Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Reverse (-)

6420497 .. 6422986

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11302.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGATGAGTCCGTTCTGATATGGTTCTCAAGGAAGGAGGAGAAACACCTTAAACTAAGCCATGTTTCTAGAATTATTTCCGGGCAATGCACTTGTATTATAAATTACTTCAGTGAAGTCTCCTCGGCAAGTGATCGATGCATGAACTACTTGGGGTGTAGTACTCATATGTTAGGTCAAAGCTGTAAAGCAACCAAAGTACCAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

71

Amino Acids

7.91

Weight (kDa)

8.34

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	2 cut(s)	163, 201
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	82
BaeI	ACNNNNGTAYC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	69
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	92
BseRI	GAGGAG	2 cut(s)	53, 112
BshVI	ATCGAT	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	136
BsuTUI	ATCGAT	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	162, 200
CviAII	CATG	2 cut(s)	62, 142
CviJI	RGCY	2 cut(s)	60, 183
CviKI_1	RGCY	2 cut(s)	60, 183
CviQI	GTAC	2 cut(s)	162, 200
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	143
FaeI	CATG	2 cut(s)	65, 145
FaiI	YATR	6 cut(s)	22, 63, 101, 143, 168, 170
FatI	CATG	2 cut(s)	61, 141
FauNDI	CATATG	1 cut(s)	168
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	69
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	65, 145
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	81
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	90, 141
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	65, 145
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	94
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	69
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MluCI	AATT	2 cut(s)	72, 103
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	31, 133
Mph1103I	ATGCAT	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	51
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	82
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	65, 145
NmeAIII	GCCGAG	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	101
RsaI	GTAC	2 cut(s)	163, 201
RsaNI	GTAC	2 cut(s)	162, 200
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	3 cut(s)	51, 178, 185
SfaNI	GCATC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	72, 103
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	72, 103
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.