Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

32528105 .. 32530254

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATTAGGGTTTGGGAAAGTGGGATCGCGATATTGGTTTTATGGGTCCGGCTAATTTCCGCCGCTGAACCCACCTCTTGCCCCGCGGAGTCCGCAGCCGATGCGATCTTCGGCTTCCGGTATTCCAATTGCCCCGTCAACGGCGCTTCCAGATCCGTTGAATCCATGGGTGTTATCGTGGGGGATGAGGTTTCTTTACAAAGGGCATTAAATATGGTTCACAAGAATACTCATGATTATGTGGCGGTGCTCTTCTATGCATCATGGTGCCCTTTCTCAAGGATGTTTAAACCAACATTTTCCATCCTGGCTTCTTTGTATCCTTCGATCCCACATTTTGCATTTGAAGAATCAGCCATCAGGCCAAGTATACTCTCTAAATATGGAGTTCATGGATTTCCTACTCTTTTCATTTTGAATTCTACCACGCGCATTCGATATCAAGGCGCCCGCACTCCTGGTTCTCTTATTGCTTTCTATAGTCATGTTACTGGCATCAAGACTGTATCACTGGATCAATTGTCACTGGAAAAAATTGGATACCCACTAAATCATGAGAAGCATGATAGCACTGAGCAGGAAAGCTGCCCGTTTTCGTGGGATCGATCTCCAGAGAATTTGCTTCGGCAAGAAACATATTTAGCTCTGGCTTCTGCTTTTGTGCTTCTGAGATTGCTCTACTCCTTTTATCCTGCTCTGCTTTCGTTTGTTCAATCTGCATGGAGACAGCATATTCAAAACATGAGACTGGGAAGCTTGTTGGAGCACCCTTTGGCTTTTCTAAAGCGGGCAGTACAGTTGTTTAATTCTCTAAAAGAGCCTTGCAAGAGGAGTAATTTGCAGGAAGGAGCAATGAACGCCAGGGTGTGGGCTTCCAAGTCACTGGCCACAGTTTCTATCGGGGATGCAAGCACCAGCAGGGGTTATAGCAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

314

Amino Acids

34.93

Weight (kDa)

8.93

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	270, 449
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	373
AccII	CGCG	3 cut(s)	32, 89, 433
AciI	CCGC	8 cut(s)	63, 66, 87, 89, 96, 248, 454, 790
AclWI	GGATC	5 cut(s)	35, 150, 325, 525, 612
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	421, 619
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	2 cut(s)	143, 870
AgsI	TTSAA	5 cut(s)	164, 350, 421, 716, 740
AjnI	CCWGG	3 cut(s)	309, 460, 863
AluBI	AGCT	3 cut(s)	588, 647, 759
AluI	AGCT	3 cut(s)	588, 647, 759
Alw21I	GWGCWC	2 cut(s)	255, 771
Alw26I	GTCTC	2 cut(s)	721, 742
AlwI	GGATC	5 cut(s)	35, 150, 325, 525, 612
AlwNI	CAGNNNCTG	1 cut(s)	939
AoxI	GGCC	2 cut(s)	365, 888
ApeKI	GCWGC	2 cut(s)	98, 588
ApoI	RAATTY	2 cut(s)	421, 619
AspLEI	GCGC	3 cut(s)	149, 435, 452
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	2 cut(s)	270, 449
Bbv12I	GWGCWC	2 cut(s)	255, 771
BbvI	GCAGC	2 cut(s)	110, 575
BccI	CCATC	2 cut(s)	314, 368
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	311, 462, 865
BciVI	GTATCC	2 cut(s)	333, 536
BcoDI	GTCTC	2 cut(s)	721, 742
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	2 cut(s)	150, 453
BfuI	GTATCC	2 cut(s)	333, 536
BisI	GCNGC	3 cut(s)	66, 99, 589
BlsI	GCNGC	3 cut(s)	67, 100, 590
Bme1390I	CCNGG	3 cut(s)	311, 462, 865
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	50, 272, 451
BmrFI	CCNGG	3 cut(s)	311, 462, 865
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	4 cut(s)	94, 272, 507, 898
BmuI	ACTGGG	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	265
Bsa29I	ATCGAT	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	87, 168, 864
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 870
Bse1I	ACTGG	5 cut(s)	499, 519, 534, 756, 891
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	3 cut(s)	311, 462, 865
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	3 cut(s)	87, 168, 864
BseGI	GGATG	4 cut(s)	193, 291, 306, 913
BseLI	CCNNNNNNNGG	2 cut(s)	143, 870
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	567, 662
BseNI	ACTGG	5 cut(s)	499, 519, 534, 756, 891
BseRI	GAGGAG	1 cut(s)	847
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	110, 575
Bsh1236I	CGCG	3 cut(s)	32, 89, 433
BshFI	GGCC	2 cut(s)	367, 890
BshNI	GGYRCC	2 cut(s)	270, 449
BshVI	ATCGAT	1 cut(s)	607
BsiHKAI	GWGCWC	2 cut(s)	255, 771
BsiSI	CCGG	2 cut(s)	52, 121
BslI	CCNNNNNNNGG	2 cut(s)	143, 870
BsmAI	GTCTC	2 cut(s)	721, 742
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	2 cut(s)	367, 890
Bsp1286I	GDGCHC	3 cut(s)	255, 275, 771
Bsp143I	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
Bsp19I	CCATGG	1 cut(s)	168
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	8 cut(s)	63, 66, 87, 89, 96, 248, 454, 790
BspANI	GGCC	2 cut(s)	367, 890
BspCNI	CTCAG	2 cut(s)	568, 663
BspDI	ATCGAT	1 cut(s)	607
BspFNI	CGCG	3 cut(s)	32, 89, 433
BspHI	TCATGA	2 cut(s)	235, 556
BspLI	GGNNCC	3 cut(s)	50, 272, 451
BspPI	GGATC	5 cut(s)	35, 150, 325, 525, 612
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	270, 449
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	5 cut(s)	499, 519, 534, 756, 891
BssECI	CCNNGG	3 cut(s)	87, 168, 864
BssMI	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
BssNAI	GTATAC	1 cut(s)	374
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	3 cut(s)	311, 462, 865
Bst4CI	ACNGT	3 cut(s)	508, 801, 895
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	454, 792, 913
BstDEI	CTNAG	2 cut(s)	576, 671
BstDSI	CCRYGG	2 cut(s)	87, 168
BstF5I	GGATG	4 cut(s)	193, 291, 306, 913
BstFNI	CGCG	3 cut(s)	32, 89, 433
BstH2I	RGCGCY	2 cut(s)	150, 453
BstHHI	GCGC	3 cut(s)	149, 435, 452
BstKTI	GATC	7 cut(s)	30, 111, 158, 333, 520, 607, 611
BstMAI	GTCTC	2 cut(s)	721, 742
BstMBI	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 104, 860
BstNI	CCWGG	3 cut(s)	311, 462, 865
BstSCI	CCNGG	3 cut(s)	309, 460, 863
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	3 cut(s)	32, 89, 433
BstV1I	GCAGC	2 cut(s)	110, 575
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	607
BsuI	GTATCC	2 cut(s)	333, 536
BsuRI	GGCC	2 cut(s)	367, 890
BsuTUI	ATCGAT	1 cut(s)	607
BtgI	CCRYGG	2 cut(s)	87, 168
BtsCI	GGATG	4 cut(s)	193, 291, 306, 913
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	5 cut(s)	512, 527, 573, 884, 940
BtuMI	TCGCGA	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	454, 792, 913
CaiI	CAGNNNCTG	1 cut(s)	939
CciI	TCATGA	2 cut(s)	235, 556
CfoI	GCGC	3 cut(s)	149, 435, 452
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	9 cut(s)	169, 236, 267, 395, 488, 557, 566, 723, 745
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	2 cut(s)	576, 671
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	7 cut(s)	29, 110, 157, 332, 519, 606, 610
DpnII	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
DraI	TTTAAA	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	309, 460, 863
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	265
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
FatI	CATG	9 cut(s)	168, 235, 266, 394, 487, 556, 565, 722, 744
FauI	CCCGC	3 cut(s)	94, 461, 783
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	66, 99, 589
FokI	GGATG	4 cut(s)	200, 293, 298, 920
Fsp4HI	GCNGC	3 cut(s)	66, 99, 589
GlaI	GCGC	3 cut(s)	148, 434, 451
GluI	GCNGC	3 cut(s)	66, 99, 589
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	2 cut(s)	150, 453
HaeIII	GGCC	2 cut(s)	367, 890
HapII	CCGG	2 cut(s)	52, 121
HhaI	GCGC	3 cut(s)	149, 435, 452
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
Hin6I	GCGC	3 cut(s)	147, 433, 450
HinP1I	GCGC	3 cut(s)	147, 433, 450
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	3 cut(s)	92, 164, 353
HpaII	CCGG	2 cut(s)	52, 121
Hpy166II	GTNNAC	3 cut(s)	142, 223, 374
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	6 cut(s)	31, 153, 236, 502, 557, 614
Hpy8I	GTNNAC	3 cut(s)	142, 223, 374
HpyAV	CCTTC	2 cut(s)	336, 842
HpyCH4III	ACNGT	3 cut(s)	508, 801, 895
HpyCH4V	TGCA	6 cut(s)	263, 344, 722, 828, 844, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 104, 860
HpyF3I	CTNAG	2 cut(s)	576, 671
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
HspAI	GCGC	3 cut(s)	147, 433, 450
KasI	GGCGCC	1 cut(s)	449
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	766, 851
Lsp1109I	GCAGC	2 cut(s)	110, 575
LweI	GCATC	4 cut(s)	94, 272, 507, 898
MaeIII	GTNAC	4 cut(s)	490, 525, 882, 935
MalI	GATC	7 cut(s)	29, 110, 157, 332, 519, 606, 610
MboI	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
MboII	GAAGA	3 cut(s)	103, 247, 362
MfeI	CAATTG	2 cut(s)	130, 521
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	3 cut(s)	255, 275, 771
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
MluNI	TGGCCA	1 cut(s)	890
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	3 cut(s)	88, 184, 825
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	3 cut(s)	212, 291, 807
MslI	CAYNNNNRTG	2 cut(s)	240, 268
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	2 cut(s)	68, 89
MspI	CCGG	2 cut(s)	52, 121
MspR9I	CCNGG	3 cut(s)	311, 462, 865
MssI	GTTTAAAC	1 cut(s)	292
MunI	CAATTG	2 cut(s)	130, 521
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	3 cut(s)	311, 462, 865
MvnI	CGCG	3 cut(s)	32, 89, 433
MwoI	GCNNNNNNNGC	3 cut(s)	95, 104, 860
NarI	GGCGCC	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
NlaIII	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
NlaIV	GGNNCC	3 cut(s)	50, 272, 451
NmuCI	GTSAC	3 cut(s)	525, 882, 935
NruI	TCGCGA	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	265
PagI	TCATGA	2 cut(s)	235, 556
PciSI	GCTCTTC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	164, 353
PflMI	CCANNNNNTGG	1 cut(s)	870
PkrI	GCNGC	3 cut(s)	67, 100, 590
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	453
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	309, 460, 863
PspGI	CCWGG	3 cut(s)	309, 460, 863
PspN4I	GGNNCC	3 cut(s)	50, 272, 451
PspPI	GGNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	939
PsuI	RGATCY	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	240, 268
SacII	CCGCGG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	212, 291, 807
SatI	GCNGC	3 cut(s)	66, 99, 589
Sau3AI	GATC	7 cut(s)	27, 108, 155, 330, 517, 604, 608
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	311, 462, 865
SduI	GDGCHC	3 cut(s)	255, 275, 771
SetI	ASST	5 cut(s)	80, 195, 590, 649, 761
SfaNI	GCATC	4 cut(s)	94, 272, 507, 898
SfcI	CTRYAG	1 cut(s)	481
SfoI	GGCGCC	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	90
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	240, 268
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
SsiI	CCGC	8 cut(s)	63, 66, 87, 89, 96, 248, 454, 790
SspDI	GGCGCC	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	309, 460, 863
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	508, 801, 895
TaqI	TCGA	3 cut(s)	329, 439, 607
TasI	AATT	8 cut(s)	57, 130, 421, 521, 537, 619, 808, 838
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	164, 353
Tru1I	TTAA	3 cut(s)	212, 291, 807
Tru9I	TTAA	3 cut(s)	212, 291, 807
TscAI	CASTG	5 cut(s)	519, 534, 580, 891, 940
TseFI	GTSAC	3 cut(s)	525, 882, 935
TseI	GCWGC	2 cut(s)	98, 588
Tsp45I	GTSAC	3 cut(s)	525, 882, 935
TspDTI	ATGAA	3 cut(s)	383, 403, 872
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	5 cut(s)	519, 534, 580, 891, 940
Van91I	CCANNNNNTGG	1 cut(s)	870
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	421, 619
XmiI	GTMKAC	1 cut(s)	373
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.