210, 386
TspMI	CCCGGG	1 cut(s)	378
TspRI	CASTG	3 cut(s)	48, 315, 453
XapI	RAATTY	1 cut(s)	133
XmaI	CCCGGG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.