Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Forward (+)

33294439 .. 33295977

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0323000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCTCTAGGCAATCAGTTTCCAACACCACAGAGAGATTTAGTGACAAGCAGAGGAGATCGAGCTTCATTGACGACGCGGCCGAGGAGGAGGAGGAGGAGGACGACGACGACGACGATGAATACGACCCCTATCGTGGTGGCGGTGGTGGGAGTGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAAGGTTTCTACATCAGTGAGGTTAGACAAGGAGGTGAGAGAGTTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTTGCCTCATCCATCATTTCCAGCCCTGAATCTTTGAGATGGCCCACTGTGGGGAAGTACAAAGTTGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATCGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATGTTCCAGTCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGCGATATACCAGCAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

194

Amino Acids

21.17

Weight (kDa)

4.49

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTPase_1	PF03266	50 - 184	1.6e-35	NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
Acc36I	ACCTGC	2 cut(s)	409, 566
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	308
AccII	CGCG	2 cut(s)	80, 564
AciI	CCGC	5 cut(s)	80, 144, 306, 311, 562
AcoI	YGGCCR	3 cut(s)	81, 298, 559
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	3 cut(s)	304, 371, 580
AfiI	CCNNNNNNNGG	4 cut(s)	137, 362, 363, 557
AflII	CTTAAG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	194, 230
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	5 cut(s)	3, 81, 298, 353, 559
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	286, 319
BccI	CCATC	3 cut(s)	332, 345, 460
BceAI	ACGGC	2 cut(s)	285, 313
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	502
BfuAI	ACCTGC	2 cut(s)	409, 566
BisI	GCNGC	2 cut(s)	81, 562
BlsI	GCNGC	2 cut(s)	82, 563
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	84, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 362, 363, 557
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	84, 399
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	4 cut(s)	137, 362, 363, 557
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	6 cut(s)	70, 101, 104, 107, 110, 113
BseX3I	CGGCCG	2 cut(s)	81, 298
Bsh1236I	CGCG	2 cut(s)	80, 564
Bsh1285I	CGRYCG	2 cut(s)	84, 301
BshFI	GGCC	5 cut(s)	5, 83, 300, 355, 561
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	2 cut(s)	84, 301
BslI	CCNNNNNNNGG	4 cut(s)	137, 362, 363, 557
BsnI	GGCC	5 cut(s)	5, 83, 300, 355, 561
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	5 cut(s)	80, 144, 306, 311, 562
BspANI	GGCC	5 cut(s)	5, 83, 300, 355, 561
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	2 cut(s)	80, 564
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	2 cut(s)	409, 566
BspTI	CTTAAG	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	84, 399
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	536
BstAFI	CTTAAG	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	320
BstFNI	CGCG	2 cut(s)	80, 564
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMCI	CGRYCG	2 cut(s)	84, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	2 cut(s)	80, 564
BstZI	CGGCCG	2 cut(s)	81, 298
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	5 cut(s)	5, 83, 300, 355, 561
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	250, 357
BveI	ACCTGC	2 cut(s)	409, 566
Cac8I	GCNNGC	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	354
ClaI	ATCGAT	1 cut(s)	450
CseI	GACGC	3 cut(s)	86, 375, 525
Csp6I	GTAC	3 cut(s)	303, 370, 579
CviJI	RGCY	7 cut(s)	5, 66, 83, 300, 336, 355, 561
CviKI_1	RGCY	7 cut(s)	5, 66, 83, 300, 336, 355, 561
CviQI	GTAC	3 cut(s)	303, 370, 579
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
EaeI	YGGCCR	3 cut(s)	81, 298, 559
EagI	CGGCCG	2 cut(s)	81, 298
EclXI	CGGCCG	2 cut(s)	81, 298
Eco130I	CCWWGG	1 cut(s)	399
Eco52I	CGGCCG	2 cut(s)	81, 298
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaiI	YATR	2 cut(s)	569, 583
Fnu4HI	GCNGC	2 cut(s)	81, 562
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	81, 562
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	81, 562
HaeIII	GGCC	5 cut(s)	5, 83, 300, 355, 561
HgaI	GACGC	3 cut(s)	86, 375, 525
Hin1I	GRCGYC	1 cut(s)	536
HinfI	GANTC	4 cut(s)	226, 341, 395, 515
HphI	GGTGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	410
Hpy99I	CGWCG	6 cut(s)	80, 110, 113, 116, 119, 391
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	536
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	44, 286
MalI	GATC	1 cut(s)	61
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	440, 481
MluCI	AATT	2 cut(s)	413, 546
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	48
MseI	TTAA	2 cut(s)	221, 503
MspCI	CTTAAG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	80, 564
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	44, 286
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 111, 114, 123
PfeI	GAWTC	3 cut(s)	226, 341, 515
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	82, 563
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	304, 371, 580
RsaNI	GTAC	3 cut(s)	303, 370, 579
SaqAI	TTAA	2 cut(s)	221, 503
SatI	GCNGC	2 cut(s)	81, 562
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	8 cut(s)	68, 235, 252, 265, 285, 423, 441, 580
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	2 cut(s)	413, 546
SsiI	CCGC	5 cut(s)	80, 144, 306, 311, 562
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	62, 450
TasI	AATT	2 cut(s)	413, 546
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	83, 564
TfiI	GAWTC	3 cut(s)	226, 341, 515
Tru1I	TTAA	2 cut(s)	221, 503
Tru9I	TTAA	2 cut(s)	221, 503
TscAI	CASTG	2 cut(s)	250, 364
TseFI	GTSAC	2 cut(s)	44, 286
Tsp45I	GTSAC	2 cut(s)	44, 286
TspDTI	ATGAA	4 cut(s)	58, 135, 468, 471
TspRI	CASTG	2 cut(s)	250, 364
Van91I	CCANNNNNTGG	1 cut(s)	557
Vha464I	CTTAAG	1 cut(s)	502
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.