Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Reverse (-)

39405263 .. 39413202

Gene Structure 7940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3003 bp

ATGATAGATTCAAGTGTTGGTGGAGATTTGAAGCTGTTCGGTACCGGCGATATGCGGCTGGATTTGGAGACGGAGTTGAGAATCGGCGACCGGCACTGTTTGGCACTGCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATATATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCGAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCAAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGAGGCTCGGAAAGTGTACACGGTCCGATGAAGGCAATGGCAGTGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCATGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCGATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGTGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCACTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGCAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCTACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCGTTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAGCTGAGAAAAGCTATTGAAACTGATTATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATAAGGCCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAGCTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGTCTTAGCCAGGAGGTTATCAAGCTAAGGGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAACAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTGCTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACAGCCAGTTGCTTTCTAATGGGTCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCAGACTTGGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGACGAGGCTGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTCAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1000

Amino Acids

107.79

Weight (kDa)

8.89

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	231 - 544	5.5e-65	RCC1-like domain
RCC1	PF00415	233 - 270	1.4e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	259 - 284	9e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	273 - 325	4.8e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	312 - 340	7.1e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	329 - 377	1.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	393 - 441	6.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	429 - 457	6.7e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	444 - 493	5.7e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	498 - 545	3.7e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	549 - 615	1.5e-15	FYVE zinc finger
BRX_N	PF13713	812 - 846	1.6e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	852 - 920	7.3e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	926 - 981	1.6e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1728
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	4 cut(s)	41, 1457, 1789, 2205
AccB7I	CCANNNNNTGG	1 cut(s)	2126
AccI	GTMKAC	5 cut(s)	862, 928, 1341, 2958, 2988
AciI	CCGC	4 cut(s)	55, 1687, 2454, 2692
AclWI	GGATC	6 cut(s)	1268, 2160, 2173, 2561, 2653, 2856
AcoI	YGGCCR	2 cut(s)	1333, 1366
AcsI	RAATTY	5 cut(s)	294, 349, 1446, 2039, 2719
AcuI	CTGAAG	3 cut(s)	324, 2015, 2851
AcyI	GRCGYC	1 cut(s)	2206
AfaI	GTAC	5 cut(s)	43, 456, 794, 830, 2680
AflII	CTTAAG	1 cut(s)	1076
AflIII	ACRYGT	2 cut(s)	931, 2009
AjnI	CCWGG	6 cut(s)	956, 1058, 1190, 2161, 2313, 2833
AjuI	GAANNNNNNNTTGG	8 cut(s)	1128, 1160, 2062, 2094, 2129, 2161, 2711, 2743
Alw21I	GWGCWC	1 cut(s)	2095
Alw26I	GTCTC	5 cut(s)	62, 940, 2062, 2429, 2771
AlwI	GGATC	6 cut(s)	1268, 2160, 2173, 2561, 2653, 2856
AlwNI	CAGNNNCTG	2 cut(s)	2438, 2476
AoxI	GGCC	5 cut(s)	131, 914, 1333, 1366, 1908
ApaI	GGGCCC	1 cut(s)	918
ApoI	RAATTY	5 cut(s)	294, 349, 1446, 2039, 2719
AseI	ATTAAT	1 cut(s)	242
Asp700I	GAANNNNTTC	3 cut(s)	35, 2144, 2176
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	2208
AspS9I	GGNCC	7 cut(s)	461, 914, 915, 953, 2295, 2630, 2673
AsuC2I	CCSGG	2 cut(s)	985, 2921
AvaII	GGWCC	5 cut(s)	461, 953, 2295, 2630, 2673
AxyI	CCTNAGG	1 cut(s)	559
BaeGI	GKGCMC	2 cut(s)	918, 2338
BalI	TGGCCA	2 cut(s)	1335, 1368
BamHI	GGATCC	1 cut(s)	2165
BanI	GGYRCC	4 cut(s)	41, 1457, 1789, 2205
BanII	GRGCYC	2 cut(s)	918, 2095
BauI	CACGAG	1 cut(s)	1956
BbsI	GAAGAC	2 cut(s)	1076, 1869
Bbv12I	GWGCWC	1 cut(s)	2095
BbvCI	CCTCAGC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	6 cut(s)	958, 1060, 1192, 2163, 2315, 2835
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	2 cut(s)	1663, 2599
BcnI	CCSGG	2 cut(s)	985, 2921
BcoDI	GTCTC	5 cut(s)	62, 940, 2062, 2429, 2771
BfaI	CTAG	7 cut(s)	1971, 2036, 2181, 2202, 2246, 2736, 2967
BfmI	CTRYAG	4 cut(s)	681, 1626, 2274, 2369
BfoI	RGCGCY	1 cut(s)	2209
BfrI	CTTAAG	1 cut(s)	1076
BfuI	GTATCC	1 cut(s)	135
BglII	AGATCT	1 cut(s)	1952
Bme1390I	CCNGG	8 cut(s)	958, 985, 1060, 1192, 2163, 2315, 2835, 2921
Bme18I	GGWCC	5 cut(s)	461, 953, 2295, 2630, 2673
BmgT120I	GGNCC	7 cut(s)	461, 914, 915, 953, 2295, 2630, 2673
BmiI	GGNNCC	9 cut(s)	43, 897, 916, 955, 1459, 1791, 2167, 2207, 2674
BmrFI	CCNGG	8 cut(s)	958, 985, 1060, 1192, 2163, 2315, 2835, 2921
BmrI	ACTGGG	3 cut(s)	901, 1398, 1867
BmsI	GCATC	6 cut(s)	475, 544, 739, 742, 2401, 2419
BmuI	ACTGGG	3 cut(s)	901, 1398, 1867
BpiI	GAAGAC	2 cut(s)	1076, 1869
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	1677
Bpu10I	CCTNAGC	2 cut(s)	213, 2330
BpuEI	CTTGAG	4 cut(s)	1368, 1760, 1897, 2837
BpuMI	CCSGG	2 cut(s)	985, 2921
Bsa29I	ATCGAT	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	2206
BsaJI	CCNNGG	8 cut(s)	128, 529, 918, 956, 1058, 1059, 1191, 2626
BsaWI	WCCGGW	1 cut(s)	818
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 134, 164, 585, 615, 2221, 2251
Bse118I	RCCGGY	2 cut(s)	44, 90
Bse21I	CCTNAGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	6 cut(s)	958, 1060, 1192, 2163, 2315, 2835
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	8 cut(s)	128, 529, 918, 956, 1058, 1059, 1191, 2626
BseGI	GGATG	6 cut(s)	391, 490, 733, 1868, 2132, 2189
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	4 cut(s)	204, 769, 1482, 1832
BseRI	GAGGAG	2 cut(s)	298, 333
BseSI	GKGCMC	2 cut(s)	918, 2338
BseYI	CCCAGC	1 cut(s)	2210
BsgI	GTGCAG	3 cut(s)	411, 1982, 2466
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	5 cut(s)	133, 916, 1335, 1368, 1910
BshNI	GGYRCC	4 cut(s)	41, 1457, 1789, 2205
BshVI	ATCGAT	1 cut(s)	941
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	2095
BsiSI	CCGG	5 cut(s)	45, 91, 819, 984, 2920
BslFI	GGGAC	1 cut(s)	1041
BsmAI	GTCTC	5 cut(s)	62, 940, 2062, 2429, 2771
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	1041
BsnI	GGCC	5 cut(s)	133, 916, 1335, 1368, 1910
Bsp120I	GGGCCC	1 cut(s)	914
Bsp1286I	GDGCHC	3 cut(s)	918, 2095, 2338
Bsp1407I	TGTACA	2 cut(s)	454, 828
BspACI	CCGC	4 cut(s)	55, 1687, 2454, 2692
BspANI	GGCC	5 cut(s)	133, 916, 1335, 1368, 1910
BspCNI	CTCAG	4 cut(s)	205, 768, 1483, 1833
BspDI	ATCGAT	1 cut(s)	941
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	9 cut(s)	43, 897, 916, 955, 1459, 1791, 2167, 2207, 2674
BspMAI	CTGCAG	2 cut(s)	685, 1630
BspPI	GGATC	6 cut(s)	1268, 2160, 2173, 2561, 2653, 2856
BspQI	GCTCTTC	1 cut(s)	1430
BspT107I	GGYRCC	4 cut(s)	41, 1457, 1789, 2205
BspTI	CTTAAG	1 cut(s)	1076
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	2 cut(s)	44, 90
BsrGI	TGTACA	2 cut(s)	454, 828
BssAI	RCCGGY	2 cut(s)	44, 90
BssECI	CCNNGG	8 cut(s)	128, 529, 918, 956, 1058, 1059, 1191, 2626
BssNAI	GTATAC	2 cut(s)	929, 1342
BssNI	GRCGYC	1 cut(s)	2206
BssSI	CACGAG	1 cut(s)	1956
BssT1I	CCWWGG	3 cut(s)	529, 918, 2626
Bst1107I	GTATAC	2 cut(s)	929, 1342
Bst2BI	CACGAG	1 cut(s)	1956
Bst2UI	CCWGG	6 cut(s)	958, 1060, 1192, 2163, 2315, 2835
Bst4CI	ACNGT	7 cut(s)	98, 461, 1093, 1169, 1315, 1809, 2904
Bst6I	CTCTTC	2 cut(s)	1430, 1885
BstACI	GRCGYC	1 cut(s)	2206
BstAFI	CTTAAG	1 cut(s)	1076
BstAPI	GCANNNNNTGC	2 cut(s)	485, 2438
BstAUI	TGTACA	2 cut(s)	454, 828
BstC8I	GCNNGC	4 cut(s)	701, 1098, 1397, 1968
BstDEI	CTNAG	7 cut(s)	213, 559, 755, 1491, 1841, 2309, 2330
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	6 cut(s)	391, 490, 733, 1868, 2132, 2189
BstH2I	RGCGCY	1 cut(s)	2209
BstHHI	GCGC	1 cut(s)	2208
BstMAI	GTCTC	5 cut(s)	62, 940, 2062, 2429, 2771
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	6 cut(s)	485, 525, 739, 1613, 1787, 2438
BstNI	CCWGG	6 cut(s)	958, 1060, 1192, 2163, 2315, 2835
BstNSI	RCATGY	2 cut(s)	935, 2625
BstSCI	CCNGG	8 cut(s)	956, 983, 1058, 1190, 2161, 2313, 2833, 2919
BstSFI	CTRYAG	4 cut(s)	681, 1626, 2274, 2369
BstSLI	GKGCMC	2 cut(s)	918, 2338
BstV2I	GAAGAC	2 cut(s)	1076, 1869
BstX2I	RGATCY	3 cut(s)	1952, 2165, 2848
BstXI	CCANNNNNNTGG	2 cut(s)	536, 1066
BstYI	RGATCY	3 cut(s)	1952, 2165, 2848
BstZ17I	GTATAC	2 cut(s)	929, 1342
Bsu15I	ATCGAT	1 cut(s)	941
Bsu36I	CCTNAGG	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	5 cut(s)	133, 916, 1335, 1368, 1910
BsuTUI	ATCGAT	1 cut(s)	941
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	391, 490, 733, 1868, 2132, 2189
BtsI	GCAGTG	4 cut(s)	104, 486, 690, 2090
Cac8I	GCNNGC	4 cut(s)	701, 1098, 1397, 1968
CaiI	CAGNNNCTG	2 cut(s)	2438, 2476
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	2208
Cfr10I	RCCGGY	2 cut(s)	44, 90
Cfr13I	GGNCC	7 cut(s)	461, 914, 915, 953, 2295, 2630, 2673
ClaI	ATCGAT	1 cut(s)	941
CpoI	CGGWCCG	1 cut(s)	461
Csp6I	GTAC	5 cut(s)	42, 455, 793, 829, 2679
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CspI	CGGWCCG	1 cut(s)	461
CviQI	GTAC	5 cut(s)	42, 455, 793, 829, 2679
DdeI	CTNAG	7 cut(s)	213, 559, 755, 1491, 1841, 2309, 2330
DinI	GGCGCC	1 cut(s)	2207
DraI	TTTAAA	2 cut(s)	234, 1705
EaeI	YGGCCR	2 cut(s)	1333, 1366
Eam1104I	CTCTTC	2 cut(s)	1430, 1885
EarI	CTCTTC	2 cut(s)	1430, 1885
Ecl136II	GAGCTC	1 cut(s)	2093
Eco130I	CCWWGG	3 cut(s)	529, 918, 2626
Eco147I	AGGCCT	1 cut(s)	1910
Eco24I	GRGCYC	2 cut(s)	918, 2095
Eco32I	GATATC	1 cut(s)	945
Eco47I	GGWCC	5 cut(s)	461, 953, 2295, 2630, 2673
Eco53kI	GAGCTC	1 cut(s)	2093
Eco57I	CTGAAG	3 cut(s)	324, 2015, 2851
Eco81I	CCTNAGG	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	2093
EcoO109I	RGGNCCY	1 cut(s)	915
EcoRI	GAATTC	4 cut(s)	294, 349, 2039, 2719
EcoRII	CCWGG	6 cut(s)	956, 1058, 1190, 2161, 2313, 2833
EcoRV	GATATC	1 cut(s)	945
EcoT14I	CCWWGG	3 cut(s)	529, 918, 2626
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	2 cut(s)	918, 2095
EgeI	GGCGCC	1 cut(s)	2207
EheI	GGCGCC	1 cut(s)	2207
ErhI	CCWWGG	3 cut(s)	529, 918, 2626
Esp3I	CGTCTC	1 cut(s)	62
FalI	AAGNNNNNCTT	8 cut(s)	1200, 1232, 1227, 1259, 2129, 2161, 2752, 2784
FaqI	GGGAC	1 cut(s)	1041
FbaI	TGATCA	2 cut(s)	1663, 2599
FblI	GTMKAC	5 cut(s)	862, 928, 1341, 2958, 2988
FokI	GGATG	6 cut(s)	398, 497, 720, 1855, 2119, 2176
FriOI	GRGCYC	2 cut(s)	918, 2095
FspBI	CTAG	7 cut(s)	1971, 2036, 2181, 2202, 2246, 2736, 2967
GlaI	GCGC	1 cut(s)	2207
GsaI	CCCAGC	1 cut(s)	2214
GsuI	CTGGAG	1 cut(s)	1677
HaeII	RGCGCY	1 cut(s)	2209
HaeIII	GGCC	5 cut(s)	133, 916, 1335, 1368, 1910
HapII	CCGG	5 cut(s)	45, 91, 819, 984, 2920
HhaI	GCGC	1 cut(s)	2208
Hin1I	GRCGYC	1 cut(s)	2206
Hin6I	GCGC	1 cut(s)	2206
HinP1I	GCGC	1 cut(s)	2206
HindIII	AAGCTT	1 cut(s)	740
HpaII	CCGG	5 cut(s)	45, 91, 819, 984, 2920
Hpy188I	TCNGA	9 cut(s)	120, 304, 348, 448, 465, 1581, 1995, 2566, 2725
Hpy188III	TCNNGA	8 cut(s)	542, 1429, 1485, 1656, 1950, 2169, 2181, 2854
HpyAV	CCTTC	8 cut(s)	376, 410, 416, 463, 578, 1649, 1700, 2485
HpyCH4III	ACNGT	7 cut(s)	98, 461, 1093, 1169, 1315, 1809, 2904
HpyCH4IV	ACGT	1 cut(s)	2011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	485, 525, 739, 1613, 1787, 2438
HpyF3I	CTNAG	7 cut(s)	213, 559, 755, 1491, 1841, 2309, 2330
HpySE526I	ACGT	1 cut(s)	2011
Hsp92I	GRCGYC	1 cut(s)	2206
HspAI	GCGC	1 cut(s)	2206
KasI	GGCGCC	1 cut(s)	2205
KpnI	GGTACC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	1663, 2599
LguI	GCTCTTC	1 cut(s)	1430
LmnI	GCTCC	6 cut(s)	285, 1404, 1514, 2090, 2380, 2519
LweI	GCATC	6 cut(s)	475, 544, 739, 742, 2401, 2419
MaeI	CTAG	7 cut(s)	1971, 2036, 2181, 2202, 2246, 2736, 2967
MaeII	ACGT	1 cut(s)	2011
MboII	GAAGA	9 cut(s)	1076, 1417, 1454, 1869, 1902, 1971, 2007, 2008, 2137
MfeI	CAATTG	5 cut(s)	989, 1825, 2421, 2486, 2603
MflI	RGATCY	3 cut(s)	1952, 2165, 2848
MhlI	GDGCHC	3 cut(s)	918, 2095, 2338
MlsI	TGGCCA	2 cut(s)	1335, 1368
MluNI	TGGCCA	2 cut(s)	1335, 1368
Mly113I	GGCGCC	1 cut(s)	2206
MlyI	GAGTC	4 cut(s)	287, 895, 2064, 2630
MmeI	TCCRAC	3 cut(s)	607, 2264, 2497
Mox20I	TGGCCA	2 cut(s)	1335, 1368
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	3 cut(s)	35, 2144, 2176
MscI	TGGCCA	2 cut(s)	1335, 1368
MseI	TTAA	7 cut(s)	233, 242, 1077, 1478, 1704, 2097, 2115
MslI	CAYNNNNRTG	3 cut(s)	546, 801, 876
Msp20I	TGGCCA	2 cut(s)	1335, 1368
MspA1I	CMGCKG	2 cut(s)	968, 2404
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	5 cut(s)	45, 91, 819, 984, 2920
MspR9I	CCNGG	8 cut(s)	958, 985, 1060, 1192, 2163, 2315, 2835, 2921
MunI	CAATTG	5 cut(s)	989, 1825, 2421, 2486, 2603
MvaI	CCWGG	6 cut(s)	958, 1060, 1192, 2163, 2315, 2835
MwoI	GCNNNNNNNGC	6 cut(s)	485, 525, 739, 1613, 1787, 2438
NarI	GGCGCC	1 cut(s)	2206
NciI	CCSGG	2 cut(s)	985, 2921
NlaIV	GGNNCC	9 cut(s)	43, 897, 916, 955, 1459, 1791, 2167, 2207, 2674
NmuCI	GTSAC	7 cut(s)	887, 1226, 1770, 1820, 1916, 2472, 2702
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	2 cut(s)	935, 2625
PagI	TCATGA	1 cut(s)	541
PasI	CCCWGGG	1 cut(s)	1059
PceI	AGGCCT	1 cut(s)	1910
PciI	ACATGT	1 cut(s)	931
PciSI	GCTCTTC	1 cut(s)	1430
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 2869
PdmI	GAANNNNTTC	3 cut(s)	35, 2144, 2176
PflMI	CCANNNNNTGG	1 cut(s)	2126
PfoI	TCCNGGA	1 cut(s)	2161
PleI	GAGTC	4 cut(s)	286, 894, 2063, 2630
PluTI	GGCGCC	1 cut(s)	2209
PpsI	GAGTC	4 cut(s)	286, 894, 2063, 2630
PscI	ACATGT	1 cut(s)	931
PshBI	ATTAAT	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	1728
Psp124BI	GAGCTC	1 cut(s)	2095
Psp6I	CCWGG	6 cut(s)	956, 1058, 1190, 2161, 2313, 2833
PspFI	CCCAGC	1 cut(s)	2210
PspGI	CCWGG	6 cut(s)	956, 1058, 1190, 2161, 2313, 2833
PspN4I	GGNNCC	9 cut(s)	43, 897, 916, 955, 1459, 1791, 2167, 2207, 2674
PspOMI	GGGCCC	1 cut(s)	914
PspPI	GGNCC	7 cut(s)	461, 914, 915, 953, 2295, 2630, 2673
PsrI	GAACNNNNNNTAC	2 cut(s)	2680, 2712
PstI	CTGCAG	2 cut(s)	685, 1630
PstNI	CAGNNNCTG	2 cut(s)	2438, 2476
PsuI	RGATCY	3 cut(s)	1952, 2165, 2848
PvuII	CAGCTG	2 cut(s)	968, 2404
RsaI	GTAC	5 cut(s)	43, 456, 794, 830, 2680
RsaNI	GTAC	5 cut(s)	42, 455, 793, 829, 2679
RseI	CAYNNNNRTG	3 cut(s)	546, 801, 876
Rsr2I	CGGWCCG	1 cut(s)	461
RsrII	CGGWCCG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	2095
SapI	GCTCTTC	1 cut(s)	1430
SaqAI	TTAA	7 cut(s)	233, 242, 1077, 1478, 1704, 2097, 2115
Sau96I	GGNCC	7 cut(s)	461, 914, 915, 953, 2295, 2630, 2673
SchI	GAGTC	4 cut(s)	287, 895, 2064, 2630
ScrFI	CCNGG	8 cut(s)	958, 985, 1060, 1192, 2163, 2315, 2835, 2921
SduI	GDGCHC	3 cut(s)	918, 2095, 2338
SfaNI	GCATC	6 cut(s)	475, 544, 739, 742, 2401, 2419
SfcI	CTRYAG	4 cut(s)	681, 1626, 2274, 2369
SfoI	GGCGCC	1 cut(s)	2207
SinI	GGWCC	5 cut(s)	461, 953, 2295, 2630, 2673
SmiMI	CAYNNNNRTG	3 cut(s)	546, 801, 876
SmlI	CTYRAG	5 cut(s)	1076, 1383, 1775, 1912, 2852
SmoI	CTYRAG	5 cut(s)	1076, 1383, 1775, 1912, 2852
SseBI	AGGCCT	1 cut(s)	1910
SsiI	CCGC	4 cut(s)	55, 1687, 2454, 2692
SspDI	GGCGCC	1 cut(s)	2205
SspI	AATATT	1 cut(s)	2101
SspMI	CTAG	7 cut(s)	1971, 2036, 2181, 2202, 2246, 2736, 2967
SstI	GAGCTC	1 cut(s)	2095
StuI	AGGCCT	1 cut(s)	1910
StyD4I	CCNGG	8 cut(s)	956, 983, 1058, 1190, 2161, 2313, 2833, 2919
StyI	CCWWGG	3 cut(s)	529, 918, 2626
TaaI	ACNGT	7 cut(s)	98, 461, 1093, 1169, 1315, 1809, 2904
TaiI	ACGT	1 cut(s)	2014
TaqI	TCGA	8 cut(s)	262, 281, 941, 1160, 1272, 1413, 2053, 2356
TatI	WGTACW	2 cut(s)	454, 828
TauI	GCSGC	3 cut(s)	58, 1689, 2456
Tru1I	TTAA	7 cut(s)	233, 242, 1077, 1478, 1704, 2097, 2115
Tru9I	TTAA	7 cut(s)	233, 242, 1077, 1478, 1704, 2097, 2115
TseFI	GTSAC	7 cut(s)	887, 1226, 1770, 1820, 1916, 2472, 2702
Tsp45I	GTSAC	7 cut(s)	887, 1226, 1770, 1820, 1916, 2472, 2702
TspGWI	ACGGA	4 cut(s)	86, 346, 1683, 2542
Van91I	CCANNNNNTGG	1 cut(s)	2126
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	5 cut(s)	461, 953, 2295, 2630, 2673
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	5 cut(s)	294, 349, 1446, 2039, 2719
XbaI	TCTAGA	1 cut(s)	2180
XceI	RCATGY	2 cut(s)	935, 2625
XmiI	GTMKAC	5 cut(s)	862, 928, 1341, 2958, 2988
XmnI	GAANNNNTTC	3 cut(s)	35, 2144, 2176
XspI	CTAG	7 cut(s)	1971, 2036, 2181, 2202, 2246, 2736, 2967
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.