Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008540

Physical Location & Seq

Genomic Coordinates Reverse (-)

42578306 .. 42581234

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G518400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATTAGGGTTTGGCAAACTGGGATCGTGATATTGTTATTATGGGTCCGGCTAATTTCTGCCGCAGAACCCACCTCTTGCCCGACGGAGTCCGTTAGCGATGCGATCTTTGGCTTCCGGTATTCCAGTTGTCCCGCTAACGGCGGTGCCAGATCCGTTGATTCCATCGGTGTTATCGTGGGAGATGAGGTTTCATTACAAAGGGCATTAAATATGGTTCACAAGAATACTCATGAATATGTGGCAGTGCTATTCTATGCATCATGGTGCCCTTTCTCGAGGATGTTTAAACCAACGTTTTCCATCCTAGCTTCTTCGTATCCATCCATCCCGCATTTTGCATTTGAAGAATCTGCTATCAGGCCAAGTATACTCTCTAAGTATGGAGTTCATGGATTTCCTACTATTTTCATTTTGAATTCTACTATGCGTGTGCGGTATCAAGGCTCCCGGACTCCTGGTTCTCTTATTGCTTTCTACAGTGATATTACTGGCATCAAGACTGTATCGCTGGACCAATTGTCCCTGGAAAAGATCGGATACCCACTAAATCATGAGAAGCATGAAAGCACTGAGCAAGAAAGCTGCCCTTTTTCATGGGCTAGATCTCCAGAGAACATGCTTCGGCAAGAAACATATTTAGCTCTGGCCTCTGCTTTTGTGCTTCTGAGATTGCTTTACTTCTTTTTCCCTACTCTACTTTCATTTGCTCAAAGCGCATGGAGACGGAATATCCGAAACATGAGATTGGGGAGCTTGTTGGAGCACCCGTTGGCCTTTCTGAAGCGAGCAGTACAGTTATTTAATTCTCTAAAAGAGCCTTGCAAGAGGAGTAATTTGCAGGAAGGAGCAATGAATGCCAGGGTTTGGGCATCCAAGTCACTTGCCACAGTTTCCATTGGGGATGCAAGCACCAGCAGGGGTTACAGCAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

314

Amino Acids

35.02

Weight (kDa)

9.32

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34780 AT1G34780
fragaria_vesca	FvH4_5g37130
malus_domestica	MD08G1184200.v1.1 MD15G1370700.v1.1
prunus_persica	Prupe.1G518400_v2.0.a1 Prupe.1G518400_v2.0.a1
pyrus_communis	pycom08g15790 pycom15g33240
rosa_chinensis	RchiOBHm_Chr7g0238681 RchiOBHm_Chr7g0243971
rosa_laevigata	RLG00000000818
rosa_multiflora	Rmu_co8170786.1_g000001 Rmu_co8397189.1_g000001 Rmu_sc0006110.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221610
rosa_rugosa	Rorug07G0322900 Rorug07G0323000
rosa_samantha	Rh7AG477400 Rh7BG448700 Rh7CG495400 Rh7DG462300
rosa_wichuraiana	Rw7G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 270
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	5 cut(s)	66, 138, 147, 335, 439
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	35, 150
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	2 cut(s)	143, 870
AgsI	TTSAA	2 cut(s)	350, 421
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	3 cut(s)	460, 528, 863
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	4 cut(s)	314, 588, 647, 759
AluI	AGCT	4 cut(s)	314, 588, 647, 759
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	721
AlwI	GGATC	2 cut(s)	35, 150
AlwNI	CAGNNNCTG	1 cut(s)	939
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	365, 651, 777
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	49, 517
AsuC2I	CCSGG	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	49, 517
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	2 cut(s)	149, 270
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	4 cut(s)	176, 314, 334, 338
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	462, 530, 865
BciVI	GTATCC	2 cut(s)	333, 536
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	721
BfaI	CTAG	2 cut(s)	311, 606
BfmI	CTRYAG	1 cut(s)	481
BfuI	GTATCC	2 cut(s)	333, 536
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	2 cut(s)	66, 589
BlsI	GCNGC	2 cut(s)	67, 590
Bme1390I	CCNGG	4 cut(s)	454, 462, 530, 865
Bme18I	GGWCC	2 cut(s)	49, 517
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	49, 517
BmiI	GGNNCC	4 cut(s)	50, 151, 272, 451
BmrFI	CCNGG	4 cut(s)	454, 462, 530, 865
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	5 cut(s)	94, 272, 507, 884, 898
BmuI	ACTGGG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	528, 864
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 870
Bse1I	ACTGG	3 cut(s)	28, 129, 499
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	3 cut(s)	462, 530, 865
BseDI	CCNNGG	2 cut(s)	528, 864
BseGI	GGATG	6 cut(s)	291, 306, 326, 330, 875, 913
BseLI	CCNNNNNNNGG	2 cut(s)	143, 870
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	567, 662
BseNI	ACTGG	3 cut(s)	28, 129, 499
BseRI	GAGGAG	1 cut(s)	847
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	3 cut(s)	367, 653, 779
BshNI	GGYRCC	2 cut(s)	149, 270
BsiHKAI	GWGCWC	1 cut(s)	771
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	52, 121, 454
BslFI	GGGAC	2 cut(s)	120, 511
BslI	CCNNNNNNNGG	2 cut(s)	143, 870
BsmAI	GTCTC	1 cut(s)	721
BsmBI	CGTCTC	1 cut(s)	721
BsmFI	GGGAC	2 cut(s)	120, 511
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	367, 653, 779
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	275, 771
Bsp143I	GATC	5 cut(s)	27, 108, 155, 537, 608
BspACI	CCGC	5 cut(s)	66, 138, 147, 335, 439
BspANI	GGCC	3 cut(s)	367, 653, 779
BspCNI	CTCAG	2 cut(s)	568, 663
BspHI	TCATGA	2 cut(s)	235, 556
BspLI	GGNNCC	4 cut(s)	50, 151, 272, 451
BspPI	GGATC	2 cut(s)	35, 150
BspT107I	GGYRCC	2 cut(s)	149, 270
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	28, 129, 499
BssECI	CCNNGG	2 cut(s)	528, 864
BssMI	GATC	5 cut(s)	27, 108, 155, 537, 608
BssNAI	GTATAC	1 cut(s)	374
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	3 cut(s)	462, 530, 865
Bst4CI	ACNGT	4 cut(s)	485, 508, 801, 895
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	2 cut(s)	792, 913
BstDEI	CTNAG	3 cut(s)	381, 576, 671
BstF5I	GGATG	6 cut(s)	291, 306, 326, 330, 875, 913
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	5 cut(s)	30, 111, 158, 540, 611
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	5 cut(s)	27, 108, 155, 537, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	719, 860
BstNI	CCWGG	3 cut(s)	462, 530, 865
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	452, 460, 528, 863
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	155, 608
BstYI	RGATCY	2 cut(s)	155, 608
BstZ17I	GTATAC	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	333, 536
BsuRI	GGCC	3 cut(s)	367, 653, 779
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	6 cut(s)	291, 306, 326, 330, 875, 913
BtsI	GCAGTG	2 cut(s)	255, 940
BtsIMutI	CAGTG	4 cut(s)	255, 490, 573, 940
Cac8I	GCNNGC	2 cut(s)	792, 913
CaiI	CAGNNNCTG	1 cut(s)	939
CciI	TCATGA	2 cut(s)	235, 556
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	2 cut(s)	49, 517
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	9 cut(s)	236, 267, 395, 557, 566, 600, 622, 723, 745
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	3 cut(s)	381, 576, 671
DpnI	GATC	5 cut(s)	29, 110, 157, 539, 610
DpnII	GATC	5 cut(s)	27, 108, 155, 537, 608
DraI	TTTAAA	1 cut(s)	292
DriI	GACNNNNNGTC	1 cut(s)	523
Eam1105I	GACNNNNNGTC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	49, 517
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	460, 528, 863
EcoT22I	ATGCAT	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	721
FaeI	CATG	9 cut(s)	239, 270, 398, 560, 569, 603, 625, 726, 748
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	2 cut(s)	120, 511
FatI	CATG	9 cut(s)	235, 266, 394, 556, 565, 599, 621, 722, 744
FauI	CCCGC	2 cut(s)	145, 342
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	66, 589
FokI	GGATG	6 cut(s)	293, 298, 313, 317, 862, 920
Fsp4HI	GCNGC	2 cut(s)	66, 589
FspBI	CTAG	2 cut(s)	311, 606
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	2 cut(s)	66, 589
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	367, 653, 779
HapII	CCGG	3 cut(s)	52, 121, 454
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	9 cut(s)	239, 270, 398, 560, 569, 603, 625, 726, 748
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	4 cut(s)	92, 164, 353, 457
HpaII	CCGG	3 cut(s)	52, 121, 454
Hpy166II	GTNNAC	2 cut(s)	223, 374
Hpy188I	TCNGA	4 cut(s)	542, 672, 740, 786
Hpy188III	TCNNGA	6 cut(s)	31, 236, 280, 502, 557, 614
Hpy8I	GTNNAC	2 cut(s)	223, 374
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	842
HpyCH4III	ACNGT	4 cut(s)	485, 508, 801, 895
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	263, 344, 828, 844, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	719, 860
HpyF3I	CTNAG	3 cut(s)	381, 576, 671
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	9 cut(s)	239, 270, 398, 560, 569, 603, 625, 726, 748
HspAI	GCGC	1 cut(s)	720
Kzo9I	GATC	5 cut(s)	27, 108, 155, 537, 608
LmnI	GCTCC	4 cut(s)	455, 756, 766, 851
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	5 cut(s)	94, 272, 507, 884, 898
MaeI	CTAG	2 cut(s)	311, 606
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	882, 926, 935
MalI	GATC	5 cut(s)	29, 110, 157, 539, 610
MboI	GATC	5 cut(s)	27, 108, 155, 537, 608
MboII	GAAGA	2 cut(s)	309, 362
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	2 cut(s)	155, 608
MhlI	GDGCHC	2 cut(s)	275, 771
MluCI	AATT	5 cut(s)	57, 421, 521, 808, 838
MlyI	GAGTC	2 cut(s)	101, 451
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	5 cut(s)	88, 184, 276, 664, 825
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	3 cut(s)	212, 291, 807
MslI	CAYNNNNRTG	2 cut(s)	240, 268
MspI	CCGG	3 cut(s)	52, 121, 454
MspR9I	CCNGG	4 cut(s)	454, 462, 530, 865
MssI	GTTTAAAC	1 cut(s)	292
MunI	CAATTG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	3 cut(s)	462, 530, 865
MwoI	GCNNNNNNNGC	2 cut(s)	719, 860
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	27, 108, 155, 537, 608
NlaIII	CATG	9 cut(s)	239, 270, 398, 560, 569, 603, 625, 726, 748
NlaIV	GGNNCC	4 cut(s)	50, 151, 272, 451
NmuCI	GTSAC	2 cut(s)	882, 935
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	280
PagI	TCATGA	2 cut(s)	235, 556
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 736
PctI	GAATGC	1 cut(s)	865
PfeI	GAWTC	2 cut(s)	164, 353
PflFI	GACNNNGTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	870
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	67, 590
PleI	GAGTC	2 cut(s)	100, 451
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	2 cut(s)	100, 451
Psp1406I	AACGTT	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	460, 528, 863
PspGI	CCWGG	3 cut(s)	460, 528, 863
PspN4I	GGNNCC	4 cut(s)	50, 151, 272, 451
PspPI	GGNCC	2 cut(s)	49, 517
PstNI	CAGNNNCTG	1 cut(s)	939
PsuI	RGATCY	2 cut(s)	155, 608
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	240, 268
SaqAI	TTAA	3 cut(s)	212, 291, 807
SatI	GCNGC	2 cut(s)	66, 589
Sau3AI	GATC	5 cut(s)	27, 108, 155, 537, 608
Sau96I	GGNCC	2 cut(s)	49, 517
SchI	GAGTC	2 cut(s)	101, 451
ScrFI	CCNGG	4 cut(s)	454, 462, 530, 865
SduI	GDGCHC	2 cut(s)	275, 771
SetI	ASST	7 cut(s)	80, 195, 302, 316, 590, 649, 761
SfaNI	GCATC	5 cut(s)	94, 272, 507, 884, 898
SfcI	CTRYAG	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	49, 517
SlaI	CTCGAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	240, 268
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	5 cut(s)	57, 421, 521, 808, 838
SsiI	CCGC	5 cut(s)	66, 138, 147, 335, 439
SspMI	CTAG	2 cut(s)	311, 606
StyD4I	CCNGG	4 cut(s)	452, 460, 528, 863
TaaI	ACNGT	4 cut(s)	485, 508, 801, 895
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	281
TasI	AATT	5 cut(s)	57, 421, 521, 808, 838
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	164, 353
Tru1I	TTAA	3 cut(s)	212, 291, 807
Tru9I	TTAA	3 cut(s)	212, 291, 807
TscAI	CASTG	4 cut(s)	255, 490, 580, 940
TseFI	GTSAC	2 cut(s)	882, 935
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	2 cut(s)	882, 935
TspDTI	ATGAA	8 cut(s)	186, 252, 383, 403, 582, 588, 696, 872
TspGWI	ACGGA	4 cut(s)	85, 104, 148, 745
TspRI	CASTG	4 cut(s)	255, 490, 580, 940
Tth111I	GACNNNGTC	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	870
VpaK11BI	GGWCC	2 cut(s)	49, 517
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	2 cut(s)	311, 606
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.