Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

47840167 .. 47848886

Gene Structure 8720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG372500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGTCGCGGACGGAGAGGATGGCTTCTGATCTTAGCAGGACCACCGGTCCGGTCGAAAGAGACATCGAGCAGGCCATTACTGCTTTAAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCCATTCTAATATGGTTCTCAGGGAAGGAGGAAAAACAACTTAAACTAAGCCATGTTTCTAGAATTATATCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATATATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAGGCAATGACAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTATAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACTCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACCTGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCGTTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATTATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGATCAAGTGACAGCATTGATAAAGACGATAAAATGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTACCCACTACTGTTCTTTTTATTTTTCAACAACTAGAGCACAGGTGTAGGGTCTCTTGTAAATTTAGTTGTTTATTTTGTCTGTTTCCCTTCACCAATTTTAATTTTGATGAAATAAAATTTAGTTTGTGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

934

Amino Acids

101.33

Weight (kDa)

9.16

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	23 - 129	2.8e-09	Pleckstrin homology domain
WD40_RLD	PF25390	270 - 653	7.6e-80	RCC1-like domain
RCC1	PF00415	330 - 379	5.6e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	368 - 393	8.3e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	382 - 434	4.4e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	421 - 449	6.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	438 - 486	1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	502 - 550	5.8e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	538 - 566	6.2e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	553 - 602	1.3e-07	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	607 - 654	3.5e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	658 - 724	1.4e-15	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2055
AatII	GACGTC	1 cut(s)	942
Acc65I	GGTACC	1 cut(s)	2668
AccB1I	GGYRCC	4 cut(s)	1784, 2116, 2532, 2668
AccB7I	CCANNNNNTGG	1 cut(s)	2453
AccI	GTMKAC	3 cut(s)	1189, 1255, 1668
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	7, 148, 2014
AclWI	GGATC	4 cut(s)	1595, 2245, 2487, 2500
AcoI	YGGCCR	2 cut(s)	1660, 1693
AcsI	RAATTY	6 cut(s)	435, 490, 1773, 2366, 2729, 2786
AcuI	CTGAAG	3 cut(s)	465, 627, 2342
AcyI	GRCGYC	2 cut(s)	939, 2533
AfaI	GTAC	7 cut(s)	113, 666, 699, 933, 1121, 1157, 2670
AflII	CTTAAG	1 cut(s)	1403
AflIII	ACRYGT	2 cut(s)	1258, 2336
AgeI	ACCGGT	1 cut(s)	44
AhdI	GACNNNNNGTC	1 cut(s)	45
AjnI	CCWGG	6 cut(s)	1283, 1385, 1517, 1829, 2488, 2640
AjuI	GAANNNNNNNTTGG	8 cut(s)	620, 652, 1455, 1487, 2389, 2421, 2456, 2488
Alw21I	GWGCWC	4 cut(s)	2422, 2665, 2709, 2801
Alw26I	GTCTC	4 cut(s)	54, 1267, 2389, 2725
Alw44I	GTGCAC	1 cut(s)	2797
AlwI	GGATC	4 cut(s)	1595, 2245, 2487, 2500
AoxI	GGCC	5 cut(s)	72, 272, 1241, 1660, 1693
ApaI	GGGCCC	1 cut(s)	1245
ApaLI	GTGCAC	1 cut(s)	2797
ApeKI	GCWGC	9 cut(s)	393, 884, 971, 1427, 1451, 1589, 1955, 2010, 2085
ApoI	RAATTY	6 cut(s)	435, 490, 1773, 2366, 2729, 2786
AseI	ATTAAT	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	44
Asp700I	GAANNNNTTC	2 cut(s)	2471, 2503
Asp718I	GGTACC	1 cut(s)	2668
AspLEI	GCGC	1 cut(s)	2535
AspS9I	GGNCC	6 cut(s)	39, 47, 1241, 1242, 1280, 2622
AsuC2I	CCSGG	2 cut(s)	238, 1312
AvaII	GGWCC	4 cut(s)	39, 47, 1280, 2622
AxyI	CCTNAGG	1 cut(s)	802
BaeGI	GKGCMC	3 cut(s)	1200, 1245, 2801
BalI	TGGCCA	2 cut(s)	1662, 1695
BamHI	GGATCC	1 cut(s)	2492
BanI	GGYRCC	4 cut(s)	1784, 2116, 2532, 2668
BanII	GRGCYC	2 cut(s)	1245, 2422
BauI	CACGAG	1 cut(s)	2283
BbsI	GAAGAC	2 cut(s)	1403, 2196
Bbv12I	GWGCWC	4 cut(s)	2422, 2665, 2709, 2801
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	9 cut(s)	405, 871, 983, 1438, 1439, 1601, 1967, 1997, 2097
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	6 cut(s)	1285, 1387, 1519, 1831, 2490, 2642
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	1990
BcnI	CCSGG	2 cut(s)	238, 1312
BcoDI	GTCTC	4 cut(s)	54, 1267, 2389, 2725
BfmI	CTRYAG	4 cut(s)	924, 1953, 2178, 2601
BfoI	RGCGCY	1 cut(s)	2536
BfrI	CTTAAG	1 cut(s)	1403
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	2279
Bme1390I	CCNGG	8 cut(s)	238, 1285, 1312, 1387, 1519, 1831, 2490, 2642
Bme18I	GGWCC	4 cut(s)	39, 47, 1280, 2622
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	6 cut(s)	39, 47, 1241, 1242, 1280, 2622
BmiI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 2670
BmrFI	CCNGG	8 cut(s)	238, 1285, 1312, 1387, 1519, 1831, 2490, 2642
BmrI	ACTGGG	3 cut(s)	1228, 1725, 2194
BmsI	GCATC	4 cut(s)	718, 787, 1066, 1069
BmuI	ACTGGG	3 cut(s)	1228, 1725, 2194
BpiI	GAAGAC	2 cut(s)	1403, 2196
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpmI	CTGGAG	1 cut(s)	2004
Bpu10I	CCTNAGC	2 cut(s)	354, 2636
BpuEI	CTTGAG	3 cut(s)	92, 1695, 2087
BpuMI	CCSGG	2 cut(s)	238, 1312
BsaHI	GRCGYC	2 cut(s)	939, 2533
BsaI	GGTCTC	1 cut(s)	2725
BsaJI	CCNNGG	9 cut(s)	269, 627, 772, 1245, 1283, 1385, 1386, 1518, 1830
BsaWI	WCCGGW	3 cut(s)	44, 49, 1145
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 828, 858, 2548, 2578
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	7 cut(s)	327, 750, 1223, 1696, 1731, 2200, 2447
Bse21I	CCTNAGG	1 cut(s)	802
Bse3DI	GCAATG	2 cut(s)	723, 948
BseBI	CCWGG	6 cut(s)	1285, 1387, 1519, 1831, 2490, 2642
BseDI	CCNNGG	9 cut(s)	269, 627, 772, 1245, 1283, 1385, 1386, 1518, 1830
BseGI	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BseMI	GCAATG	2 cut(s)	723, 948
BseMII	CTCAG	5 cut(s)	198, 345, 1096, 1809, 2159
BseNI	ACTGG	7 cut(s)	327, 750, 1223, 1696, 1731, 2200, 2447
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	3 cut(s)	1200, 1245, 2801
BseXI	GCAGC	9 cut(s)	405, 871, 983, 1438, 1439, 1601, 1967, 1997, 2097
BseYI	CCCAGC	1 cut(s)	2537
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BshNI	GGYRCC	4 cut(s)	1784, 2116, 2532, 2668
BshTI	ACCGGT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	4 cut(s)	2422, 2665, 2709, 2801
BsiSI	CCGG	5 cut(s)	45, 50, 237, 1146, 1311
BslFI	GGGAC	2 cut(s)	605, 1368
BsmAI	GTCTC	4 cut(s)	54, 1267, 2389, 2725
BsmFI	GGGAC	2 cut(s)	605, 1368
BsnI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
Bso31I	GGTCTC	1 cut(s)	2725
Bsp120I	GGGCCC	1 cut(s)	1241
Bsp1286I	GDGCHC	6 cut(s)	1200, 1245, 2422, 2665, 2709, 2801
Bsp1407I	TGTACA	2 cut(s)	697, 1155
BspACI	CCGC	3 cut(s)	7, 148, 2014
BspANI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BspCNI	CTCAG	5 cut(s)	197, 346, 1095, 1810, 2160
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 2670
BspMAI	CTGCAG	2 cut(s)	928, 1957
BspPI	GGATC	4 cut(s)	1595, 2245, 2487, 2500
BspQI	GCTCTTC	1 cut(s)	1757
BspT107I	GGYRCC	4 cut(s)	1784, 2116, 2532, 2668
BspTI	CTTAAG	1 cut(s)	1403
BspTNI	GGTCTC	1 cut(s)	2725
BsrDI	GCAATG	2 cut(s)	723, 948
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	697, 1155
BsrI	ACTGG	7 cut(s)	327, 750, 1223, 1696, 1731, 2200, 2447
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	9 cut(s)	269, 627, 772, 1245, 1283, 1385, 1386, 1518, 1830
BssNAI	GTATAC	2 cut(s)	1256, 1669
BssNI	GRCGYC	2 cut(s)	939, 2533
BssSI	CACGAG	1 cut(s)	2283
BssT1I	CCWWGG	3 cut(s)	627, 772, 1245
Bst1107I	GTATAC	2 cut(s)	1256, 1669
Bst2BI	CACGAG	1 cut(s)	2283
Bst2UI	CCWGG	6 cut(s)	1285, 1387, 1519, 1831, 2490, 2642
Bst4CI	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 2680
Bst6I	CTCTTC	2 cut(s)	1757, 2212
BstACI	GRCGYC	2 cut(s)	939, 2533
BstAFI	CTTAAG	1 cut(s)	1403
BstAUI	TGTACA	2 cut(s)	697, 1155
BstC8I	GCNNGC	3 cut(s)	72, 1028, 1425
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	2639
BstF5I	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	2536
BstHHI	GCGC	1 cut(s)	2535
BstMAI	GTCTC	4 cut(s)	54, 1267, 2389, 2725
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 147, 768, 1066, 1940, 2114
BstNI	CCWGG	6 cut(s)	1285, 1387, 1519, 1831, 2490, 2642
BstNSI	RCATGY	2 cut(s)	971, 1262
BstSCI	CCNGG	8 cut(s)	236, 1283, 1310, 1385, 1517, 1829, 2488, 2640
BstSFI	CTRYAG	4 cut(s)	924, 1953, 2178, 2601
BstSLI	GKGCMC	3 cut(s)	1200, 1245, 2801
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	9 cut(s)	405, 871, 983, 1438, 1439, 1601, 1967, 1997, 2097
BstV2I	GAAGAC	2 cut(s)	1403, 2196
BstX2I	RGATCY	2 cut(s)	2279, 2492
BstXI	CCANNNNNNTGG	2 cut(s)	779, 1393
BstYI	RGATCY	2 cut(s)	2279, 2492
BstZ17I	GTATAC	2 cut(s)	1256, 1669
Bsu36I	CCTNAGG	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BtsI	GCAGTG	2 cut(s)	933, 2417
BtsIMutI	CAGTG	7 cut(s)	320, 373, 757, 933, 1216, 1416, 2417
Cac8I	GCNNGC	3 cut(s)	72, 1028, 1425
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	2535
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	6 cut(s)	39, 47, 1241, 1242, 1280, 2622
CpoI	CGGWCCG	1 cut(s)	47
Csp6I	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 2669
CspAI	ACCGGT	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	1879, 1914
CspI	CGGWCCG	1 cut(s)	47
CviQI	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 2669
DinI	GGCGCC	1 cut(s)	2534
DraI	TTTAAA	3 cut(s)	87, 375, 2032
DriI	GACNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	1660, 1693
Eam1104I	CTCTTC	2 cut(s)	1757, 2212
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	2 cut(s)	1757, 2212
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	2420
Eco130I	CCWWGG	3 cut(s)	627, 772, 1245
Eco24I	GRGCYC	2 cut(s)	1245, 2422
Eco31I	GGTCTC	1 cut(s)	2725
Eco47I	GGWCC	4 cut(s)	39, 47, 1280, 2622
Eco53kI	GAGCTC	1 cut(s)	2420
Eco57I	CTGAAG	3 cut(s)	465, 627, 2342
Eco81I	CCTNAGG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	2420
EcoNI	CCTNNNNNAGG	1 cut(s)	2639
EcoO109I	RGGNCCY	1 cut(s)	1242
EcoRI	GAATTC	3 cut(s)	435, 490, 2366
EcoRII	CCWGG	6 cut(s)	1283, 1385, 1517, 1829, 2488, 2640
EcoT14I	CCWWGG	3 cut(s)	627, 772, 1245
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	1245, 2422
EgeI	GGCGCC	1 cut(s)	2534
EheI	GGCGCC	1 cut(s)	2534
ErhI	CCWWGG	3 cut(s)	627, 772, 1245
FalI	AAGNNNNNCTT	6 cut(s)	1527, 1559, 1554, 1586, 2456, 2488
FaqI	GGGAC	2 cut(s)	605, 1368
FbaI	TGATCA	1 cut(s)	1990
FblI	GTMKAC	3 cut(s)	1189, 1255, 1668
FokI	GGATG	7 cut(s)	31, 539, 740, 1047, 2182, 2446, 2503
FriOI	GRGCYC	2 cut(s)	1245, 2422
GlaI	GCGC	1 cut(s)	2534
GsaI	CCCAGC	1 cut(s)	2541
GsuI	CTGGAG	1 cut(s)	2004
HaeII	RGCGCY	1 cut(s)	2536
HaeIII	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
HapII	CCGG	5 cut(s)	45, 50, 237, 1146, 1311
HhaI	GCGC	1 cut(s)	2535
Hin1I	GRCGYC	2 cut(s)	939, 2533
Hin6I	GCGC	1 cut(s)	2533
HinP1I	GCGC	1 cut(s)	2533
HindIII	AAGCTT	1 cut(s)	1067
HpaII	CCGG	5 cut(s)	45, 50, 237, 1146, 1311
Hpy99I	CGWCG	1 cut(s)	941
HpyCH4III	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 2680
HpyCH4IV	ACGT	2 cut(s)	939, 2338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 147, 768, 1066, 1940, 2114
HpySE526I	ACGT	2 cut(s)	939, 2338
Hsp92I	GRCGYC	2 cut(s)	939, 2533
HspAI	GCGC	1 cut(s)	2533
KasI	GGCGCC	1 cut(s)	2532
KpnI	GGTACC	1 cut(s)	2672
Ksp22I	TGATCA	1 cut(s)	1990
LguI	GCTCTTC	1 cut(s)	1757
LmnI	GCTCC	5 cut(s)	95, 426, 1731, 1841, 2417
Lsp1109I	GCAGC	9 cut(s)	405, 871, 983, 1438, 1439, 1601, 1967, 1997, 2097
LweI	GCATC	4 cut(s)	718, 787, 1066, 1069
MaeII	ACGT	2 cut(s)	939, 2338
MaeIII	GTNAC	8 cut(s)	979, 1135, 1214, 1300, 1553, 2097, 2147, 2243
MfeI	CAATTG	2 cut(s)	1316, 2152
MflI	RGATCY	2 cut(s)	2279, 2492
MhlI	GDGCHC	6 cut(s)	1200, 1245, 2422, 2665, 2709, 2801
MlsI	TGGCCA	2 cut(s)	1662, 1695
MluNI	TGGCCA	2 cut(s)	1662, 1695
Mly113I	GGCGCC	1 cut(s)	2533
MlyI	GAGTC	4 cut(s)	173, 428, 1222, 2391
MmeI	TCCRAC	2 cut(s)	850, 2591
Mox20I	TGGCCA	2 cut(s)	1662, 1695
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	2 cut(s)	2471, 2503
MscI	TGGCCA	2 cut(s)	1662, 1695
MslI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Msp20I	TGGCCA	2 cut(s)	1662, 1695
MspA1I	CMGCKG	1 cut(s)	1295
MspCI	CTTAAG	1 cut(s)	1403
MspI	CCGG	5 cut(s)	45, 50, 237, 1146, 1311
MspR9I	CCNGG	8 cut(s)	238, 1285, 1312, 1387, 1519, 1831, 2490, 2642
MunI	CAATTG	2 cut(s)	1316, 2152
MvaI	CCWGG	6 cut(s)	1285, 1387, 1519, 1831, 2490, 2642
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	80, 147, 768, 1066, 1940, 2114
NarI	GGCGCC	1 cut(s)	2533
NciI	CCSGG	2 cut(s)	238, 1312
NlaIV	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 2670
NmuCI	GTSAC	5 cut(s)	1214, 1553, 2097, 2147, 2243
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	971, 1262
PagI	TCATGA	1 cut(s)	784
PasI	CCCWGGG	1 cut(s)	1386
PciI	ACATGT	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	1757
PdmI	GAANNNNTTC	2 cut(s)	2471, 2503
PfeI	GAWTC	7 cut(s)	647, 896, 920, 1016, 1397, 2273, 2315
PflMI	CCANNNNNTGG	1 cut(s)	2453
PfoI	TCCNGGA	1 cut(s)	2488
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	4 cut(s)	172, 427, 1221, 2390
PluTI	GGCGCC	1 cut(s)	2536
PpsI	GAGTC	4 cut(s)	172, 427, 1221, 2390
PscI	ACATGT	1 cut(s)	1258
PshBI	ATTAAT	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	2055
Psp124BI	GAGCTC	1 cut(s)	2422
Psp6I	CCWGG	6 cut(s)	1283, 1385, 1517, 1829, 2488, 2640
PspFI	CCCAGC	1 cut(s)	2537
PspGI	CCWGG	6 cut(s)	1283, 1385, 1517, 1829, 2488, 2640
PspN4I	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 2670
PspOMI	GGGCCC	1 cut(s)	1241
PspPI	GGNCC	6 cut(s)	39, 47, 1241, 1242, 1280, 2622
PstI	CTGCAG	2 cut(s)	928, 1957
PsuI	RGATCY	2 cut(s)	2279, 2492
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	7 cut(s)	113, 666, 699, 933, 1121, 1157, 2670
RsaNI	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 2669
RseI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Rsr2I	CGGWCCG	1 cut(s)	47
RsrII	CGGWCCG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	2422
SapI	GCTCTTC	1 cut(s)	1757
Sau96I	GGNCC	6 cut(s)	39, 47, 1241, 1242, 1280, 2622
SchI	GAGTC	4 cut(s)	173, 428, 1222, 2391
ScrFI	CCNGG	8 cut(s)	238, 1285, 1312, 1387, 1519, 1831, 2490, 2642
SduI	GDGCHC	6 cut(s)	1200, 1245, 2422, 2665, 2709, 2801
SfaNI	GCATC	4 cut(s)	718, 787, 1066, 1069
SfcI	CTRYAG	4 cut(s)	924, 1953, 2178, 2601
SfoI	GGCGCC	1 cut(s)	2534
SinI	GGWCC	4 cut(s)	39, 47, 1280, 2622
SmiMI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
SmlI	CTYRAG	4 cut(s)	107, 1403, 1710, 2102
SmoI	CTYRAG	4 cut(s)	107, 1403, 1710, 2102
SsiI	CCGC	3 cut(s)	7, 148, 2014
SspDI	GGCGCC	1 cut(s)	2532
SspI	AATATT	1 cut(s)	2428
SstI	GAGCTC	1 cut(s)	2422
StyD4I	CCNGG	8 cut(s)	236, 1283, 1310, 1385, 1517, 1829, 2488, 2640
StyI	CCWWGG	3 cut(s)	627, 772, 1245
TaaI	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 2680
TaiI	ACGT	2 cut(s)	942, 2341
TaqI	TCGA	8 cut(s)	54, 66, 403, 936, 1487, 1599, 1740, 2380
TatI	WGTACW	3 cut(s)	664, 697, 1155
TauI	GCSGC	1 cut(s)	2016
TfiI	GAWTC	7 cut(s)	647, 896, 920, 1016, 1397, 2273, 2315
TscAI	CASTG	7 cut(s)	327, 373, 757, 933, 1223, 1423, 2417
TseFI	GTSAC	5 cut(s)	1214, 1553, 2097, 2147, 2243
TseI	GCWGC	9 cut(s)	393, 884, 971, 1427, 1451, 1589, 1955, 2010, 2085
Tsp45I	GTSAC	5 cut(s)	1214, 1553, 2097, 2147, 2243
TspDTI	ATGAA	9 cut(s)	363, 539, 725, 805, 1221, 1958, 2184, 2643, 2793
TspGWI	ACGGA	5 cut(s)	26, 129, 487, 1215, 2010
TspRI	CASTG	7 cut(s)	327, 373, 757, 933, 1223, 1423, 2417
Van91I	CCANNNNNTGG	1 cut(s)	2453
Vha464I	CTTAAG	1 cut(s)	1403
VneI	GTGCAC	1 cut(s)	2797
VpaK11BI	GGWCC	4 cut(s)	39, 47, 1280, 2622
VspI	ATTAAT	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	2639
XapI	RAATTY	6 cut(s)	435, 490, 1773, 2366, 2729, 2786
XbaI	TCTAGA	2 cut(s)	224, 2507
XceI	RCATGY	2 cut(s)	971, 1262
XmiI	GTMKAC	3 cut(s)	1189, 1255, 1668
XmnI	GAANNNNTTC	2 cut(s)	2471, 2503
ZraI	GACGTC	1 cut(s)	940
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.