Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

45053913 .. 45056421

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1370700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATTAGGGTTTGGGAAAGTGGGATCGTGATATTGGTTTTATGGGTCCGGCTAATTTCCGCCGCCGAACCCACCTCTTGCCCCGCGGAGTCCGCTGCCGATGCGATCTTCGGCTTCCGGTATTCCAATTGCCCCGTCAACGGCGCTTCCAGATCCGTTGAATCCATGGGTGTTATCGTGGGGGATGAGGTTTCTTTACAAAGGGCATTAAATATTGTTCACAAGAATACTCATGATTATGTGGCGGTGCTCTTCTATGCATCATGGTGCCCTTTCTCAAGGATGTTTAAACCAACGTTTTCCATCCTGGCTTCTTTGTATCCTTCGATCCCCCATTTTGCATTTGAAGAATCAGCCATCAGGCCAAGTATACTCTCTAAATATGGAGTTCATGGATTTCCTACTCTTTTCATTTTGAATTCTACCACGCGCATTCGATATCAAGGCGCGCGCACTCCTGGTTCTCTTATTGCTTTCTATAGTGATGTTACTGGCATCAAGACTGTATCACTGGATCAATTGTCACTGGAAAAAATTGGATACCCACTAAATCATGAGAAGCATGATAGCACTGAGCAGGAAAGCTGCCCGTTTTCGTGGGCTAGATCTCCTGAGAATTTGCTTCGGCAAGAAACATATTTAGCTCTGGCTTCTGCTTTTGTGCTTCTGAGATTGCTCTACTCCTTTTATCCTGCTCTGCTTTCGTTTGCTCAATCTGCATGGAGACGGCATATTCAAAACATGAGACTGGGAAGCTTGTTGGAGCACCCTTTGGCTTTTCTAAAGCGGGCAGTACAGTTGTTTAATTCTCTAAAAGAGCCTTGCAAGAGGAGTAATTTGCAGGAAGGAGCAATGAACGCCAGAGTGTGGGCTTCCAAGTCACTTGCCACAGTTTCTATCGGGGATGCAAGCACCAGCAGGGGTTATAGCAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

314

Amino Acids

34.87

Weight (kDa)

9.07

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 160	1.1e-09	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	373
AccII	CGCG	4 cut(s)	89, 433, 452, 454
AciI	CCGC	7 cut(s)	63, 66, 87, 89, 96, 248, 790
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	4 cut(s)	35, 150, 325, 525
AcsI	RAATTY	2 cut(s)	421, 619
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	2 cut(s)	143, 870
AgsI	TTSAA	4 cut(s)	164, 350, 421, 740
AjnI	CCWGG	2 cut(s)	309, 460
AluBI	AGCT	3 cut(s)	588, 647, 759
AluI	AGCT	3 cut(s)	588, 647, 759
Alw21I	GWGCWC	2 cut(s)	255, 771
Alw26I	GTCTC	2 cut(s)	721, 742
AlwI	GGATC	4 cut(s)	35, 150, 325, 525
AlwNI	CAGNNNCTG	1 cut(s)	939
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	98, 588
ApoI	RAATTY	2 cut(s)	421, 619
AspLEI	GCGC	5 cut(s)	149, 435, 452, 454, 456
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	255, 771
BbvI	GCAGC	2 cut(s)	85, 575
BccI	CCATC	2 cut(s)	314, 368
BceAI	ACGGC	2 cut(s)	160, 746
BciT130I	CCWGG	2 cut(s)	311, 462
BciVI	GTATCC	2 cut(s)	333, 536
BcoDI	GTCTC	2 cut(s)	721, 742
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	333, 536
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	3 cut(s)	66, 99, 589
BlsI	GCNGC	3 cut(s)	67, 100, 590
Bme1390I	CCNGG	2 cut(s)	311, 462
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	50, 272
BmrFI	CCNGG	2 cut(s)	311, 462
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	4 cut(s)	94, 272, 507, 898
BmuI	ACTGGG	1 cut(s)	761
BpuEI	CTTGAG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	87, 168
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 870
Bse1I	ACTGG	4 cut(s)	499, 519, 534, 756
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	2 cut(s)	311, 462
BseDI	CCNNGG	2 cut(s)	87, 168
BseGI	GGATG	4 cut(s)	193, 291, 306, 913
BseLI	CCNNNNNNNGG	2 cut(s)	143, 870
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	3 cut(s)	567, 606, 662
BseNI	ACTGG	4 cut(s)	499, 519, 534, 756
BsePI	GCGCGC	2 cut(s)	450, 452
BseRI	GAGGAG	1 cut(s)	847
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	85, 575
Bsh1236I	CGCG	4 cut(s)	89, 433, 452, 454
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	255, 771
BsiSI	CCGG	2 cut(s)	52, 121
BslI	CCNNNNNNNGG	2 cut(s)	143, 870
BsmAI	GTCTC	2 cut(s)	721, 742
BsmBI	CGTCTC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	3 cut(s)	255, 275, 771
Bsp143I	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	7 cut(s)	63, 66, 87, 89, 96, 248, 790
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	3 cut(s)	568, 607, 663
BspFNI	CGCG	4 cut(s)	89, 433, 452, 454
BspHI	TCATGA	2 cut(s)	235, 556
BspLI	GGNNCC	2 cut(s)	50, 272
BspPI	GGATC	4 cut(s)	35, 150, 325, 525
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	4 cut(s)	499, 519, 534, 756
BssECI	CCNNGG	2 cut(s)	87, 168
BssHII	GCGCGC	2 cut(s)	450, 452
BssMI	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
BssNAI	GTATAC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	311, 462
Bst4CI	ACNGT	3 cut(s)	508, 801, 895
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	452, 454, 792, 913
BstDEI	CTNAG	3 cut(s)	576, 615, 671
BstDSI	CCRYGG	2 cut(s)	87, 168
BstF5I	GGATG	4 cut(s)	193, 291, 306, 913
BstFNI	CGCG	4 cut(s)	89, 433, 452, 454
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	5 cut(s)	149, 435, 452, 454, 456
BstKTI	GATC	6 cut(s)	30, 111, 158, 333, 520, 611
BstMAI	GTCTC	2 cut(s)	721, 742
BstMBI	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 719, 860
BstNI	CCWGG	2 cut(s)	311, 462
BstSCI	CCNGG	2 cut(s)	309, 460
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	4 cut(s)	89, 433, 452, 454
BstV1I	GCAGC	2 cut(s)	85, 575
BstX2I	RGATCY	2 cut(s)	155, 608
BstYI	RGATCY	2 cut(s)	155, 608
BstZ17I	GTATAC	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	333, 536
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	87, 168
BtsCI	GGATG	4 cut(s)	193, 291, 306, 913
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	4 cut(s)	512, 527, 573, 940
Cac8I	GCNNGC	4 cut(s)	452, 454, 792, 913
CaiI	CAGNNNCTG	1 cut(s)	939
CciI	TCATGA	2 cut(s)	235, 556
CfoI	GCGC	5 cut(s)	149, 435, 452, 454, 456
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	8 cut(s)	169, 236, 267, 395, 557, 566, 723, 745
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	3 cut(s)	576, 615, 671
DpnI	GATC	6 cut(s)	29, 110, 157, 332, 519, 610
DpnII	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	309, 460
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	721
FaeI	CATG	8 cut(s)	172, 239, 270, 398, 560, 569, 726, 748
FatI	CATG	8 cut(s)	168, 235, 266, 394, 556, 565, 722, 744
FauI	CCCGC	2 cut(s)	94, 783
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	66, 99, 589
FokI	GGATG	4 cut(s)	200, 293, 298, 920
Fsp4HI	GCNGC	3 cut(s)	66, 99, 589
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	5 cut(s)	148, 434, 451, 453, 455
GluI	GCNGC	3 cut(s)	66, 99, 589
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	52, 121
HhaI	GCGC	5 cut(s)	149, 435, 452, 454, 456
Hin1II	CATG	8 cut(s)	172, 239, 270, 398, 560, 569, 726, 748
Hin6I	GCGC	5 cut(s)	147, 433, 450, 452, 454
HinP1I	GCGC	5 cut(s)	147, 433, 450, 452, 454
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	3 cut(s)	92, 164, 353
HpaII	CCGG	2 cut(s)	52, 121
Hpy166II	GTNNAC	3 cut(s)	142, 223, 374
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	6 cut(s)	31, 153, 236, 502, 557, 614
Hpy8I	GTNNAC	3 cut(s)	142, 223, 374
HpyAV	CCTTC	2 cut(s)	336, 842
HpyCH4III	ACNGT	3 cut(s)	508, 801, 895
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	6 cut(s)	263, 344, 722, 828, 844, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 719, 860
HpyF3I	CTNAG	3 cut(s)	576, 615, 671
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	8 cut(s)	172, 239, 270, 398, 560, 569, 726, 748
HspAI	GCGC	5 cut(s)	147, 433, 450, 452, 454
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	766, 851
Lsp1109I	GCAGC	2 cut(s)	85, 575
LweI	GCATC	4 cut(s)	94, 272, 507, 898
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	4 cut(s)	490, 525, 882, 935
MalI	GATC	6 cut(s)	29, 110, 157, 332, 519, 610
MboI	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
MboII	GAAGA	3 cut(s)	103, 247, 362
MfeI	CAATTG	2 cut(s)	130, 521
MflI	RGATCY	2 cut(s)	155, 608
MhlI	GDGCHC	3 cut(s)	255, 275, 771
MluCI	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	3 cut(s)	88, 184, 825
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	3 cut(s)	212, 291, 807
MslI	CAYNNNNRTG	2 cut(s)	240, 268
MspA1I	CMGCKG	2 cut(s)	89, 98
MspI	CCGG	2 cut(s)	52, 121
MspR9I	CCNGG	2 cut(s)	311, 462
MssI	GTTTAAAC	1 cut(s)	292
MunI	CAATTG	2 cut(s)	130, 521
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	311, 462
MvnI	CGCG	4 cut(s)	89, 433, 452, 454
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 719, 860
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
NlaIII	CATG	8 cut(s)	172, 239, 270, 398, 560, 569, 726, 748
NlaIV	GGNNCC	2 cut(s)	50, 272
NmuCI	GTSAC	3 cut(s)	525, 882, 935
NsiI	ATGCAT	1 cut(s)	265
PagI	TCATGA	2 cut(s)	235, 556
PauI	GCGCGC	2 cut(s)	450, 452
PciSI	GCTCTTC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	164, 353
PflMI	CCANNNNNTGG	1 cut(s)	870
PkrI	GCNGC	3 cut(s)	67, 100, 590
PleI	GAGTC	1 cut(s)	100
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	309, 460
PspGI	CCWGG	2 cut(s)	309, 460
PspN4I	GGNNCC	2 cut(s)	50, 272
PspPI	GGNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	939
PsuI	RGATCY	2 cut(s)	155, 608
PteI	GCGCGC	2 cut(s)	450, 452
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	240, 268
SacII	CCGCGG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	212, 291, 807
SatI	GCNGC	3 cut(s)	66, 99, 589
Sau3AI	GATC	6 cut(s)	27, 108, 155, 330, 517, 608
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	311, 462
SduI	GDGCHC	3 cut(s)	255, 275, 771
SetI	ASST	6 cut(s)	80, 195, 302, 590, 649, 761
SfaNI	GCATC	4 cut(s)	94, 272, 507, 898
SfcI	CTRYAG	1 cut(s)	481
Sfr303I	CCGCGG	1 cut(s)	90
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	240, 268
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
SsiI	CCGC	7 cut(s)	63, 66, 87, 89, 96, 248, 790
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	309, 460
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	508, 801, 895
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	329, 439
TasI	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	164, 353
Tru1I	TTAA	3 cut(s)	212, 291, 807
Tru9I	TTAA	3 cut(s)	212, 291, 807
TscAI	CASTG	4 cut(s)	519, 534, 580, 940
TseFI	GTSAC	3 cut(s)	525, 882, 935
TseI	GCWGC	2 cut(s)	98, 588
Tsp45I	GTSAC	3 cut(s)	525, 882, 935
TspDTI	ATGAA	3 cut(s)	383, 403, 872
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	4 cut(s)	519, 534, 580, 940
Van91I	CCANNNNNTGG	1 cut(s)	870
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	421, 619
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.