Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

22445239 .. 22454458

Gene Structure 9220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1167700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGTCGCGGACCGATAGGATGGGTTCGGATCTTAGCAGGACCGGCCCCGTTGAAAGAGACATCGAGCAGGCTATTACTGCTCTAAAGAAAGGGGCATGCTTGCTCAAGTATGGAAGAAGGGGGAAGCCAAAGTTTTGTCCATTTCGTCTTTCCAATGATGAATCCGTTCTAATATGGTTCTCTGGGAAGGAGGAAAAGCTCCTTAAGCTAAGCCATGTGTCTAGAATTATTTCTGGGCAACGCACTCCAATCTTTCAAAGGTATCCACGGCCTGAGAAGGAGTACCAGTCATTTTCTTTAATATATAGTGACAGATCACTAGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTTAGTGGCTTAAAAGCATTGATATCCCGAAGCCATCATCGAAAATGGAGAACAGAGTCAAGGAGTGATGGAATTCCATCTGAAGCAAATAGCCCTAGAACATACACGCGGAGAAGCTCTCCTCTAAATTCTCCATTTGGTAGTAACGATAGCTTACAGAAGGATAGTGCAGATCACCTTCGCCTTCATAGTCCATATGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTTTCAGATGTGATACTGTATGCTGTTCCTCCTCCCAAGGGTTTCTTCCCTTCAGATTCGGCTAGTGCTTCAGTACATTCTGTGTCATCTGGTGGCTCAGACGGTGTACCTGGGCAGATGAAGGCAATGGCAATGGATGCTTTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGAGATGTTTTCATGTGGGGAGAAGGCATAGGAGATGGTGTTGTGGGTGGTGGTTCTCACAGAGTTGGAAGCTGTTTTGGTGCAAAAATGGATTCTTTGTTGCCCAAAGCCTTAGAATCTAAAGTTGTACTTGACGTCCAAAACATTGCCTGTGGTGGTCGTCATGCTGCTTTAGTAACTAAGCAAGGGGAGATTTTTTCTTGGGGAGAGGAGTCAGGGGGCAGGCTTGGGCATGGTGTAGATGTTGACGTTTTGCAACCAAAGCTCATTGATGCACTTAGTAATATCAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACTTGTGCTGTTACCCTTTCTGGTGATCTGTACACATGGGGTGATGGAACATACAATTTTGGTCTACTTGGACATGGAAATGAAGTGAGCCATTGGGTCCCCAAAAGAGTAAATGGACCCTTGGAGGCTATACATGTCTCATCCATATCTTGTGGGCCCTGGCACACAGCAGTTGTAACATCCGCTGGGCAGTTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGCCATGGTGATCGGAAAAGTGTTTCAATTCCCAGGGAAGTAGAATCCCTAAAGGGCCTTCGCACTGTACAAGCAGCTTGTGGCGTTTGGCATACTGCTGCAGTTGTAGAAGTCATGGTTGGGAATTCAAGTGCCAGCAACTGTTCATTGGGAAAGCTGTTCACTTGGGGAGATGGTGATAACGGTAGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCCGCTCTTGTTGAACCCAATTTTTGTCGAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACAACATCTGGTCATGTCTACACAATGGGAAGTCCTGTTTATGGCCAGTTAGGAAATCCTCAAGCTGATGGAAAGCTCCCCACTCGAGTTGAGGGAAAGCTCTCCAAAAGTTATGTGGAAGAGATTGCTTGTGGTACCTATCATGTTGCAGTTTTAACTTCAAGACCTGAAGTGTATACTTGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAATATAGATGACCGGAACTCCCCAACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCCAGAGTATTGCTTGCGGTGCTAATTTTACTGCAGTTATTTGCCTTCATAAATGGGTTTCAGGAGTTGATCAGTCAATGTGTTCGGGTTGCCGGCTTCCTTTTAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGGCTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAATCCCTCAAGGTTTCCATGGCCCCAAATCCCAGCAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTGAGAAAAGCTGCTGAAACTGGCACTTCATCCCAGACCTCTGTAAGCAGAAGAGGAAGTATCAATCAGGGGTCAAATGAGCTTATTGATAAAGATGATAAGTTGGACTCCAGATCTCGGGTGCAACTTGCCAGGTTTTCTTCAATGGAATCTCTGAAGCATGTGGAAACCCGTTCATCAAAGAAAAATAAGAAACTAGAATTTAACAGCAGTCGAGTGTCACCTGTTCCAAATGGAGGCTCACAGTGGGGAGCTCTTAATATTTCTAAAACTTTTAATCCAGTGTTTGGGTCATCCAAGAAGTTTTTCTCAGCTTCTGTTCCTGGATCAAGAATCATTTCTCGAGCTACATCCCCAATTTCAAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTTTGGGAGGACTCACATCGCCAAAGATTGTTGTAGATGATGCTAAAAGGACAAATGAAAGCCTTAGCCAGGAGGTTATCAAACTAAGATCACAGGTTGAAAGTCTTACTCGGAAAGCCCAACTACAAGAAGTTGAGCTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCAATTGCAGATGCGGAGACTGCAAAACGCAAAGTAGCAAAGGAAGTGATCCAGTCACTTACTGCCCAATTGAAGGACATGGCTGAACGGCTGCCTGTTGGAGCAGTGCGGAATATCAAATCACCCTCTCTAGCTTCTTCCTGGGGTTCTGATCCTTCCAATGAAGTTTCTATTCCTCCGATTGACCGATTGAACGGTCAAGTAACATTCCAAGAACCAGACTCCAATGGATCAAACAGCCAATTGCTTTCCAATGGGTCCAACACCACCAGTAACCGCAGTTCAAGTCACAACAAACAAGGACATCTAGATGTAGCAACCAGAAATGGGAACAAAATTAAAGAAAACGAATCTCATCATGAAACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATACATCACACTTACTTCCCTACCAGGAGGTGCCAAGGATATCAAGCGAGTTCGTTTCAGTCGGAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGAGCAAGAGTATATGAACAATACAATGTGCGGATGGTAGACAAGTCTAGTGTAGGCATTGGGAGCGAGGACTTGGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1110

Amino Acids

120.43

Weight (kDa)

9.16

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	22 - 128	9.5e-09	Pleckstrin homology domain
WD40_RLD	PF25390	270 - 653	1.4e-80	RCC1-like domain
RCC1	PF00415	330 - 379	1.1e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	368 - 393	2.2e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	382 - 434	4.2e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	421 - 449	8e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	438 - 486	1.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	502 - 550	3.2e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	553 - 602	1.9e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	607 - 654	7.2e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	658 - 724	1.6e-15	FYVE zinc finger
BRX_N	PF13713	920 - 954	2.1e-13	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	961 - 1029	3.2e-22	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1035 - 1090	3.3e-29	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2055
AatII	GACGTC	1 cut(s)	942
Acc65I	GGTACC	1 cut(s)	1784
AccB1I	GGYRCC	3 cut(s)	1784, 2532, 3167
AccB7I	CCANNNNNTGG	1 cut(s)	2453
AccBSI	CCGCTC	1 cut(s)	1592
AccI	GTMKAC	5 cut(s)	1189, 1668, 1826, 3138, 3285
AccII	CGCG	2 cut(s)	7, 469
AciI	CCGC	9 cut(s)	7, 469, 1308, 1590, 1938, 2756, 2851, 3019, 3277
AclWI	GGATC	5 cut(s)	36, 2500, 2785, 2888, 2980
AcoI	YGGCCR	1 cut(s)	1693
AcsI	RAATTY	4 cut(s)	432, 487, 1477, 2366
AcuI	CTGAAG	6 cut(s)	462, 627, 645, 1839, 2342, 2750
AcyI	GRCGYC	2 cut(s)	939, 2533
AfaI	GTAC	8 cut(s)	284, 666, 699, 933, 1121, 1157, 1422, 1786
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	1258
AjnI	CCWGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
AjuI	GAANNNNNNNTTGG	6 cut(s)	620, 652, 1455, 1487, 2456, 2488
Alw21I	GWGCWC	1 cut(s)	2422
Alw26I	GTCTC	3 cut(s)	51, 1267, 2753
AlwI	GGATC	5 cut(s)	36, 2500, 2785, 2888, 2980
AlwNI	CAGNNNCTG	2 cut(s)	1494, 2483
Ama87I	CYCGRG	3 cut(s)	1734, 2283, 2508
AoxI	GGCC	7 cut(s)	43, 269, 1280, 1354, 1408, 1693, 2115
ApaI	GGGCCC	1 cut(s)	1284
ApeKI	GCWGC	6 cut(s)	971, 1427, 1451, 2085, 2177, 2833
ApoI	RAATTY	4 cut(s)	432, 487, 1477, 2366
Asp700I	GAANNNNTTC	4 cut(s)	165, 229, 2471, 2503
Asp718I	GGTACC	1 cut(s)	1784
AspLEI	GCGC	1 cut(s)	2535
AvaI	CYCGRG	3 cut(s)	1734, 2283, 2508
AvaII	GGWCC	5 cut(s)	9, 39, 1222, 1241, 3000
BaeGI	GKGCMC	1 cut(s)	1284
BalI	TGGCCA	1 cut(s)	1695
BanI	GGYRCC	3 cut(s)	1784, 2532, 3167
BanII	GRGCYC	2 cut(s)	1284, 2422
Bbv12I	GWGCWC	1 cut(s)	2422
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	6 cut(s)	958, 1438, 1439, 2097, 2164, 2820
BceAI	ACGGC	2 cut(s)	284, 2846
BciT130I	CCWGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	1990
BcoDI	GTCTC	3 cut(s)	51, 1267, 2753
BfaI	CTAG	8 cut(s)	222, 320, 456, 654, 2363, 2873, 3050, 3294
BfmI	CTRYAG	2 cut(s)	1452, 1953
BfoI	RGCGCY	1 cut(s)	2536
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	2279
BisI	GCNGC	7 cut(s)	972, 1428, 1452, 1590, 2086, 2178, 2834
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	7 cut(s)	973, 1429, 1453, 1591, 2087, 2179, 2835
Bme1390I	CCNGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
Bme18I	GGWCC	5 cut(s)	9, 39, 1222, 1241, 3000
BmeT110I	CYCGRG	3 cut(s)	1734, 2283, 2508
BmrFI	CCNGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
BmsI	GCATC	5 cut(s)	718, 787, 1066, 2599, 2743
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	1 cut(s)	2260
Bpu10I	CCTNAGC	2 cut(s)	351, 2633
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	89, 1695, 2087
BsaHI	GRCGYC	2 cut(s)	939, 2533
BsaWI	WCCGGW	1 cut(s)	1878
BsaXI	ACNNNNNCTCC	8 cut(s)	272, 302, 828, 858, 1868, 1898, 2548, 2578
Bse118I	RCCGGY	2 cut(s)	41, 2013
Bse1I	ACTGG	7 cut(s)	286, 750, 1696, 2191, 2447, 2794, 3012
Bse3DI	GCAATG	3 cut(s)	723, 729, 948
BseBI	CCWGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
BseGI	GGATG	8 cut(s)	24, 733, 1265, 1304, 2195, 2459, 2516, 3285
BseMI	GCAATG	3 cut(s)	723, 729, 948
BseMII	CTCAG	5 cut(s)	264, 342, 702, 2159, 2490
BseNI	ACTGG	7 cut(s)	286, 750, 1696, 2191, 2447, 2794, 3012
BseRI	GAGGAG	3 cut(s)	471, 612, 1028
BseSI	GKGCMC	1 cut(s)	1284
BseXI	GCAGC	6 cut(s)	958, 1438, 1439, 2097, 2164, 2820
BseYI	CCCAGC	3 cut(s)	1310, 2126, 2537
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	2 cut(s)	7, 469
BshFI	GGCC	7 cut(s)	45, 271, 1282, 1356, 1410, 1695, 2117
BshNI	GGYRCC	3 cut(s)	1784, 2532, 3167
BsiHKAI	GWGCWC	1 cut(s)	2422
BsiHKCI	CYCGRG	3 cut(s)	1734, 2283, 2508
BsiSI	CCGG	3 cut(s)	42, 1879, 2014
BslFI	GGGAC	1 cut(s)	1208
BsmAI	GTCTC	3 cut(s)	51, 1267, 2753
BsmFI	GGGAC	1 cut(s)	1208
BsnI	GGCC	7 cut(s)	45, 271, 1282, 1356, 1410, 1695, 2117
BsoBI	CYCGRG	3 cut(s)	1734, 2283, 2508
Bsp120I	GGGCCC	1 cut(s)	1280
Bsp1286I	GDGCHC	2 cut(s)	1284, 2422
Bsp1407I	TGTACA	2 cut(s)	1155, 1420
Bsp1720I	GCTNAGC	1 cut(s)	209
Bsp19I	CCATGG	2 cut(s)	1357, 2112
BspACI	CCGC	9 cut(s)	7, 469, 1308, 1590, 1938, 2756, 2851, 3019, 3277
BspANI	GGCC	7 cut(s)	45, 271, 1282, 1356, 1410, 1695, 2117
BspCNI	CTCAG	5 cut(s)	265, 343, 701, 2160, 2489
BspFNI	CGCG	2 cut(s)	7, 469
BspHI	TCATGA	2 cut(s)	784, 3100
BspMAI	CTGCAG	2 cut(s)	1456, 1957
BspPI	GGATC	5 cut(s)	36, 2500, 2785, 2888, 2980
BspT107I	GGYRCC	3 cut(s)	1784, 2532, 3167
BspTI	CTTAAG	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	1592
BsrDI	GCAATG	3 cut(s)	723, 729, 948
BsrFI	RCCGGY	2 cut(s)	41, 2013
BsrGI	TGTACA	2 cut(s)	1155, 1420
BsrI	ACTGG	7 cut(s)	286, 750, 1696, 2191, 2447, 2794, 3012
BssAI	RCCGGY	2 cut(s)	41, 2013
BssNAI	GTATAC	2 cut(s)	1827, 3139
BssNI	GRCGYC	2 cut(s)	939, 2533
BssT1I	CCWWGG	7 cut(s)	627, 772, 801, 1245, 1357, 2112, 3171
Bst1107I	GTATAC	2 cut(s)	1827, 3139
Bst2UI	CCWGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
Bst4CI	ACNGT	9 cut(s)	609, 695, 1420, 1496, 1538, 1642, 2412, 2939, 3231
Bst6I	CTCTTC	2 cut(s)	1764, 2212
BstACI	GRCGYC	2 cut(s)	939, 2533
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	2 cut(s)	1155, 1420
BstC8I	GCNNGC	8 cut(s)	69, 97, 101, 1028, 1489, 1936, 2015, 3325
BstDSI	CCRYGG	3 cut(s)	266, 1357, 2112
BstENI	CCTNNNNNAGG	1 cut(s)	2636
BstF5I	GGATG	8 cut(s)	24, 733, 1265, 1304, 2195, 2459, 2516, 3285
BstFNI	CGCG	2 cut(s)	7, 469
BstH2I	RGCGCY	1 cut(s)	2536
BstHHI	GCGC	1 cut(s)	2535
BstMAI	GTCTC	3 cut(s)	51, 1267, 2753
BstNI	CCWGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
BstNSI	RCATGY	3 cut(s)	99, 1262, 2330
BstSCI	CCNGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
BstSFI	CTRYAG	2 cut(s)	1452, 1953
BstSLI	GKGCMC	1 cut(s)	1284
BstUI	CGCG	2 cut(s)	7, 469
BstV1I	GCAGC	6 cut(s)	958, 1438, 1439, 2097, 2164, 2820
BstX2I	RGATCY	2 cut(s)	28, 2279
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	2 cut(s)	28, 2279
BstZ17I	GTATAC	2 cut(s)	1827, 3139
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	7 cut(s)	45, 271, 1282, 1356, 1410, 1695, 2117
BtgI	CCRYGG	3 cut(s)	266, 1357, 2112
BtgZI	GCGATG	1 cut(s)	2571
BtsCI	GGATG	8 cut(s)	24, 733, 1265, 1304, 2195, 2459, 2516, 3285
BtsI	GCAGTG	1 cut(s)	2853
BtsIMutI	CAGTG	6 cut(s)	757, 1416, 2417, 2454, 2853, 3236
Cac8I	GCNNGC	8 cut(s)	69, 97, 101, 1028, 1489, 1936, 2015, 3325
CaiI	CAGNNNCTG	2 cut(s)	1494, 2483
CciI	TCATGA	2 cut(s)	784, 3100
CfoI	GCGC	1 cut(s)	2535
Cfr10I	RCCGGY	2 cut(s)	41, 2013
CpoI	CGGWCCG	1 cut(s)	9
Csp6I	GTAC	8 cut(s)	283, 665, 698, 932, 1120, 1156, 1421, 1785
CspCI	CAANNNNNGTGG	2 cut(s)	1720, 1755
CspI	CGGWCCG	1 cut(s)	9
CviQI	GTAC	8 cut(s)	283, 665, 698, 932, 1120, 1156, 1421, 1785
DinI	GGCGCC	1 cut(s)	2534
DraI	TTTAAA	1 cut(s)	2032
EaeI	YGGCCR	1 cut(s)	1693
Eam1104I	CTCTTC	2 cut(s)	1764, 2212
EarI	CTCTTC	2 cut(s)	1764, 2212
Ecl136II	GAGCTC	1 cut(s)	2420
Eco130I	CCWWGG	7 cut(s)	627, 772, 801, 1245, 1357, 2112, 3171
Eco24I	GRGCYC	2 cut(s)	1284, 2422
Eco32I	GATATC	2 cut(s)	384, 3178
Eco47I	GGWCC	5 cut(s)	9, 39, 1222, 1241, 3000
Eco53kI	GAGCTC	1 cut(s)	2420
Eco57I	CTGAAG	6 cut(s)	462, 627, 645, 1839, 2342, 2750
Eco88I	CYCGRG	3 cut(s)	1734, 2283, 2508
EcoICRI	GAGCTC	1 cut(s)	2420
EcoNI	CCTNNNNNAGG	1 cut(s)	2636
EcoO109I	RGGNCCY	3 cut(s)	1222, 1281, 1408
EcoRI	GAATTC	2 cut(s)	432, 1477
EcoRII	CCWGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
EcoRV	GATATC	2 cut(s)	384, 3178
EcoT14I	CCWWGG	7 cut(s)	627, 772, 801, 1245, 1357, 2112, 3171
EcoT38I	GRGCYC	2 cut(s)	1284, 2422
EgeI	GGCGCC	1 cut(s)	2534
EheI	GGCGCC	1 cut(s)	2534
ErhI	CCWWGG	7 cut(s)	627, 772, 801, 1245, 1357, 2112, 3171
FalI	AAGNNNNNCTT	6 cut(s)	620, 652, 918, 950, 1554, 1586
FaqI	GGGAC	1 cut(s)	1208
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	1990
FblI	GTMKAC	5 cut(s)	1189, 1668, 1826, 3138, 3285
Fnu4HI	GCNGC	7 cut(s)	972, 1428, 1452, 1590, 2086, 2178, 2834
FokI	GGATG	8 cut(s)	31, 740, 1252, 1291, 2182, 2446, 2503, 3292
FriOI	GRGCYC	2 cut(s)	1284, 2422
Fsp4HI	GCNGC	7 cut(s)	972, 1428, 1452, 1590, 2086, 2178, 2834
FspBI	CTAG	8 cut(s)	222, 320, 456, 654, 2363, 2873, 3050, 3294
GlaI	GCGC	1 cut(s)	2534
GluI	GCNGC	7 cut(s)	972, 1428, 1452, 1590, 2086, 2178, 2834
GsaI	CCCAGC	3 cut(s)	1314, 2130, 2541
GsuI	CTGGAG	1 cut(s)	2260
HaeII	RGCGCY	1 cut(s)	2536
HaeIII	GGCC	7 cut(s)	45, 271, 1282, 1356, 1410, 1695, 2117
HapII	CCGG	3 cut(s)	42, 1879, 2014
HhaI	GCGC	1 cut(s)	2535
Hin1I	GRCGYC	2 cut(s)	939, 2533
Hin6I	GCGC	1 cut(s)	2533
HinP1I	GCGC	1 cut(s)	2533
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HpaII	CCGG	3 cut(s)	42, 1879, 2014
HpyCH4III	ACNGT	9 cut(s)	609, 695, 1420, 1496, 1538, 1642, 2412, 2939, 3231
HpyCH4IV	ACGT	2 cut(s)	939, 1053
HpySE526I	ACGT	2 cut(s)	939, 1053
Hsp92I	GRCGYC	2 cut(s)	939, 2533
HspAI	GCGC	1 cut(s)	2533
KasI	GGCGCC	1 cut(s)	2532
KflI	GGGWCCC	1 cut(s)	1222
KpnI	GGTACC	1 cut(s)	1788
KroI	GCCGGC	1 cut(s)	2013
KroNI	GCCGGC	1 cut(s)	2015
Ksp22I	TGATCA	1 cut(s)	1990
LmnI	GCTCC	6 cut(s)	204, 1731, 1841, 2417, 2843, 3309
Lsp1109I	GCAGC	6 cut(s)	958, 1438, 1439, 2097, 2164, 2820
LweI	GCATC	5 cut(s)	718, 787, 1066, 2599, 2743
MaeI	CTAG	8 cut(s)	222, 320, 456, 654, 2363, 2873, 3050, 3294
MaeII	ACGT	2 cut(s)	939, 1053
MbiI	CCGCTC	1 cut(s)	1592
MboII	GAAGA	6 cut(s)	126, 628, 1781, 2229, 2298, 2871
MfeI	CAATTG	3 cut(s)	2745, 2810, 2984
MflI	RGATCY	2 cut(s)	28, 2279
MhlI	GDGCHC	2 cut(s)	1284, 2422
MlsI	TGGCCA	1 cut(s)	1695
MluNI	TGGCCA	1 cut(s)	1695
Mly113I	GGCGCC	1 cut(s)	2533
MlyI	GAGTC	5 cut(s)	425, 1025, 2267, 2574, 2957
MmeI	TCCRAC	6 cut(s)	850, 2250, 2591, 2821, 3027, 3179
Mox20I	TGGCCA	1 cut(s)	1695
MroNI	GCCGGC	1 cut(s)	2013
MroXI	GAANNNNTTC	4 cut(s)	165, 229, 2471, 2503
MscI	TGGCCA	1 cut(s)	1695
MslI	CAYNNNNRTG	4 cut(s)	789, 1128, 1203, 3051
Msp20I	TGGCCA	1 cut(s)	1695
MspA1I	CMGCKG	2 cut(s)	1310, 2728
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	42, 1879, 2014
MspR9I	CCNGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
MunI	CAATTG	3 cut(s)	2745, 2810, 2984
MvaI	CCWGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
MvnI	CGCG	2 cut(s)	7, 469
NaeI	GCCGGC	1 cut(s)	2015
NarI	GGCGCC	1 cut(s)	2533
NcoI	CCATGG	2 cut(s)	1357, 2112
NdeI	CATATG	1 cut(s)	556
NgoMIV	GCCGGC	1 cut(s)	2013
NmuCI	GTSAC	5 cut(s)	308, 1553, 2385, 2796, 3029
NspI	RCATGY	3 cut(s)	99, 1262, 2330
PaeI	GCATGC	1 cut(s)	99
PaeR7I	CTCGAG	2 cut(s)	1734, 2508
PagI	TCATGA	2 cut(s)	784, 3100
PasI	CCCWGGG	1 cut(s)	1386
PciI	ACATGT	1 cut(s)	1258
PdiI	GCCGGC	1 cut(s)	2015
PdmI	GAANNNNTTC	4 cut(s)	165, 229, 2471, 2503
PfeI	GAWTC	8 cut(s)	161, 647, 896, 920, 1397, 2315, 2499, 3092
PflMI	CCANNNNNTGG	1 cut(s)	2453
PfoI	TCCNGGA	1 cut(s)	2488
PkrI	GCNGC	7 cut(s)	973, 1429, 1453, 1591, 2087, 2179, 2835
PleI	GAGTC	5 cut(s)	424, 1024, 2267, 2574, 2957
PluTI	GGCGCC	1 cut(s)	2536
PpsI	GAGTC	5 cut(s)	424, 1024, 2267, 2574, 2957
PpuMI	RGGWCCY	1 cut(s)	1222
PscI	ACATGT	1 cut(s)	1258
PsiI	TTATAA	1 cut(s)	2055
Psp124BI	GAGCTC	1 cut(s)	2422
Psp5II	RGGWCCY	1 cut(s)	1222
Psp6I	CCWGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
PspFI	CCCAGC	3 cut(s)	1310, 2126, 2537
PspGI	CCWGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
PspOMI	GGGCCC	1 cut(s)	1280
PspPPI	RGGWCCY	1 cut(s)	1222
PspXI	VCTCGAGB	1 cut(s)	1734
PsrI	GAACNNNNNNTAC	2 cut(s)	3007, 3039
PstI	CTGCAG	2 cut(s)	1456, 1957
PstNI	CAGNNNCTG	2 cut(s)	1494, 2483
PsuI	RGATCY	2 cut(s)	28, 2279
PvuII	CAGCTG	1 cut(s)	2728
RsaI	GTAC	8 cut(s)	284, 666, 699, 933, 1121, 1157, 1422, 1786
RsaNI	GTAC	8 cut(s)	283, 665, 698, 932, 1120, 1156, 1421, 1785
RseI	CAYNNNNRTG	4 cut(s)	789, 1128, 1203, 3051
Rsr2I	CGGWCCG	1 cut(s)	9
RsrII	CGGWCCG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	2422
SatI	GCNGC	7 cut(s)	972, 1428, 1452, 1590, 2086, 2178, 2834
SchI	GAGTC	5 cut(s)	425, 1025, 2267, 2574, 2957
ScrFI	CCNGG	9 cut(s)	702, 1285, 1387, 2299, 2490, 2639, 2884, 3132, 3162
SduI	GDGCHC	2 cut(s)	1284, 2422
SfaNI	GCATC	5 cut(s)	718, 787, 1066, 2599, 2743
SfcI	CTRYAG	2 cut(s)	1452, 1953
SfoI	GGCGCC	1 cut(s)	2534
Sfr274I	CTCGAG	2 cut(s)	1734, 2508
SinI	GGWCC	5 cut(s)	9, 39, 1222, 1241, 3000
SlaI	CTCGAG	2 cut(s)	1734, 2508
SmiMI	CAYNNNNRTG	4 cut(s)	789, 1128, 1203, 3051
SmlI	CTYRAG	6 cut(s)	104, 203, 1710, 1734, 2102, 2508
SmoI	CTYRAG	6 cut(s)	104, 203, 1710, 1734, 2102, 2508
SphI	GCATGC	1 cut(s)	99
SsiI	CCGC	9 cut(s)	7, 469, 1308, 1590, 1938, 2756, 2851, 3019, 3277
SspDI	GGCGCC	1 cut(s)	2532
SspI	AATATT	1 cut(s)	2428
SspMI	CTAG	8 cut(s)	222, 320, 456, 654, 2363, 2873, 3050, 3294
SstI	GAGCTC	1 cut(s)	2422
StyD4I	CCNGG	9 cut(s)	700, 1283, 1385, 2297, 2488, 2637, 2882, 3130, 3160
StyI	CCWWGG	7 cut(s)	627, 772, 801, 1245, 1357, 2112, 3171
TaaI	ACNGT	9 cut(s)	609, 695, 1420, 1496, 1538, 1642, 2412, 2939, 3231
TaiI	ACGT	2 cut(s)	942, 1056
TaqI	TCGA	6 cut(s)	63, 400, 1615, 1735, 2380, 2509
TaqII	GACCGA	2 cut(s)	26, 2943
TatI	WGTACW	4 cut(s)	664, 931, 1155, 1420
TauI	GCSGC	1 cut(s)	1592
TfiI	GAWTC	8 cut(s)	161, 647, 896, 920, 1397, 2315, 2499, 3092
TscAI	CASTG	6 cut(s)	757, 1423, 2417, 2454, 2853, 3236
TseFI	GTSAC	5 cut(s)	308, 1553, 2385, 2796, 3029
TseI	GCWGC	6 cut(s)	971, 1427, 1451, 2085, 2177, 2833
Tsp45I	GTSAC	5 cut(s)	308, 1553, 2385, 2796, 3029
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	6 cut(s)	757, 1423, 2417, 2454, 2853, 3236
Van91I	CCANNNNNTGG	1 cut(s)	2453
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	5 cut(s)	9, 39, 1222, 1241, 3000
XagI	CCTNNNNNAGG	1 cut(s)	2636
XapI	RAATTY	4 cut(s)	432, 487, 1477, 2366
XbaI	TCTAGA	2 cut(s)	221, 3049
XceI	RCATGY	3 cut(s)	99, 1262, 2330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1762
XhoI	CTCGAG	2 cut(s)	1734, 2508
XmiI	GTMKAC	5 cut(s)	1189, 1668, 1826, 3138, 3285
XmnI	GAANNNNTTC	4 cut(s)	165, 229, 2471, 2503
XspI	CTAG	8 cut(s)	222, 320, 456, 654, 2363, 2873, 3050, 3294
ZraI	GACGTC	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.