Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Forward (+)

70273529 .. 70275366

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGATTAGGGTTTGGGGATTTGGGATCCTGATATTATTGATATGGGGCGGTGAGCCGACGTCTTCTCCGACGGAGTCCGCGGCGGAAGCGATCTTTGGATTCCGAGATTCCTATTGTCCGGCTGACGGCGTCACCAGATCGTTGGTTCTAATTATTGTGGGAGATGAGGTTTCGTTACAAAGGGCATTGAATCTGGTTCACAAGAATAGTCACGAGTATGTGGCTGTGCTCTTCTATGCATCTTGGTGCCCTTCTCAAGGATGTTTAAGCCAACATTTTCTGTTCTGGCTTCTTTGTATCCTTCCATCCCACATTTTGCATTTGAAGAATCAGCCATCAGGCCAAGGTTTTATCCTCTCAAAGTATGGAGTTCATGGCTTTCCTACTCTTTTCATTTTGAATTCTACCATGCGAGTTCGATACCAGGGAGCCCGGACTCCTGGTTCTCTTATTGCTTTCTATAGTGAAGTTACTGGCATCAAGACAGTATCATTGGATCAATTGTCACTGGAAAAGGCCGGACACCCACCAAATCATGAGAAGAATGATAGCAATGAGCAGGAAAGCTGCCCCTTTTCATGGGCAAGATCTCCAGAGAATTTGCTTCGTCAGGAAACATATTTGGCTCTTGCCTCTGCTTTTGTAATTCTGCGTTTGCTCTACATCTTTTTTCCCACTCTGATTTCATTCGCTCAATCCGCATGGAGAAGGCATGTCCGAAACGTAAGATTCGGGAGCTTGTTTGAGCACCCTGTGGCCTATCTAAAGCGTGCAGTGCAGTTGTTTAACTCTCTAAAAGAGCCTTGCAAAAGGAGTAATCTGCAGGAAGGAGCAATGAACGCCCGGGTCTGGGCTTCCAAGTCACTCGCCACAGTTTCCATCGGGGATGCAAGTACCAGCAGGGGTACTGCAGTGACTGAAACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

310

Amino Acids

34.58

Weight (kDa)

9.16

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	83
AciI	CCGC	5 cut(s)	51, 81, 83, 86, 702
AclWI	GGATC	3 cut(s)	22, 35, 507
AcsI	RAATTY	2 cut(s)	403, 601
AcyI	GRCGYC	2 cut(s)	62, 132
AdeI	CACNNNGTG	1 cut(s)	757
AfaI	GTAC	2 cut(s)	898, 910
AfiI	CCNNNNNNNGG	5 cut(s)	128, 260, 582, 852, 853
AgsI	TTSAA	3 cut(s)	193, 328, 403
AjnI	CCWGG	2 cut(s)	426, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AloI	GAACNNNNNNTCC	2 cut(s)	430, 462
AluBI	AGCT	2 cut(s)	570, 741
AluI	AGCT	2 cut(s)	570, 741
Alw21I	GWGCWC	2 cut(s)	234, 753
AlwI	GGATC	3 cut(s)	22, 35, 507
AlwNI	CAGNNNCTG	1 cut(s)	920
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	3 cut(s)	343, 519, 759
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	2 cut(s)	403, 601
AsuC2I	CCSGG	3 cut(s)	436, 847, 848
AsuHPI	GGTGA	2 cut(s)	65, 127
AvaI	CYCGRG	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	254
BaeI	ACNNNNGTAYC	2 cut(s)	900, 933
BamHI	GGATCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	234, 753
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	3 cut(s)	316, 346, 890
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	428, 444
BciVI	GTATCC	1 cut(s)	311
BcnI	CCSGG	3 cut(s)	436, 847, 848
BfmI	CTRYAG	3 cut(s)	463, 824, 912
BfuI	GTATCC	1 cut(s)	311
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	2 cut(s)	84, 571
BlsI	GCNGC	2 cut(s)	85, 572
Bme1390I	CCNGG	5 cut(s)	428, 436, 444, 847, 848
BmeT110I	CYCGRG	1 cut(s)	846
BmiI	GGNNCC	3 cut(s)	29, 251, 433
BmrFI	CCNGG	5 cut(s)	428, 436, 444, 847, 848
BmsI	GCATC	3 cut(s)	251, 489, 880
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	3 cut(s)	436, 847, 848
BsaHI	GRCGYC	2 cut(s)	62, 132
BsaJI	CCNNGG	4 cut(s)	81, 346, 427, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 156, 186
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 260, 582, 852, 853
Bse1I	ACTGG	2 cut(s)	481, 516
Bse3DI	GCAATG	2 cut(s)	562, 843
BseBI	CCWGG	2 cut(s)	428, 444
BseDI	CCNNGG	4 cut(s)	81, 346, 427, 846
BseGI	GGATG	3 cut(s)	269, 308, 895
BseLI	CCNNNNNNNGG	5 cut(s)	128, 260, 582, 852, 853
BseMI	GCAATG	2 cut(s)	562, 843
BseNI	ACTGG	2 cut(s)	481, 516
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	557
BsgI	GTGCAG	2 cut(s)	795, 800
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	345, 521, 761
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	234, 753
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	4 cut(s)	122, 436, 522, 847
BslI	CCNNNNNNNGG	5 cut(s)	128, 260, 582, 852, 853
BsnI	GGCC	3 cut(s)	345, 521, 761
BsoBI	CYCGRG	1 cut(s)	846
Bsp1286I	GDGCHC	4 cut(s)	234, 254, 436, 753
Bsp143I	GATC	5 cut(s)	27, 93, 140, 499, 590
BspACI	CCGC	5 cut(s)	51, 81, 83, 86, 702
BspANI	GGCC	3 cut(s)	345, 521, 761
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	29, 251, 433
BspMAI	CTGCAG	2 cut(s)	828, 916
BspPI	GGATC	3 cut(s)	22, 35, 507
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	249
BsrDI	GCAATG	2 cut(s)	562, 843
BsrI	ACTGG	2 cut(s)	481, 516
BssECI	CCNNGG	4 cut(s)	81, 346, 427, 846
BssMI	GATC	5 cut(s)	27, 93, 140, 499, 590
BssNI	GRCGYC	2 cut(s)	62, 132
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	428, 444
Bst4CI	ACNGT	2 cut(s)	490, 877
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	2 cut(s)	62, 132
BstC8I	GCNNGC	1 cut(s)	774
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	3 cut(s)	269, 308, 895
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	5 cut(s)	30, 96, 143, 502, 593
BstMBI	GATC	5 cut(s)	27, 93, 140, 499, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 701, 778, 842
BstNI	CCWGG	2 cut(s)	428, 444
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	426, 434, 442, 845, 846
BstSFI	CTRYAG	3 cut(s)	463, 824, 912
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	27, 590
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	27, 590
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	345, 521, 761
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	269, 308, 895
BtsI	GCAGTG	2 cut(s)	783, 921
BtsIMutI	CAGTG	3 cut(s)	509, 783, 921
Cac8I	GCNNGC	1 cut(s)	774
CaiI	CAGNNNCTG	1 cut(s)	920
CciI	TCATGA	1 cut(s)	538
Cfr42I	CCGCGG	1 cut(s)	84
Cfr9I	CCCGGG	1 cut(s)	846
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	897, 909
CviAII	CATG	6 cut(s)	377, 412, 539, 582, 705, 716
CviQI	GTAC	2 cut(s)	897, 909
DpnI	GATC	5 cut(s)	29, 95, 142, 501, 592
DpnII	GATC	5 cut(s)	27, 93, 140, 499, 590
DraIII	CACNNNGTG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	846
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	426, 442
EcoT14I	CCWWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	6 cut(s)	380, 415, 542, 585, 708, 719
FatI	CATG	6 cut(s)	376, 411, 538, 581, 704, 715
Fnu4HI	GCNGC	2 cut(s)	84, 571
FokI	GGATG	3 cut(s)	276, 295, 902
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	84, 571
GluI	GCNGC	2 cut(s)	84, 571
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	345, 521, 761
HapII	CCGG	4 cut(s)	122, 436, 522, 847
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	62, 132
Hin1II	CATG	6 cut(s)	380, 415, 542, 585, 708, 719
HinfI	GANTC	7 cut(s)	77, 102, 110, 193, 331, 439, 732
HpaII	CCGG	4 cut(s)	122, 436, 522, 847
HphI	GGTGA	2 cut(s)	65, 127
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	72, 107, 684, 722
Hpy188III	TCNNGA	7 cut(s)	31, 215, 484, 539, 596, 614, 736
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	64, 76
HpyAV	CCTTC	4 cut(s)	264, 314, 705, 824
HpyCH4III	ACNGT	2 cut(s)	490, 877
HpyCH4IV	ACGT	2 cut(s)	62, 726
HpyCH4V	TGCA	8 cut(s)	242, 322, 776, 781, 810, 826, 893, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 701, 778, 842
HpySE526I	ACGT	2 cut(s)	62, 726
Hsp92I	GRCGYC	2 cut(s)	62, 132
Hsp92II	CATG	6 cut(s)	380, 415, 542, 585, 708, 719
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	27, 93, 140, 499, 590
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	431, 738, 833
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	3 cut(s)	251, 489, 880
MaeII	ACGT	2 cut(s)	62, 726
MaeIII	GTNAC	7 cut(s)	133, 177, 212, 472, 507, 864, 916
MalI	GATC	5 cut(s)	29, 95, 142, 501, 592
MboI	GATC	5 cut(s)	27, 93, 140, 499, 590
MboII	GAAGA	4 cut(s)	57, 226, 340, 556
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	2 cut(s)	27, 590
MhlI	GDGCHC	4 cut(s)	234, 254, 436, 753
MluCI	AATT	5 cut(s)	153, 403, 503, 601, 648
MlyI	GAGTC	2 cut(s)	86, 433
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	163, 368, 646
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	2 cut(s)	269, 789
MslI	CAYNNNNRTG	2 cut(s)	219, 247
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	4 cut(s)	122, 436, 522, 847
MspR9I	CCNGG	5 cut(s)	428, 436, 444, 847, 848
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	428, 444
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	89, 701, 778, 842
NciI	CCSGG	3 cut(s)	436, 847, 848
NdeII	GATC	5 cut(s)	27, 93, 140, 499, 590
NlaIII	CATG	6 cut(s)	380, 415, 542, 585, 708, 719
NlaIV	GGNNCC	3 cut(s)	29, 251, 433
NmuCI	GTSAC	5 cut(s)	133, 212, 507, 864, 916
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	1 cut(s)	719
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	5 cut(s)	102, 110, 193, 331, 732
PflFI	GACNNNGTC	2 cut(s)	76, 131
PkrI	GCNGC	2 cut(s)	85, 572
PleI	GAGTC	2 cut(s)	85, 433
PpsI	GAGTC	2 cut(s)	85, 433
Psp6I	CCWGG	2 cut(s)	426, 442
PspGI	CCWGG	2 cut(s)	426, 442
PspN4I	GGNNCC	3 cut(s)	29, 251, 433
PstI	CTGCAG	2 cut(s)	828, 916
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	2 cut(s)	27, 590
PsyI	GACNNNGTC	2 cut(s)	76, 131
RsaI	GTAC	2 cut(s)	898, 910
RsaNI	GTAC	2 cut(s)	897, 909
RseI	CAYNNNNRTG	2 cut(s)	219, 247
SacII	CCGCGG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	269, 789
SatI	GCNGC	2 cut(s)	84, 571
Sau3AI	GATC	5 cut(s)	27, 93, 140, 499, 590
SchI	GAGTC	2 cut(s)	86, 433
ScrFI	CCNGG	5 cut(s)	428, 436, 444, 847, 848
SduI	GDGCHC	4 cut(s)	234, 254, 436, 753
SetI	ASST	6 cut(s)	65, 174, 352, 572, 729, 743
SfaNI	GCATC	3 cut(s)	251, 489, 880
SfcI	CTRYAG	3 cut(s)	463, 824, 912
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SmaI	CCCGGG	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	219, 247
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	5 cut(s)	153, 403, 503, 601, 648
SsiI	CCGC	5 cut(s)	51, 81, 83, 86, 702
StyD4I	CCNGG	5 cut(s)	426, 434, 442, 845, 846
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	490, 877
TaiI	ACGT	2 cut(s)	65, 729
TaqI	TCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	153, 403, 503, 601, 648
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	5 cut(s)	102, 110, 193, 331, 732
Tru1I	TTAA	2 cut(s)	269, 789
Tru9I	TTAA	2 cut(s)	269, 789
TscAI	CASTG	3 cut(s)	516, 783, 921
TseFI	GTSAC	5 cut(s)	133, 212, 507, 864, 916
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	5 cut(s)	133, 212, 507, 864, 916
TspDTI	ATGAA	5 cut(s)	365, 385, 570, 678, 854
TspGWI	ACGGA	1 cut(s)	89
TspMI	CCCGGG	1 cut(s)	846
TspRI	CASTG	3 cut(s)	516, 783, 921
Tth111I	GACNNNGTC	2 cut(s)	76, 131
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	403, 601
XceI	RCATGY	1 cut(s)	719
XmaI	CCCGGG	1 cut(s)	846
ZraI	GACGTC	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.