AT1G42680
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007030
Physical Location & Seq
Forward (+)
16041656 .. 16042880
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G42680.1

Sequence Viewer

Length: 513 bp
ATGAATCTCGATGCAATACAGAAGCAGAAACTGATGCTTCTTCCTCAGACACATCTTGAGGACGAGTCTGCATTAGTATGGTACTCTGGCAAAGAAGAGAAGCAGATTAAGCTGAGTCAAGTCCTGAGAATTGTTCCTGGACAACGCACGATTTCTTTTTCATCCAGCGGAGAGAGTGGAGCAGGAAAGACTGAGACAACAAAGATAGCGATGCAATACTTGGCTGCTCTTGGAGGTGGAAGTGGGATCGAGTATGAGATACTAAAGACTAATCCCATCTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAACGATAATTCTAGTCGTTTTGGTAAGTTGATAGAAATTCATTTTAGTGAAACAGGGAAGATTTCGGGTGCTCAAATTCAAACATTCAAGAGTGGTTCAATGTACGGAAGGAGAAAGGTCATATCATATATTGTGCATGATAGTAAAGAAGATCAAGAAAGTGTATTTGCAATTTTTGCTGCAGTATATAGACGCTCGTGA

Protein Analysis

170

Amino Acids

18.84

Weight (kDa)

9.25

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myosin_head PF00063 55 - 133 3.1e-33 Myosin head (motor domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 2 cut(s) 348, 387
AfaI GTAC 2 cut(s) 83, 416
AgsI TTSAA 3 cut(s) 392, 400, 411
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 224, 491
ApoI RAATTY 2 cut(s) 348, 387
BauI CACGAG 1 cut(s) 508
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 211, 478
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 492
BisI GCNGC 2 cut(s) 225, 492
BlsI GCNGC 2 cut(s) 226, 493
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 24, 201
BpuEI CTTGAG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 161
BseMII CTCAG 4 cut(s) 59, 104, 116, 183
BseXI GCAGC 2 cut(s) 211, 478
BsiHKAI GWGCWC 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 2 cut(s) 246, 463
BspACI CCGC 1 cut(s) 168
BspCNI CTCAG 4 cut(s) 58, 105, 117, 184
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 1 cut(s) 254
BssMI GATC 2 cut(s) 246, 463
BssSI CACGAG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 488
BstDEI CTNAG 4 cut(s) 45, 113, 125, 192
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 249, 466
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 246, 463
BstMWI GCNNNNNNNGC 2 cut(s) 109, 488
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 211, 478
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 82, 415
CviAII CATG 1 cut(s) 449
CviJI RGCY 2 cut(s) 112, 224
CviKI_1 RGCY 2 cut(s) 112, 224
CviQI GTAC 2 cut(s) 82, 415
DdeI CTNAG 4 cut(s) 45, 113, 125, 192
DpnI GATC 2 cut(s) 248, 465
DpnII GATC 2 cut(s) 246, 463
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 452
FaiI YATR 8 cut(s) 79, 255, 434, 439, 441, 450, 499, 501
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 225, 492
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 225, 492
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 225, 492
Hin1II CATG 1 cut(s) 452
HinfI GANTC 3 cut(s) 4, 65, 115
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 6 cut(s) 8, 56, 124, 400, 467, 510
HpyAV CCTTC 1 cut(s) 414
HpyCH4V TGCA 7 cut(s) 14, 71, 214, 299, 448, 482, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 488
HpyF3I CTNAG 4 cut(s) 45, 113, 125, 192
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 2 cut(s) 246, 463
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 72, 123, 137, 150, 168, 178, 351
Lsp1109I GCAGC 2 cut(s) 211, 478
LweI GCATC 2 cut(s) 24, 201
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 248, 465
MboI GATC 2 cut(s) 246, 463
MboII GAAGA 4 cut(s) 32, 107, 382, 473
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 5 cut(s) 129, 319, 348, 387, 483
MlyI GAGTC 2 cut(s) 74, 124
MnlI CCTC 3 cut(s) 52, 54, 227
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 76, 357
MspA1I CMGCKG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 109, 488
NdeII GATC 2 cut(s) 246, 463
NlaIII CATG 1 cut(s) 452
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 226, 493
PleI GAGTC 2 cut(s) 73, 123
PpsI GAGTC 2 cut(s) 73, 123
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 83, 416
RsaNI GTAC 2 cut(s) 82, 415
RseI CAYNNNNRTG 2 cut(s) 76, 357
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 225, 492
Sau3AI GATC 2 cut(s) 246, 463
SchI GAGTC 2 cut(s) 74, 124
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 385
SetI ASST 3 cut(s) 114, 238, 432
SfaNI GCATC 2 cut(s) 24, 201
SfcI CTRYAG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 76, 357
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 5 cut(s) 129, 319, 348, 387, 483
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 2 cut(s) 9, 249
TasI AATT 5 cut(s) 129, 319, 348, 387, 483
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 2 cut(s) 224, 491
TspDTI ATGAA 3 cut(s) 17, 150, 341
TspGWI ACGGA 1 cut(s) 432
XapI RAATTY 2 cut(s) 348, 387
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.