Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397189.1

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1185

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397189.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

atggggattagggtttggggatttgggatcctgatattattgatatggggccgcctaacgtgcgccgccgagccgacgtcttctccgacggagtccgcggcggaagcgatctttggattccgatattcctattgtccggctgacggcgtcaccagatccgttggttctaatggtgttgttgtgggagatgaggtttcgttacaaagggcattgaatctggttcacaagaatagtcacgagtatgtggctgtgctcttctatgcatcttggtgccctttctcaaggatgtttaagccaacattttctgttctggcttctttgtatccttccatcccacattttgcatttgaagaatcagccatcaggccaagtatcctctcaaagtatggagttcatggctttcctactcttttcattttgaattctaccatgcgagttcgataccagggagcccggactcctggttctcttattgctttctatagtgaagttactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

165

Amino Acids

18.2

Weight (kDa)

8.86

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	1 cut(s)	98
AciI	CCGC	5 cut(s)	52, 66, 96, 98, 101
AclWI	GGATC	3 cut(s)	22, 35, 150
AcsI	RAATTY	1 cut(s)	421
AcyI	GRCGYC	2 cut(s)	77, 147
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	214, 350, 421
AjnI	CCWGG	2 cut(s)	444, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	22, 35, 150
AoxI	GGCC	2 cut(s)	49, 365
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	2 cut(s)	338, 368
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	446, 462
BciVI	GTATCC	2 cut(s)	333, 383
BcnI	CCSGG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	481
BfuI	GTATCC	2 cut(s)	333, 383
BisI	GCNGC	3 cut(s)	52, 66, 99
BlsI	GCNGC	3 cut(s)	53, 67, 100
Bme1390I	CCNGG	3 cut(s)	446, 454, 462
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	29, 50, 272, 451
BmrFI	CCNGG	3 cut(s)	446, 454, 462
BmsI	GCATC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	454
BsaHI	GRCGYC	2 cut(s)	77, 147
BsaJI	CCNNGG	2 cut(s)	96, 445
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	446, 462
BseDI	CCNNGG	2 cut(s)	96, 445
BseGI	GGATG	2 cut(s)	291, 330
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	51, 367
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	137, 454
BslI	CCNNNNNNNGG	1 cut(s)	143
BsnI	GGCC	2 cut(s)	51, 367
Bsp1286I	GDGCHC	3 cut(s)	255, 275, 454
Bsp143I	GATC	3 cut(s)	27, 108, 155
BspACI	CCGC	5 cut(s)	52, 66, 96, 98, 101
BspANI	GGCC	2 cut(s)	51, 367
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	29, 50, 272, 451
BspPI	GGATC	3 cut(s)	22, 35, 150
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	96, 445
BssMI	GATC	3 cut(s)	27, 108, 155
BssNI	GRCGYC	2 cut(s)	77, 147
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	446, 462
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	77, 147
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	291, 330
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	30, 111, 158
BstMBI	GATC	3 cut(s)	27, 108, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 104
BstNI	CCWGG	2 cut(s)	446, 462
BstSCI	CCNGG	3 cut(s)	444, 452, 460
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	27, 155
BstYI	RGATCY	2 cut(s)	27, 155
BsuI	GTATCC	2 cut(s)	333, 383
BsuRI	GGCC	2 cut(s)	51, 367
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	291, 330
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	136
CviAII	CATG	2 cut(s)	395, 430
DpnI	GATC	3 cut(s)	29, 110, 157
DpnII	GATC	3 cut(s)	27, 108, 155
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	444, 460
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	398, 433
FaiI	YATR	7 cut(s)	46, 243, 261, 387, 396, 431, 483
FatI	CATG	2 cut(s)	394, 429
Fnu4HI	GCNGC	3 cut(s)	52, 66, 99
FokI	GGATG	2 cut(s)	298, 317
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	52, 66, 99
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	52, 66, 99
HaeIII	GGCC	2 cut(s)	51, 367
HapII	CCGG	2 cut(s)	137, 454
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	2 cut(s)	77, 147
Hin1II	CATG	2 cut(s)	398, 433
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	5 cut(s)	92, 117, 214, 353, 457
HpaII	CCGG	2 cut(s)	137, 454
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	87, 122
Hpy188III	TCNNGA	2 cut(s)	31, 236
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	79, 91
HpyAV	CCTTC	1 cut(s)	336
HpyCH4IV	ACGT	2 cut(s)	59, 77
HpyCH4V	TGCA	2 cut(s)	263, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 104
HpySE526I	ACGT	2 cut(s)	59, 77
Hsp92I	GRCGYC	2 cut(s)	77, 147
Hsp92II	CATG	2 cut(s)	398, 433
HspAI	GCGC	1 cut(s)	63
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	27, 108, 155
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	449
LweI	GCATC	1 cut(s)	272
MaeII	ACGT	2 cut(s)	59, 77
MaeIII	GTNAC	4 cut(s)	148, 198, 233, 490
MalI	GATC	3 cut(s)	29, 110, 157
MboI	GATC	3 cut(s)	27, 108, 155
MboII	GAAGA	3 cut(s)	72, 247, 362
MflI	RGATCY	2 cut(s)	27, 155
MhlI	GDGCHC	3 cut(s)	255, 275, 454
MluCI	AATT	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	101, 451
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	184, 386
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	240, 268
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	137, 454
MspR9I	CCNGG	3 cut(s)	446, 454, 462
MvaI	CCWGG	2 cut(s)	446, 462
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	60, 104
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	27, 108, 155
NlaIII	CATG	2 cut(s)	398, 433
NlaIV	GGNNCC	4 cut(s)	29, 50, 272, 451
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	148, 233
NsiI	ATGCAT	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	117, 214, 353
PflFI	GACNNNGTC	2 cut(s)	91, 146
PkrI	GCNGC	3 cut(s)	53, 67, 100
PleI	GAGTC	2 cut(s)	100, 451
PpsI	GAGTC	2 cut(s)	100, 451
Psp6I	CCWGG	2 cut(s)	444, 460
PspGI	CCWGG	2 cut(s)	444, 460
PspN4I	GGNNCC	4 cut(s)	29, 50, 272, 451
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	27, 155
PsyI	GACNNNGTC	2 cut(s)	91, 146
RseI	CAYNNNNRTG	2 cut(s)	240, 268
SacII	CCGCGG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	52, 66, 99
Sau3AI	GATC	3 cut(s)	27, 108, 155
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	101, 451
ScrFI	CCNGG	3 cut(s)	446, 454, 462
SduI	GDGCHC	3 cut(s)	255, 275, 454
SetI	ASST	3 cut(s)	62, 80, 195
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	481
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	240, 268
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	5 cut(s)	52, 66, 96, 98, 101
StyD4I	CCNGG	3 cut(s)	444, 452, 460
TaiI	ACGT	2 cut(s)	62, 80
TaqI	TCGA	1 cut(s)	439
TasI	AATT	1 cut(s)	421
TauI	GCSGC	3 cut(s)	54, 68, 101
TfiI	GAWTC	3 cut(s)	117, 214, 353
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	148, 233
Tsp45I	GTSAC	2 cut(s)	148, 233
TspDTI	ATGAA	2 cut(s)	383, 403
TspGWI	ACGGA	2 cut(s)	104, 148
Tth111I	GACNNNGTC	2 cut(s)	91, 146
XapI	RAATTY	1 cut(s)	421
ZraI	GACGTC	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.