Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

21017581 .. 21025838

Gene Structure 8258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGTCGCGGACGGATAGGATGGCCTCTGATCTTAGCAGGACCGGTCCGGTTGAAAGAGACATTGAGCAGGCTGTTACTGCTTTGAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCGGTTCTGATATGGTTCTCTGGGAAGGAGGAAAAACGCCTTAAACTAAGCCATGTTTCTAGAATTATTTCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAGAAAGAGTATCAGTCATTTTCTCTTATATATAATGATAGATCACTGGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTATGGTTTAGTGGTTTAAAAGCATTAATATCACGCAGCCATCATCGAAAATGGAGAACAGAGTCAAGGAGTGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCTTTTGGGAGTAATGATAGTTCACAGAAGGATGGTGCAGATCACCTTCGTCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTTTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCAGAAAGTATACACGGTCAGATGAAGGCGGCAATGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAATTCTGCCGCCAAAATGGATTCTTTGTTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGATGTCCAAAACATTGCCTGTGGTAGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGCGTAGATGTTGATGTTTCGCATCCAAAGCTTATTGATGCCCTTAGTAATGTGAACATTGATTTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCCTTTCTGGTGATCTGTACACATGGGGTGATGGCACTTATAACTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCCATATCTTGTGGGCCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGACGGCACATTTGGTGTTCTGGGACATGGAGACATGAAAAGTAATTCAATTCCAAGGGAAGTGGAATCTCTTAAAGGTCTTCGCACTGTGCGAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTCGAAGTCATGGTTGGCAATTCAAGTTCGAGTAACTGTTCTTTAGGGAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGAGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCAGTCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCACTTACTACATCTGGCCACGTGTATACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGCCGGGTCGAGGGAAAGCTATTGAAGAGTATAGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGAAAATGGTCGTTTAGGCCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTCGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCTTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTGTCAGGAGTTGATCAATCAATGTGTTCAGGCTGCCGTCTTCCATTCAATTTTAAAAGAAAGCGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCCTCAATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATTGAAACTGATTATTCATCCCAGTCTTCCGTGAGCAGAAGAGGAAGTATCAATCAGGGTTCAAGTGACAGCATTGATAAAGATGATAAAGTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTTAATAGTAGCCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCAGCTTCTGTTCCTGGATCCAGAATTGTTTCCAGAGCAACATCCCCCATTTCAAGGCGCCCCAGCCCACCACGTTCTACAACGCCAACTCCAACTCTGGGAGGACTTACGTCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTGGAAACTCTTGCTCGAAAAGCTCAACTACAGGAAGTGGAGCTGGAAAGAACTACTAAACAGCTGAAAGAAGCAATAGCAATTGCAGGTGCAGAGACTGCAAAACGCAATGTCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGGTTGCCTGTTGGAGCAGCACGAAATATCAAATCACCCTCTCTTGCTTCTTTGGGCTCTGATCCTTCCAATGAAGTTTCTGGTGCTTCTGTTGATCAAATGAACGGTCAAGTAACATGCCAAGGACCAGACTGCAATGGATCAAACAGCCAGTTGCTTTCTAATGGGTCCAGTACCACCAGTAACCGCAGTTCTGGACACAACAAACAAGGGAATTCAGACGTAGCAACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCATGTAATGAGATTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGTTTCAGTCGTAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGCAGACAAGTCTAGTGTAGGGGTTGGGAGTGTAGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1110

Amino Acids

119.78

Weight (kDa)

9.19

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	22 - 128	1.5e-09	Pleckstrin homology domain
WD40_RLD	PF25390	270 - 653	5.7e-80	RCC1-like domain
RCC1	PF00415	330 - 379	7.9e-11	Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD	PF25384	331 - 439	3.6e-06	Alsin RCC1-like domain
RCC1	PF00415	382 - 434	4.2e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	421 - 449	6.2e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	438 - 486	1.1e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	502 - 550	5.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	538 - 566	5.9e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	553 - 602	1.4e-07	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	607 - 654	1.1e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	658 - 724	1.3e-15	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1179, 2055
AarI	CACCTGC	1 cut(s)	2744
Acc36I	ACCTGC	1 cut(s)	2744
AccB1I	GGYRCC	3 cut(s)	1784, 2116, 2532
AccB7I	CCANNNNNTGG	1 cut(s)	2453
AccI	GTMKAC	6 cut(s)	694, 961, 1189, 1255, 1670, 3315
AccII	CGCG	1 cut(s)	7
AciI	CCGC	5 cut(s)	7, 145, 713, 885, 3019
AclWI	GGATC	5 cut(s)	2487, 2500, 2888, 2980, 3183
AcoI	YGGCCR	2 cut(s)	1660, 1693
AcsI	RAATTY	5 cut(s)	432, 487, 1773, 2366, 3046
AcuI	CTGAAG	3 cut(s)	462, 624, 2342
AcvI	CACGTG	1 cut(s)	1666
AcyI	GRCGYC	1 cut(s)	2533
AfaI	GTAC	6 cut(s)	110, 663, 933, 1121, 1157, 3007
AflIII	ACRYGT	3 cut(s)	1258, 1665, 2336
AgeI	ACCGGT	1 cut(s)	41
AjnI	CCWGG	6 cut(s)	1283, 1517, 2488, 2640, 3130, 3160
AjuI	GAANNNNNNNTTGG	8 cut(s)	617, 649, 1455, 1487, 2389, 2421, 2456, 2488
Alw21I	GWGCWC	2 cut(s)	2422, 2665
Alw26I	GTCTC	6 cut(s)	51, 1267, 1356, 1548, 2389, 2756
AlwI	GGATC	5 cut(s)	2487, 2500, 2888, 2980, 3183
AlwNI	CAGNNNCTG	3 cut(s)	2483, 2765, 2803
AoxI	GGCC	8 cut(s)	21, 269, 1241, 1280, 1660, 1693, 1858, 2106
ApaI	GGGCCC	2 cut(s)	1245, 1284
ApeKI	GCWGC	9 cut(s)	390, 971, 1427, 1451, 1589, 1955, 2010, 2085, 2849
ApoI	RAATTY	5 cut(s)	432, 487, 1773, 2366, 3046
ArsI	GACNNNNNNTTYG	4 cut(s)	1325, 1357, 2923, 2955
AseI	ATTAAT	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	41
Asp700I	GAANNNNTTC	5 cut(s)	229, 877, 1511, 2471, 2503
AspLEI	GCGC	2 cut(s)	2043, 2535
AspS9I	GGNCC	9 cut(s)	39, 44, 1241, 1242, 1280, 1281, 2622, 2957, 3000
AsuC2I	CCSGG	4 cut(s)	235, 1312, 1736, 3248
AsuHPI	GGTGA	9 cut(s)	527, 806, 1127, 1160, 1178, 1343, 1507, 2580, 2859
AvaII	GGWCC	5 cut(s)	39, 44, 2622, 2957, 3000
BaeGI	GKGCMC	3 cut(s)	1200, 1245, 1284
BalI	TGGCCA	2 cut(s)	1662, 1695
BamHI	GGATCC	1 cut(s)	2492
BanI	GGYRCC	3 cut(s)	1784, 2116, 2532
BanII	GRGCYC	4 cut(s)	1245, 1284, 2422, 2891
BauI	CACGAG	1 cut(s)	2283
BbrPI	CACGTG	1 cut(s)	1666
BbsI	GAAGAC	4 cut(s)	536, 1403, 2009, 2196
Bbv12I	GWGCWC	2 cut(s)	2422, 2665
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	9 cut(s)	402, 983, 1438, 1439, 1601, 1967, 1997, 2097, 2861
BceAI	ACGGC	3 cut(s)	284, 1351, 1998
BciT130I	CCWGG	6 cut(s)	1285, 1519, 2490, 2642, 3132, 3162
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	2 cut(s)	1990, 2926
BcnI	CCSGG	4 cut(s)	235, 1312, 1736, 3248
BcoDI	GTCTC	6 cut(s)	51, 1267, 1356, 1548, 2389, 2756
BfaI	CTAG	7 cut(s)	222, 651, 977, 2298, 2363, 3063, 3294
BfmI	CTRYAG	4 cut(s)	924, 1953, 2601, 2696
BfoI	RGCGCY	2 cut(s)	2044, 2536
BfuAI	ACCTGC	1 cut(s)	2744
BfuI	GTATCC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	2114
BglII	AGATCT	1 cut(s)	2279
Bme18I	GGWCC	5 cut(s)	39, 44, 2622, 2957, 3000
BmgT120I	GGNCC	9 cut(s)	39, 44, 1241, 1242, 1280, 1281, 2622, 2957, 3000
BmiI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
BmrI	ACTGGG	2 cut(s)	1228, 2194
BmsI	GCATC	4 cut(s)	718, 787, 1066, 1069
BmuI	ACTGGG	2 cut(s)	1228, 2194
BoxI	GACNNNNGTC	1 cut(s)	2584
BpiI	GAAGAC	4 cut(s)	536, 1403, 2009, 2196
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	2 cut(s)	351, 2636
BpuEI	CTTGAG	4 cut(s)	89, 1695, 2087, 3164
BpuMI	CCSGG	4 cut(s)	235, 1312, 1736, 3248
BsaAI	YACGTR	1 cut(s)	1666
BsaHI	GRCGYC	1 cut(s)	2533
BsaWI	WCCGGW	2 cut(s)	41, 46
BsaXI	ACNNNNNCTCC	4 cut(s)	828, 858, 2548, 2578
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	5 cut(s)	723, 729, 948, 2782, 2974
BseBI	CCWGG	6 cut(s)	1285, 1519, 2490, 2642, 3132, 3162
BseGI	GGATG	8 cut(s)	24, 529, 733, 1060, 1265, 2195, 2459, 2516
BseMI	GCAATG	5 cut(s)	723, 729, 948, 2782, 2974
BseMII	CTCAG	6 cut(s)	264, 342, 699, 1809, 2159, 2490
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	3 cut(s)	1200, 1245, 1284
BseXI	GCAGC	9 cut(s)	402, 983, 1438, 1439, 1601, 1967, 1997, 2097, 2861
BseYI	CCCAGC	2 cut(s)	1730, 2537
BsgI	GTGCAG	3 cut(s)	549, 2778, 2793
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	8 cut(s)	23, 271, 1243, 1282, 1662, 1695, 1860, 2108
BshNI	GGYRCC	3 cut(s)	1784, 2116, 2532
BshTI	ACCGGT	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	2422, 2665
BsiSI	CCGG	6 cut(s)	42, 47, 234, 1311, 1735, 3247
BslFI	GGGAC	3 cut(s)	602, 1368, 1587
BsmAI	GTCTC	6 cut(s)	51, 1267, 1356, 1548, 2389, 2756
BsmFI	GGGAC	3 cut(s)	602, 1368, 1587
BsnI	GGCC	8 cut(s)	23, 271, 1243, 1282, 1662, 1695, 1860, 2108
Bsp120I	GGGCCC	2 cut(s)	1241, 1280
Bsp1286I	GDGCHC	6 cut(s)	1200, 1245, 1284, 2422, 2665, 2891
Bsp1407I	TGTACA	1 cut(s)	1155
Bsp19I	CCATGG	1 cut(s)	1861
BspACI	CCGC	5 cut(s)	7, 145, 713, 885, 3019
BspANI	GGCC	8 cut(s)	23, 271, 1243, 1282, 1662, 1695, 1860, 2108
BspCNI	CTCAG	6 cut(s)	265, 343, 698, 1810, 2160, 2489
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
BspMAI	CTGCAG	2 cut(s)	928, 1957
BspMI	ACCTGC	1 cut(s)	2744
BspPI	GGATC	5 cut(s)	2487, 2500, 2888, 2980, 3183
BspT107I	GGYRCC	3 cut(s)	1784, 2116, 2532
BsrDI	GCAATG	5 cut(s)	723, 729, 948, 2782, 2974
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	1155
BssAI	RCCGGY	1 cut(s)	41
BssNAI	GTATAC	3 cut(s)	695, 1256, 1671
BssNI	GRCGYC	1 cut(s)	2533
BssSI	CACGAG	1 cut(s)	2283
BssT1I	CCWWGG	7 cut(s)	624, 772, 801, 1245, 1385, 1861, 2953
Bst1107I	GTATAC	3 cut(s)	695, 1256, 1671
Bst2BI	CACGAG	1 cut(s)	2283
Bst2UI	CCWGG	6 cut(s)	1285, 1519, 2490, 2642, 3132, 3162
Bst4CI	ACNGT	7 cut(s)	701, 1420, 1496, 1642, 2136, 2939, 3231
Bst6I	CTCTTC	2 cut(s)	1751, 2212
BstACI	GRCGYC	1 cut(s)	2533
BstAPI	GCANNNNNTGC	2 cut(s)	728, 2765
BstAUI	TGTACA	1 cut(s)	1155
BstBAI	YACGTR	1 cut(s)	1666
BstC8I	GCNNGC	3 cut(s)	69, 1028, 1425
BstDSI	CCRYGG	2 cut(s)	266, 1861
BstENI	CCTNNNNNAGG	1 cut(s)	2639
BstF5I	GGATG	8 cut(s)	24, 529, 733, 1060, 1265, 2195, 2459, 2516
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	2 cut(s)	2044, 2536
BstHHI	GCGC	2 cut(s)	2043, 2535
BstMAI	GTCTC	6 cut(s)	51, 1267, 1356, 1548, 2389, 2756
BstNI	CCWGG	6 cut(s)	1285, 1519, 2490, 2642, 3132, 3162
BstNSI	RCATGY	3 cut(s)	971, 1262, 2952
BstPAI	GACNNNNGTC	1 cut(s)	2584
BstSFI	CTRYAG	4 cut(s)	924, 1953, 2601, 2696
BstSLI	GKGCMC	3 cut(s)	1200, 1245, 1284
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	9 cut(s)	402, 983, 1438, 1439, 1601, 1967, 1997, 2097, 2861
BstV2I	GAAGAC	4 cut(s)	536, 1403, 2009, 2196
BstX2I	RGATCY	3 cut(s)	2279, 2492, 3175
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	3 cut(s)	2279, 2492, 3175
BstZ17I	GTATAC	3 cut(s)	695, 1256, 1671
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	8 cut(s)	23, 271, 1243, 1282, 1662, 1695, 1860, 2108
BtgI	CCRYGG	2 cut(s)	266, 1861
BtsCI	GGATG	8 cut(s)	24, 529, 733, 1060, 1265, 2195, 2459, 2516
BtsI	GCAGTG	2 cut(s)	933, 2417
BtsIMutI	CAGTG	9 cut(s)	317, 757, 933, 1216, 1416, 2417, 2801, 3236, 3325
BveI	ACCTGC	1 cut(s)	2744
Cac8I	GCNNGC	3 cut(s)	69, 1028, 1425
CaiI	CAGNNNCTG	3 cut(s)	2483, 2765, 2803
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	2 cut(s)	2043, 2535
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	9 cut(s)	39, 44, 1241, 1242, 1280, 1281, 2622, 2957, 3000
CpoI	CGGWCCG	1 cut(s)	44
Csp6I	GTAC	6 cut(s)	109, 662, 932, 1120, 1156, 3006
CspAI	ACCGGT	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	1374, 1409
CspI	CGGWCCG	1 cut(s)	44
CviQI	GTAC	6 cut(s)	109, 662, 932, 1120, 1156, 3006
DinI	GGCGCC	1 cut(s)	2534
DraI	TTTAAA	2 cut(s)	372, 2032
EaeI	YGGCCR	2 cut(s)	1660, 1693
Eam1104I	CTCTTC	2 cut(s)	1751, 2212
EarI	CTCTTC	2 cut(s)	1751, 2212
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	2420
Eco130I	CCWWGG	7 cut(s)	624, 772, 801, 1245, 1385, 1861, 2953
Eco147I	AGGCCT	1 cut(s)	2108
Eco24I	GRGCYC	4 cut(s)	1245, 1284, 2422, 2891
Eco47I	GGWCC	5 cut(s)	39, 44, 2622, 2957, 3000
Eco53kI	GAGCTC	1 cut(s)	2420
Eco57I	CTGAAG	3 cut(s)	462, 624, 2342
Eco72I	CACGTG	1 cut(s)	1666
EcoICRI	GAGCTC	1 cut(s)	2420
EcoNI	CCTNNNNNAGG	1 cut(s)	2639
EcoO109I	RGGNCCY	2 cut(s)	1242, 1281
EcoRI	GAATTC	3 cut(s)	432, 487, 3046
EcoRII	CCWGG	6 cut(s)	1283, 1517, 2488, 2640, 3130, 3160
EcoT14I	CCWWGG	7 cut(s)	624, 772, 801, 1245, 1385, 1861, 2953
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	4 cut(s)	1245, 1284, 2422, 2891
EgeI	GGCGCC	1 cut(s)	2534
EheI	GGCGCC	1 cut(s)	2534
ErhI	CCWWGG	7 cut(s)	624, 772, 801, 1245, 1385, 1861, 2953
FalI	AAGNNNNNCTT	8 cut(s)	1527, 1559, 1554, 1586, 1918, 1950, 2456, 2488
FaqI	GGGAC	3 cut(s)	602, 1368, 1587
FbaI	TGATCA	2 cut(s)	1990, 2926
FblI	GTMKAC	6 cut(s)	694, 961, 1189, 1255, 1670, 3315
FokI	GGATG	8 cut(s)	31, 536, 740, 1047, 1252, 2182, 2446, 2503
FriOI	GRGCYC	4 cut(s)	1245, 1284, 2422, 2891
FspBI	CTAG	7 cut(s)	222, 651, 977, 2298, 2363, 3063, 3294
GlaI	GCGC	2 cut(s)	2042, 2534
GsaI	CCCAGC	2 cut(s)	1734, 2541
HaeII	RGCGCY	2 cut(s)	2044, 2536
HaeIII	GGCC	8 cut(s)	23, 271, 1243, 1282, 1662, 1695, 1860, 2108
HapII	CCGG	6 cut(s)	42, 47, 234, 1311, 1735, 3247
HhaI	GCGC	2 cut(s)	2043, 2535
Hin1I	GRCGYC	1 cut(s)	2533
Hin6I	GCGC	2 cut(s)	2041, 2533
HinP1I	GCGC	2 cut(s)	2041, 2533
HindIII	AAGCTT	1 cut(s)	1067
HpaII	CCGG	6 cut(s)	42, 47, 234, 1311, 1735, 3247
HphI	GGTGA	9 cut(s)	527, 806, 1127, 1160, 1178, 1343, 1507, 2580, 2859
HpyCH4III	ACNGT	7 cut(s)	701, 1420, 1496, 1642, 2136, 2939, 3231
HpyCH4IV	ACGT	5 cut(s)	1665, 2338, 2548, 2585, 3054
HpySE526I	ACGT	5 cut(s)	1665, 2338, 2548, 2585, 3054
Hsp92I	GRCGYC	1 cut(s)	2533
HspAI	GCGC	2 cut(s)	2041, 2533
KasI	GGCGCC	1 cut(s)	2532
Ksp22I	TGATCA	2 cut(s)	1990, 2926
LmnI	GCTCC	5 cut(s)	92, 1731, 2417, 2707, 2846
Lsp1109I	GCAGC	9 cut(s)	402, 983, 1438, 1439, 1601, 1967, 1997, 2097, 2861
LweI	GCATC	4 cut(s)	718, 787, 1066, 1069
MaeI	CTAG	7 cut(s)	222, 651, 977, 2298, 2363, 3063, 3294
MaeII	ACGT	5 cut(s)	1665, 2338, 2548, 2585, 3054
MfeI	CAATTG	4 cut(s)	1316, 2152, 2748, 2813
MflI	RGATCY	3 cut(s)	2279, 2492, 3175
MhlI	GDGCHC	6 cut(s)	1200, 1245, 1284, 2422, 2665, 2891
MlsI	TGGCCA	2 cut(s)	1662, 1695
MluNI	TGGCCA	2 cut(s)	1662, 1695
Mly113I	GGCGCC	1 cut(s)	2533
MlyI	GAGTC	4 cut(s)	170, 425, 1222, 2391
MmeI	TCCRAC	3 cut(s)	850, 2591, 2824
Mox20I	TGGCCA	2 cut(s)	1662, 1695
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	5 cut(s)	229, 877, 1511, 2471, 2503
MscI	TGGCCA	2 cut(s)	1662, 1695
MseI	TTAA	9 cut(s)	204, 371, 380, 1404, 1805, 2031, 2370, 2424, 2442
MslI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Msp20I	TGGCCA	2 cut(s)	1662, 1695
MspA1I	CMGCKG	2 cut(s)	1295, 2731
MspI	CCGG	6 cut(s)	42, 47, 234, 1311, 1735, 3247
MunI	CAATTG	4 cut(s)	1316, 2152, 2748, 2813
MvaI	CCWGG	6 cut(s)	1285, 1519, 2490, 2642, 3132, 3162
MvnI	CGCG	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	2533
NciI	CCSGG	4 cut(s)	235, 1312, 1736, 3248
NcoI	CCATGG	1 cut(s)	1861
NlaIV	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
NmeAIII	GCCGAG	1 cut(s)	2405
NmuCI	GTSAC	7 cut(s)	1214, 1331, 2097, 2147, 2243, 2586, 2799
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	3 cut(s)	971, 1262, 2952
PagI	TCATGA	1 cut(s)	784
PaqCI	CACCTGC	1 cut(s)	2744
PceI	AGGCCT	1 cut(s)	2108
PciI	ACATGT	1 cut(s)	1258
PcsI	WCGNNNNNNNCGW	2 cut(s)	1420, 3196
PdmI	GAANNNNTTC	5 cut(s)	229, 877, 1511, 2471, 2503
PfeI	GAWTC	8 cut(s)	644, 896, 920, 1016, 1397, 2273, 2315, 3092
PflMI	CCANNNNNTGG	1 cut(s)	2453
PfoI	TCCNGGA	1 cut(s)	2488
PinAI	ACCGGT	1 cut(s)	41
PleI	GAGTC	4 cut(s)	169, 424, 1221, 2390
PluTI	GGCGCC	1 cut(s)	2536
PmaCI	CACGTG	1 cut(s)	1666
PmlI	CACGTG	1 cut(s)	1666
PpsI	GAGTC	4 cut(s)	169, 424, 1221, 2390
Ppu21I	YACGTR	1 cut(s)	1666
PscI	ACATGT	1 cut(s)	1258
PshAI	GACNNNNGTC	1 cut(s)	2584
PshBI	ATTAAT	1 cut(s)	380
PsiI	TTATAA	2 cut(s)	1179, 2055
Psp124BI	GAGCTC	1 cut(s)	2422
Psp6I	CCWGG	6 cut(s)	1283, 1517, 2488, 2640, 3130, 3160
PspCI	CACGTG	1 cut(s)	1666
PspFI	CCCAGC	2 cut(s)	1730, 2537
PspGI	CCWGG	6 cut(s)	1283, 1517, 2488, 2640, 3130, 3160
PspN4I	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
PspOMI	GGGCCC	2 cut(s)	1241, 1280
PspPI	GGNCC	9 cut(s)	39, 44, 1241, 1242, 1280, 1281, 2622, 2957, 3000
PsrI	GAACNNNNNNTAC	4 cut(s)	496, 528, 3007, 3039
PstI	CTGCAG	2 cut(s)	928, 1957
PstNI	CAGNNNCTG	3 cut(s)	2483, 2765, 2803
PsuI	RGATCY	3 cut(s)	2279, 2492, 3175
PvuII	CAGCTG	2 cut(s)	1295, 2731
RsaI	GTAC	6 cut(s)	110, 663, 933, 1121, 1157, 3007
RsaNI	GTAC	6 cut(s)	109, 662, 932, 1120, 1156, 3006
RseI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Rsr2I	CGGWCCG	1 cut(s)	44
RsrII	CGGWCCG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	2422
SaqAI	TTAA	9 cut(s)	204, 371, 380, 1404, 1805, 2031, 2370, 2424, 2442
Sau96I	GGNCC	9 cut(s)	39, 44, 1241, 1242, 1280, 1281, 2622, 2957, 3000
SchI	GAGTC	4 cut(s)	170, 425, 1222, 2391
SduI	GDGCHC	6 cut(s)	1200, 1245, 1284, 2422, 2665, 2891
SfaNI	GCATC	4 cut(s)	718, 787, 1066, 1069
SfcI	CTRYAG	4 cut(s)	924, 1953, 2601, 2696
SfoI	GGCGCC	1 cut(s)	2534
SinI	GGWCC	5 cut(s)	39, 44, 2622, 2957, 3000
SmiMI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
SmlI	CTYRAG	4 cut(s)	104, 1710, 2102, 3179
SmoI	CTYRAG	4 cut(s)	104, 1710, 2102, 3179
SseBI	AGGCCT	1 cut(s)	2108
SsiI	CCGC	5 cut(s)	7, 145, 713, 885, 3019
SspDI	GGCGCC	1 cut(s)	2532
SspI	AATATT	1 cut(s)	2428
SspMI	CTAG	7 cut(s)	222, 651, 977, 2298, 2363, 3063, 3294
SstI	GAGCTC	1 cut(s)	2422
StuI	AGGCCT	1 cut(s)	2108
StyI	CCWWGG	7 cut(s)	624, 772, 801, 1245, 1385, 1861, 2953
TaaI	ACNGT	7 cut(s)	701, 1420, 1496, 1642, 2136, 2939, 3231
TaiI	ACGT	5 cut(s)	1668, 2341, 2551, 2588, 3057
TaqI	TCGA	7 cut(s)	400, 936, 1461, 1487, 1740, 1899, 2683
TatI	WGTACW	2 cut(s)	661, 1155
TauI	GCSGC	2 cut(s)	716, 887
TfiI	GAWTC	8 cut(s)	644, 896, 920, 1016, 1397, 2273, 2315, 3092
Tru1I	TTAA	9 cut(s)	204, 371, 380, 1404, 1805, 2031, 2370, 2424, 2442
Tru9I	TTAA	9 cut(s)	204, 371, 380, 1404, 1805, 2031, 2370, 2424, 2442
TscAI	CASTG	8 cut(s)	324, 757, 933, 1223, 1423, 2417, 2808, 3236
TseFI	GTSAC	7 cut(s)	1214, 1331, 2097, 2147, 2243, 2586, 2799
TseI	GCWGC	9 cut(s)	390, 971, 1427, 1451, 1589, 1955, 2010, 2085, 2849
Tsp45I	GTSAC	7 cut(s)	1214, 1331, 2097, 2147, 2243, 2586, 2799
TspGWI	ACGGA	5 cut(s)	26, 126, 484, 1215, 2197
TspRI	CASTG	8 cut(s)	324, 757, 933, 1223, 1423, 2417, 2808, 3236
Van91I	CCANNNNNTGG	1 cut(s)	2453
VpaK11BI	GGWCC	5 cut(s)	39, 44, 2622, 2957, 3000
VspI	ATTAAT	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	2639
XapI	RAATTY	5 cut(s)	432, 487, 1773, 2366, 3046
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	3 cut(s)	971, 1262, 2952
XmiI	GTMKAC	6 cut(s)	694, 961, 1189, 1255, 1670, 3315
XmnI	GAANNNNTTC	5 cut(s)	229, 877, 1511, 2471, 2503
XspI	CTAG	7 cut(s)	222, 651, 977, 2298, 2363, 3063, 3294
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.