Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

53207463 .. 53217828

Gene Structure 10366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG357600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3006 bp

ATGGAGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGCTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAGTTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAGGCAATGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTAGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTCGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCATTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATCATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAGCAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTGCTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACATCCAGTTGCTTTCTAATGGATCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCGGACTTAGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGATGAGGCGGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTTAGTGAGAAACAAGCAGAACAATGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1001

Amino Acids

107.17

Weight (kDa)

8.86

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	162 - 545	4.8e-80	RCC1-like domain
RCC1	PF00415	222 - 271	6.1e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	260 - 285	9e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	274 - 326	4.8e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	313 - 341	7.1e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	330 - 378	1.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	394 - 442	6.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	430 - 458	6.7e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	445 - 494	5.7e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	499 - 546	3.8e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	550 - 616	1.6e-15	FYVE zinc finger
BRX_N	PF13713	813 - 847	1.6e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	853 - 921	3.9e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	927 - 982	1.6e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1731
AatII	GACGTC	1 cut(s)	618
AccB1I	GGYRCC	3 cut(s)	1460, 1792, 2208
AccB7I	CCANNNNNTGG	1 cut(s)	2129
AccI	GTMKAC	5 cut(s)	865, 931, 1344, 2961, 2991
AciI	CCGC	4 cut(s)	1690, 2457, 2695, 2807
AclWI	GGATC	8 cut(s)	1271, 2163, 2176, 2564, 2656, 2670, 2683, 2859
AcoI	YGGCCR	2 cut(s)	1336, 1369
AcsI	RAATTY	4 cut(s)	166, 1449, 2042, 2722
AcuI	CTGAAG	4 cut(s)	141, 303, 2018, 2854
AcyI	GRCGYC	2 cut(s)	615, 2209
AfaI	GTAC	6 cut(s)	342, 375, 609, 797, 833, 2683
AflII	CTTAAG	1 cut(s)	1079
AflIII	ACRYGT	2 cut(s)	934, 2012
AjnI	CCWGG	6 cut(s)	959, 1061, 1193, 2164, 2316, 2836
AjuI	GAANNNNNNNTTGG	8 cut(s)	296, 328, 1131, 1163, 2065, 2097, 2132, 2164
Alw21I	GWGCWC	2 cut(s)	2098, 2341
Alw26I	GTCTC	4 cut(s)	943, 2065, 2432, 2774
AlwI	GGATC	8 cut(s)	1271, 2163, 2176, 2564, 2656, 2670, 2683, 2859
AlwNI	CAGNNNCTG	2 cut(s)	2441, 2479
AoxI	GGCC	3 cut(s)	917, 1336, 1369
ApaI	GGGCCC	1 cut(s)	921
ApoI	RAATTY	4 cut(s)	166, 1449, 2042, 2722
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	2147, 2179
AspLEI	GCGC	1 cut(s)	2211
AspS9I	GGNCC	5 cut(s)	917, 918, 956, 2298, 2633
AsuC2I	CCSGG	2 cut(s)	988, 2924
AsuHPI	GGTGA	9 cut(s)	206, 482, 803, 836, 854, 1019, 1183, 1241, 2256
AvaII	GGWCC	3 cut(s)	956, 2298, 2633
AxyI	CCTNAGG	1 cut(s)	478
BaeGI	GKGCMC	2 cut(s)	876, 921
BalI	TGGCCA	2 cut(s)	1338, 1371
BamHI	GGATCC	2 cut(s)	2168, 2675
BanI	GGYRCC	3 cut(s)	1460, 1792, 2208
BanII	GRGCYC	3 cut(s)	921, 1916, 2098
BauI	CACGAG	2 cut(s)	1247, 1959
BbsI	GAAGAC	2 cut(s)	1079, 1872
Bbv12I	GWGCWC	2 cut(s)	2098, 2341
BbvCI	CCTCAGC	1 cut(s)	30
BciT130I	CCWGG	6 cut(s)	961, 1063, 1195, 2166, 2318, 2838
BclI	TGATCA	3 cut(s)	1666, 1864, 2602
BcnI	CCSGG	2 cut(s)	988, 2924
BcoDI	GTCTC	4 cut(s)	943, 2065, 2432, 2774
BfmI	CTRYAG	5 cut(s)	600, 1629, 1854, 2277, 2372
BfoI	RGCGCY	1 cut(s)	2212
BfrI	CTTAAG	1 cut(s)	1079
BglII	AGATCT	1 cut(s)	1955
Bme1390I	CCNGG	8 cut(s)	961, 988, 1063, 1195, 2166, 2318, 2838, 2924
Bme18I	GGWCC	3 cut(s)	956, 2298, 2633
BmgT120I	GGNCC	5 cut(s)	917, 918, 956, 2298, 2633
BmiI	GGNNCC	8 cut(s)	900, 919, 958, 1462, 1794, 2170, 2210, 2677
BmrFI	CCNGG	8 cut(s)	961, 988, 1063, 1195, 2166, 2318, 2838, 2924
BmrI	ACTGGG	3 cut(s)	904, 1401, 1870
BmsI	GCATC	6 cut(s)	394, 463, 742, 745, 2404, 2422
BmuI	ACTGGG	3 cut(s)	904, 1401, 1870
BpiI	GAAGAC	2 cut(s)	1079, 1872
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	1680
Bpu10I	CCTNAGC	2 cut(s)	30, 2312
BpuEI	CTTGAG	4 cut(s)	1371, 1763, 1900, 2840
BpuMI	CCSGG	2 cut(s)	988, 2924
BsaHI	GRCGYC	2 cut(s)	615, 2209
BsaJI	CCNNGG	8 cut(s)	303, 448, 921, 959, 1061, 1062, 1194, 2629
BsaWI	WCCGGW	1 cut(s)	821
BsaXI	ACNNNNNCTCC	4 cut(s)	504, 534, 2224, 2254
Bse21I	CCTNAGG	1 cut(s)	478
Bse3DI	GCAATG	3 cut(s)	399, 405, 624
BseBI	CCWGG	6 cut(s)	961, 1063, 1195, 2166, 2318, 2838
BseDI	CCNNGG	8 cut(s)	303, 448, 921, 959, 1061, 1062, 1194, 2629
BseGI	GGATG	7 cut(s)	208, 409, 736, 1871, 2135, 2192, 2655
BseMI	GCAATG	3 cut(s)	399, 405, 624
BseMII	CTCAG	4 cut(s)	21, 772, 1485, 1835
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	2 cut(s)	876, 921
BseYI	CCCAGC	1 cut(s)	2213
BsgI	GTGCAG	2 cut(s)	228, 2469
BshFI	GGCC	3 cut(s)	919, 1338, 1371
BshNI	GGYRCC	3 cut(s)	1460, 1792, 2208
BsiHKAI	GWGCWC	2 cut(s)	2098, 2341
BsiSI	CCGG	3 cut(s)	822, 987, 2923
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	4 cut(s)	943, 2065, 2432, 2774
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	919, 1338, 1371
Bsp120I	GGGCCC	1 cut(s)	917
Bsp1286I	GDGCHC	5 cut(s)	876, 921, 1916, 2098, 2341
Bsp1407I	TGTACA	2 cut(s)	373, 831
BspACI	CCGC	4 cut(s)	1690, 2457, 2695, 2807
BspANI	GGCC	3 cut(s)	919, 1338, 1371
BspCNI	CTCAG	4 cut(s)	22, 771, 1486, 1836
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	8 cut(s)	900, 919, 958, 1462, 1794, 2170, 2210, 2677
BspMAI	CTGCAG	2 cut(s)	604, 1633
BspPI	GGATC	8 cut(s)	1271, 2163, 2176, 2564, 2656, 2670, 2683, 2859
BspQI	GCTCTTC	1 cut(s)	1433
BspT107I	GGYRCC	3 cut(s)	1460, 1792, 2208
BspTI	CTTAAG	1 cut(s)	1079
BsrDI	GCAATG	3 cut(s)	399, 405, 624
BsrGI	TGTACA	2 cut(s)	373, 831
BssECI	CCNNGG	8 cut(s)	303, 448, 921, 959, 1061, 1062, 1194, 2629
BssNAI	GTATAC	2 cut(s)	932, 1345
BssNI	GRCGYC	2 cut(s)	615, 2209
BssSI	CACGAG	2 cut(s)	1247, 1959
BssT1I	CCWWGG	4 cut(s)	303, 448, 921, 2629
Bst1107I	GTATAC	2 cut(s)	932, 1345
Bst2BI	CACGAG	2 cut(s)	1247, 1959
Bst2UI	CCWGG	6 cut(s)	961, 1063, 1195, 2166, 2318, 2838
Bst4CI	ACNGT	5 cut(s)	380, 1096, 1172, 1318, 1812
Bst6I	CTCTTC	2 cut(s)	1433, 1888
BstACI	GRCGYC	2 cut(s)	615, 2209
BstAFI	CTTAAG	1 cut(s)	1079
BstAPI	GCANNNNNTGC	2 cut(s)	404, 2441
BstAUI	TGTACA	2 cut(s)	373, 831
BstC8I	GCNNGC	2 cut(s)	704, 1101
BstDEI	CTNAG	8 cut(s)	30, 478, 758, 1494, 1844, 2312, 2333, 2731
BstENI	CCTNNNNNAGG	1 cut(s)	2315
BstF5I	GGATG	7 cut(s)	208, 409, 736, 1871, 2135, 2192, 2655
BstH2I	RGCGCY	1 cut(s)	2212
BstHHI	GCGC	1 cut(s)	2211
BstMAI	GTCTC	4 cut(s)	943, 2065, 2432, 2774
BstMWI	GCNNNNNNNGC	6 cut(s)	404, 444, 742, 1616, 1790, 2441
BstNI	CCWGG	6 cut(s)	961, 1063, 1195, 2166, 2318, 2838
BstNSI	RCATGY	3 cut(s)	647, 938, 2628
BstSCI	CCNGG	8 cut(s)	959, 986, 1061, 1193, 2164, 2316, 2836, 2922
BstSFI	CTRYAG	5 cut(s)	600, 1629, 1854, 2277, 2372
BstSLI	GKGCMC	2 cut(s)	876, 921
BstV2I	GAAGAC	2 cut(s)	1079, 1872
BstX2I	RGATCY	4 cut(s)	1955, 2168, 2675, 2851
BstXI	CCANNNNNNTGG	2 cut(s)	455, 1069
BstYI	RGATCY	4 cut(s)	1955, 2168, 2675, 2851
BstZ17I	GTATAC	2 cut(s)	932, 1345
Bsu36I	CCTNAGG	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	919, 1338, 1371
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	7 cut(s)	208, 409, 736, 1871, 2135, 2192, 2655
BtsI	GCAGTG	2 cut(s)	609, 2093
BtsIMutI	CAGTG	8 cut(s)	49, 433, 609, 892, 1092, 2093, 2477, 3001
Cac8I	GCNNGC	2 cut(s)	704, 1101
CaiI	CAGNNNCTG	2 cut(s)	2441, 2479
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	2211
Cfr13I	GGNCC	5 cut(s)	917, 918, 956, 2298, 2633
Csp6I	GTAC	6 cut(s)	341, 374, 608, 796, 832, 2682
CspCI	CAANNNNNGTGG	2 cut(s)	1555, 1590
CviQI	GTAC	6 cut(s)	341, 374, 608, 796, 832, 2682
DdeI	CTNAG	8 cut(s)	30, 478, 758, 1494, 1844, 2312, 2333, 2731
DinI	GGCGCC	1 cut(s)	2210
DraI	TTTAAA	1 cut(s)	1708
EaeI	YGGCCR	2 cut(s)	1336, 1369
Eam1104I	CTCTTC	2 cut(s)	1433, 1888
EarI	CTCTTC	2 cut(s)	1433, 1888
Ecl136II	GAGCTC	1 cut(s)	2096
Eco130I	CCWWGG	4 cut(s)	303, 448, 921, 2629
Eco24I	GRGCYC	3 cut(s)	921, 1916, 2098
Eco47I	GGWCC	3 cut(s)	956, 2298, 2633
Eco53kI	GAGCTC	1 cut(s)	2096
Eco57I	CTGAAG	4 cut(s)	141, 303, 2018, 2854
Eco81I	CCTNAGG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	2096
EcoNI	CCTNNNNNAGG	1 cut(s)	2315
EcoO109I	RGGNCCY	1 cut(s)	918
EcoRI	GAATTC	3 cut(s)	166, 2042, 2722
EcoRII	CCWGG	6 cut(s)	959, 1061, 1193, 2164, 2316, 2836
EcoT14I	CCWWGG	4 cut(s)	303, 448, 921, 2629
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	3 cut(s)	921, 1916, 2098
EgeI	GGCGCC	1 cut(s)	2210
EheI	GGCGCC	1 cut(s)	2210
ErhI	CCWWGG	4 cut(s)	303, 448, 921, 2629
FalI	AAGNNNNNCTT	6 cut(s)	1203, 1235, 2132, 2164, 2755, 2787
FaqI	GGGAC	1 cut(s)	281
FauI	CCCGC	1 cut(s)	2800
FbaI	TGATCA	3 cut(s)	1666, 1864, 2602
FblI	GTMKAC	5 cut(s)	865, 931, 1344, 2961, 2991
FokI	GGATG	7 cut(s)	215, 416, 723, 1858, 2122, 2179, 2642
FriOI	GRGCYC	3 cut(s)	921, 1916, 2098
GlaI	GCGC	1 cut(s)	2210
GsaI	CCCAGC	1 cut(s)	2217
GsuI	CTGGAG	1 cut(s)	1680
HaeII	RGCGCY	1 cut(s)	2212
HaeIII	GGCC	3 cut(s)	919, 1338, 1371
HapII	CCGG	3 cut(s)	822, 987, 2923
HhaI	GCGC	1 cut(s)	2211
Hin1I	GRCGYC	2 cut(s)	615, 2209
Hin6I	GCGC	1 cut(s)	2209
HinP1I	GCGC	1 cut(s)	2209
HindIII	AAGCTT	1 cut(s)	743
HpaII	CCGG	3 cut(s)	822, 987, 2923
HphI	GGTGA	9 cut(s)	206, 482, 803, 836, 854, 1019, 1183, 1241, 2256
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	9 cut(s)	193, 227, 233, 327, 382, 497, 1652, 1703, 2488
HpyCH4III	ACNGT	5 cut(s)	380, 1096, 1172, 1318, 1812
HpyCH4IV	ACGT	2 cut(s)	615, 2014
HpyF10VI	GCNNNNNNNGC	6 cut(s)	404, 444, 742, 1616, 1790, 2441
HpyF3I	CTNAG	8 cut(s)	30, 478, 758, 1494, 1844, 2312, 2333, 2731
HpySE526I	ACGT	2 cut(s)	615, 2014
Hsp92I	GRCGYC	2 cut(s)	615, 2209
HspAI	GCGC	1 cut(s)	2209
KasI	GGCGCC	1 cut(s)	2208
Ksp22I	TGATCA	3 cut(s)	1666, 1864, 2602
LguI	GCTCTTC	1 cut(s)	1433
LmnI	GCTCC	6 cut(s)	102, 1407, 1517, 2093, 2383, 2522
LweI	GCATC	6 cut(s)	394, 463, 742, 745, 2404, 2422
MaeII	ACGT	2 cut(s)	615, 2014
MboII	GAAGA	9 cut(s)	1079, 1420, 1457, 1872, 1905, 1974, 2010, 2011, 2140
MfeI	CAATTG	5 cut(s)	992, 1828, 2424, 2489, 2606
MflI	RGATCY	4 cut(s)	1955, 2168, 2675, 2851
MhlI	GDGCHC	5 cut(s)	876, 921, 1916, 2098, 2341
MlsI	TGGCCA	2 cut(s)	1338, 1371
MluNI	TGGCCA	2 cut(s)	1338, 1371
Mly113I	GGCGCC	1 cut(s)	2209
MlyI	GAGTC	4 cut(s)	104, 898, 2067, 2633
MmeI	TCCRAC	3 cut(s)	526, 2267, 2500
Mox20I	TGGCCA	2 cut(s)	1338, 1371
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	2147, 2179
MscI	TGGCCA	2 cut(s)	1338, 1371
MseI	TTAA	7 cut(s)	50, 59, 1080, 1481, 1707, 2100, 2118
MslI	CAYNNNNRTG	3 cut(s)	465, 804, 879
Msp20I	TGGCCA	2 cut(s)	1338, 1371
MspA1I	CMGCKG	2 cut(s)	971, 2407
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	3 cut(s)	822, 987, 2923
MspR9I	CCNGG	8 cut(s)	961, 988, 1063, 1195, 2166, 2318, 2838, 2924
MunI	CAATTG	5 cut(s)	992, 1828, 2424, 2489, 2606
MvaI	CCWGG	6 cut(s)	961, 1063, 1195, 2166, 2318, 2838
MwoI	GCNNNNNNNGC	6 cut(s)	404, 444, 742, 1616, 1790, 2441
NarI	GGCGCC	1 cut(s)	2209
NciI	CCSGG	2 cut(s)	988, 2924
NlaIV	GGNNCC	8 cut(s)	900, 919, 958, 1462, 1794, 2170, 2210, 2677
NmuCI	GTSAC	7 cut(s)	890, 1229, 1773, 1823, 1919, 2475, 2705
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	3 cut(s)	647, 938, 2628
PagI	TCATGA	1 cut(s)	460
PasI	CCCWGGG	1 cut(s)	1062
PciI	ACATGT	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	1433
PcsI	WCGNNNNNNNCGW	2 cut(s)	2732, 2872
PdmI	GAANNNNTTC	2 cut(s)	2147, 2179
PfeI	GAWTC	8 cut(s)	323, 572, 596, 692, 1073, 1949, 1991, 2768
PflMI	CCANNNNNTGG	1 cut(s)	2129
PfoI	TCCNGGA	1 cut(s)	2164
PleI	GAGTC	4 cut(s)	103, 897, 2066, 2633
PluTI	GGCGCC	1 cut(s)	2212
PpsI	GAGTC	4 cut(s)	103, 897, 2066, 2633
PscI	ACATGT	1 cut(s)	934
PshBI	ATTAAT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	1731
Psp124BI	GAGCTC	1 cut(s)	2098
Psp6I	CCWGG	6 cut(s)	959, 1061, 1193, 2164, 2316, 2836
PspFI	CCCAGC	1 cut(s)	2213
PspGI	CCWGG	6 cut(s)	959, 1061, 1193, 2164, 2316, 2836
PspN4I	GGNNCC	8 cut(s)	900, 919, 958, 1462, 1794, 2170, 2210, 2677
PspOMI	GGGCCC	1 cut(s)	917
PspPI	GGNCC	5 cut(s)	917, 918, 956, 2298, 2633
PsrI	GAACNNNNNNTAC	2 cut(s)	2683, 2715
PstI	CTGCAG	2 cut(s)	604, 1633
PstNI	CAGNNNCTG	2 cut(s)	2441, 2479
PsuI	RGATCY	4 cut(s)	1955, 2168, 2675, 2851
PvuII	CAGCTG	2 cut(s)	971, 2407
RsaI	GTAC	6 cut(s)	342, 375, 609, 797, 833, 2683
RsaNI	GTAC	6 cut(s)	341, 374, 608, 796, 832, 2682
RseI	CAYNNNNRTG	3 cut(s)	465, 804, 879
SacI	GAGCTC	1 cut(s)	2098
SapI	GCTCTTC	1 cut(s)	1433
SaqAI	TTAA	7 cut(s)	50, 59, 1080, 1481, 1707, 2100, 2118
Sau96I	GGNCC	5 cut(s)	917, 918, 956, 2298, 2633
SchI	GAGTC	4 cut(s)	104, 898, 2067, 2633
ScrFI	CCNGG	8 cut(s)	961, 988, 1063, 1195, 2166, 2318, 2838, 2924
SduI	GDGCHC	5 cut(s)	876, 921, 1916, 2098, 2341
SfaNI	GCATC	6 cut(s)	394, 463, 742, 745, 2404, 2422
SfcI	CTRYAG	5 cut(s)	600, 1629, 1854, 2277, 2372
SfoI	GGCGCC	1 cut(s)	2210
SinI	GGWCC	3 cut(s)	956, 2298, 2633
SmiMI	CAYNNNNRTG	3 cut(s)	465, 804, 879
SmlI	CTYRAG	5 cut(s)	1079, 1386, 1778, 1915, 2855
SmoI	CTYRAG	5 cut(s)	1079, 1386, 1778, 1915, 2855
SsiI	CCGC	4 cut(s)	1690, 2457, 2695, 2807
SspDI	GGCGCC	1 cut(s)	2208
SspI	AATATT	1 cut(s)	2104
SstI	GAGCTC	1 cut(s)	2098
StyD4I	CCNGG	8 cut(s)	959, 986, 1061, 1193, 2164, 2316, 2836, 2922
StyI	CCWWGG	4 cut(s)	303, 448, 921, 2629
TaaI	ACNGT	5 cut(s)	380, 1096, 1172, 1318, 1812
TaiI	ACGT	2 cut(s)	618, 2017
TaqI	TCGA	7 cut(s)	79, 612, 1163, 1275, 1416, 2056, 2359
TatI	WGTACW	3 cut(s)	340, 373, 831
TauI	GCSGC	2 cut(s)	1692, 2459
TfiI	GAWTC	8 cut(s)	323, 572, 596, 692, 1073, 1949, 1991, 2768
Tru1I	TTAA	7 cut(s)	50, 59, 1080, 1481, 1707, 2100, 2118
Tru9I	TTAA	7 cut(s)	50, 59, 1080, 1481, 1707, 2100, 2118
TscAI	CASTG	7 cut(s)	49, 433, 609, 899, 1099, 2093, 2484
TseFI	GTSAC	7 cut(s)	890, 1229, 1773, 1823, 1919, 2475, 2705
Tsp45I	GTSAC	7 cut(s)	890, 1229, 1773, 1823, 1919, 2475, 2705
TspGWI	ACGGA	3 cut(s)	163, 891, 2545
TspRI	CASTG	7 cut(s)	49, 433, 609, 899, 1099, 2093, 2484
Van91I	CCANNNNNTGG	1 cut(s)	2129
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	3 cut(s)	956, 2298, 2633
VspI	ATTAAT	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	2315
XapI	RAATTY	4 cut(s)	166, 1449, 2042, 2722
XbaI	TCTAGA	1 cut(s)	2183
XceI	RCATGY	3 cut(s)	647, 938, 2628
XmiI	GTMKAC	5 cut(s)	865, 931, 1344, 2961, 2991
XmnI	GAANNNNTTC	2 cut(s)	2147, 2179
ZraI	GACGTC	1 cut(s)	616
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.