Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

15567403 .. 15569643

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATTAGGGTTTGGGAAAGTGGGATCGTGATATTGGTTTTATGCGTCCGGCTAGTTTGCGCCGCCGAGCCCGCCTCTTGCCCGACGGAGTCCGTTGCCGACACAATCTTCGGCTTCCGGTATTCCAATTGCCCCCTCGACGGCGCTTGCAGATCCGTTGAATCCATGGGTGTTATTGTGGGAGATGAGGTTTCCTTACAAAGGGCATTAAATATGGTTCACAAGAATACTCATGATTATGTGGCGGTGCTCTTCTATGCGTCATGGTGCCCTTTTTCAAGGATGTTTAAACCAACGTTTTCCATCTTGGCTTCTTTGTATCCTTCGATCCCCCATTTTGCATTTGAAGAATCAGCCATCAGGCCAAGTATACTCTCCAAATATGGAGTGCATGGATTTCCTACACTTTTCATTTTGAATTCTACTATGCGTATTCGGTATCAAGGTGCCCGCACTCCTGGTTCTCTTATTGCTTTCTATAGTCATGTTACTGGCTTCAAGACTGTATCACTGGATCAATTGTCACTGGAAAAAATTGGATACCCACTAAATCATGAGAAGCATGATAGCACTGAGCAGGAAAGCTGCCCGTTTTCTTGGGCTCGATCTCCAGAGAATTTGCTTCGGCAAGAAACATATTTAGCTCTGGCTTCTGCTTTTGTGCTTCTGAGATTGCTCTGCTTCTTTTTACCTGCTCTGCTAACGTTTGCTCAATCTGCATGGAGACGGCATATTCAAGACATGATATTGGGGAGCTTGTTGGAGCACCCTTTGGCTTTTCTAAAGCGGGCAGTGCAGTTGTTTAATTCTCTAAAAGAGCCTTGCAAGAGGAGTAATTTGCAGGAAGGAGCAATGAACGCCAGGGTGTGGGCTTCCAAGTCACTTGCCACAGTTTCTATCGGGGATGCAAGCACCAGCAGGGGTTATATCACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

314

Amino Acids

34.95

Weight (kDa)

8.55

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 160	1.6e-09	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccB1I	GGYRCC	2 cut(s)	270, 449
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	5 cut(s)	66, 75, 248, 454, 790
AclI	AACGTT	2 cut(s)	299, 707
AclWI	GGATC	4 cut(s)	35, 150, 325, 525
AcsI	RAATTY	2 cut(s)	421, 619
AfiI	CCNNNNNNNGG	3 cut(s)	143, 204, 870
AgsI	TTSAA	6 cut(s)	164, 282, 350, 421, 502, 740
AjnI	CCWGG	2 cut(s)	460, 863
AluBI	AGCT	3 cut(s)	588, 647, 759
AluI	AGCT	3 cut(s)	588, 647, 759
Alw21I	GWGCWC	2 cut(s)	255, 771
Alw26I	GTCTC	1 cut(s)	721
AlwI	GGATC	4 cut(s)	35, 150, 325, 525
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	421, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	2 cut(s)	65, 149
BaeGI	GKGCMC	2 cut(s)	275, 454
BanI	GGYRCC	2 cut(s)	270, 449
BanII	GRGCYC	2 cut(s)	75, 607
Bbv12I	GWGCWC	2 cut(s)	255, 771
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	2 cut(s)	314, 368
BceAI	ACGGC	2 cut(s)	160, 746
BciT130I	CCWGG	2 cut(s)	462, 865
BciVI	GTATCC	2 cut(s)	333, 536
BcoDI	GTCTC	1 cut(s)	721
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	2 cut(s)	333, 536
BisI	GCNGC	2 cut(s)	66, 589
BlsI	GCNGC	2 cut(s)	67, 590
Bme1390I	CCNGG	2 cut(s)	462, 865
BmiI	GGNNCC	2 cut(s)	272, 451
BmrFI	CCNGG	2 cut(s)	462, 865
BmsI	GCATC	1 cut(s)	898
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	168, 864
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 204, 870
Bse1I	ACTGG	3 cut(s)	499, 519, 534
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	2 cut(s)	462, 865
BseDI	CCNNGG	2 cut(s)	168, 864
BseGI	GGATG	2 cut(s)	291, 913
BseLI	CCNNNNNNNGG	3 cut(s)	143, 204, 870
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	567, 662
BseNI	ACTGG	3 cut(s)	499, 519, 534
BseRI	GAGGAG	1 cut(s)	847
BseSI	GKGCMC	2 cut(s)	275, 454
BseXI	GCAGC	1 cut(s)	575
BsgI	GTGCAG	1 cut(s)	818
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	2 cut(s)	270, 449
BsiHKAI	GWGCWC	2 cut(s)	255, 771
BsiSI	CCGG	2 cut(s)	52, 121
BslI	CCNNNNNNNGG	3 cut(s)	143, 204, 870
BsmAI	GTCTC	1 cut(s)	721
BsmBI	CGTCTC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	6 cut(s)	75, 255, 275, 454, 607, 771
Bsp143I	GATC	5 cut(s)	27, 155, 330, 517, 608
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	5 cut(s)	66, 75, 248, 454, 790
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	568, 663
BspHI	TCATGA	2 cut(s)	235, 556
BspLI	GGNNCC	2 cut(s)	272, 451
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	4 cut(s)	35, 150, 325, 525
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	270, 449
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	499, 519, 534
BssECI	CCNNGG	2 cut(s)	168, 864
BssMI	GATC	5 cut(s)	27, 155, 330, 517, 608
BssNAI	GTATAC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	462, 865
Bst4CI	ACNGT	2 cut(s)	508, 895
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	5 cut(s)	75, 151, 454, 792, 913
BstDEI	CTNAG	2 cut(s)	576, 671
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	291, 913
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	65, 149
BstKTI	GATC	5 cut(s)	30, 158, 333, 520, 611
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	5 cut(s)	27, 155, 330, 517, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 719, 796, 860
BstNI	CCWGG	2 cut(s)	462, 865
BstSCI	CCNGG	2 cut(s)	460, 863
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	2 cut(s)	275, 454
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	333, 536
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	291, 913
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	5 cut(s)	512, 527, 573, 801, 933
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	5 cut(s)	75, 151, 454, 792, 913
CciI	TCATGA	2 cut(s)	235, 556
CfoI	GCGC	2 cut(s)	65, 149
CseI	GACGC	2 cut(s)	37, 252
CviAII	CATG	9 cut(s)	169, 236, 267, 395, 488, 557, 566, 723, 745
DdeI	CTNAG	2 cut(s)	576, 671
DpnI	GATC	5 cut(s)	29, 157, 332, 519, 610
DpnII	GATC	5 cut(s)	27, 155, 330, 517, 608
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	75, 607
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	460, 863
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	75, 607
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	721
FaeI	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
FatI	CATG	9 cut(s)	168, 235, 266, 394, 487, 556, 565, 722, 744
FauI	CCCGC	3 cut(s)	82, 461, 783
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	66, 589
FokI	GGATG	2 cut(s)	298, 920
FriOI	GRGCYC	2 cut(s)	75, 607
Fsp4HI	GCNGC	2 cut(s)	66, 589
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	64, 148
GluI	GCNGC	2 cut(s)	66, 589
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	52, 121
HgaI	GACGC	2 cut(s)	37, 252
HhaI	GCGC	2 cut(s)	65, 149
Hin1II	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
Hin6I	GCGC	2 cut(s)	63, 147
HinP1I	GCGC	2 cut(s)	63, 147
HinfI	GANTC	3 cut(s)	92, 164, 353
HpaII	CCGG	2 cut(s)	52, 121
Hpy166II	GTNNAC	2 cut(s)	223, 374
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	6 cut(s)	31, 236, 502, 557, 614, 740
Hpy8I	GTNNAC	2 cut(s)	223, 374
Hpy99I	CGWCG	2 cut(s)	91, 146
HpyAV	CCTTC	2 cut(s)	336, 842
HpyCH4III	ACNGT	2 cut(s)	508, 895
HpyCH4IV	ACGT	2 cut(s)	299, 707
HpyCH4V	TGCA	8 cut(s)	153, 344, 394, 722, 799, 828, 844, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 719, 796, 860
HpyF3I	CTNAG	2 cut(s)	576, 671
HpySE526I	ACGT	2 cut(s)	299, 707
Hsp92II	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
HspAI	GCGC	2 cut(s)	63, 147
Kzo9I	GATC	5 cut(s)	27, 155, 330, 517, 608
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	756, 766, 851
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	299, 707
MaeIII	GTNAC	3 cut(s)	490, 525, 882
MalI	GATC	5 cut(s)	29, 157, 332, 519, 610
MboI	GATC	5 cut(s)	27, 155, 330, 517, 608
MboII	GAAGA	3 cut(s)	103, 247, 362
MfeI	CAATTG	2 cut(s)	130, 521
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	6 cut(s)	75, 255, 275, 454, 607, 771
MluCI	AATT	7 cut(s)	130, 421, 521, 537, 619, 808, 838
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	4 cut(s)	88, 149, 184, 825
MseI	TTAA	3 cut(s)	212, 291, 807
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	52, 121
MspR9I	CCNGG	2 cut(s)	462, 865
MssI	GTTTAAAC	1 cut(s)	292
MunI	CAATTG	2 cut(s)	130, 521
MvaI	CCWGG	2 cut(s)	462, 865
MwoI	GCNNNNNNNGC	4 cut(s)	74, 719, 796, 860
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	27, 155, 330, 517, 608
NlaIII	CATG	9 cut(s)	172, 239, 270, 398, 491, 560, 569, 726, 748
NlaIV	GGNNCC	2 cut(s)	272, 451
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	525, 882
PagI	TCATGA	2 cut(s)	235, 556
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	164, 353
PflFI	GACNNNGTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	870
PkrI	GCNGC	2 cut(s)	67, 590
PleI	GAGTC	1 cut(s)	100
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	100
Psp1406I	AACGTT	2 cut(s)	299, 707
Psp6I	CCWGG	2 cut(s)	460, 863
PspGI	CCWGG	2 cut(s)	460, 863
PspN4I	GGNNCC	2 cut(s)	272, 451
PsuI	RGATCY	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	212, 291, 807
SatI	GCNGC	2 cut(s)	66, 589
Sau3AI	GATC	5 cut(s)	27, 155, 330, 517, 608
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	462, 865
SduI	GDGCHC	6 cut(s)	75, 255, 275, 454, 607, 771
SetI	ASST	8 cut(s)	195, 302, 451, 590, 649, 697, 710, 761
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	7 cut(s)	130, 421, 521, 537, 619, 808, 838
SsiI	CCGC	5 cut(s)	66, 75, 248, 454, 790
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	460, 863
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	508, 895
TaiI	ACGT	2 cut(s)	302, 710
TaqI	TCGA	3 cut(s)	141, 329, 607
TasI	AATT	7 cut(s)	130, 421, 521, 537, 619, 808, 838
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	164, 353
Tru1I	TTAA	3 cut(s)	212, 291, 807
Tru9I	TTAA	3 cut(s)	212, 291, 807
TscAI	CASTG	5 cut(s)	519, 534, 580, 801, 940
TseFI	GTSAC	2 cut(s)	525, 882
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	2 cut(s)	525, 882
TspDTI	ATGAA	2 cut(s)	403, 872
TspGWI	ACGGA	3 cut(s)	85, 104, 148
TspRI	CASTG	5 cut(s)	519, 534, 580, 801, 940
Tth111I	GACNNNGTC	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	870
XagI	CCTNNNNNAGG	1 cut(s)	202
XapI	RAATTY	2 cut(s)	421, 619
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.