Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

52331428 .. 52340125

Gene Structure 8698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3357 bp

ATGCACTTAGGGTTTTTGCGAGGAGGAAAAGTAATGTCGCGGACGGATAGGATGGCTTCTGATCTTAGCAGGACCGCCGGTCCGGTCGAAAGAGACATCGAGCAGGCCATTACTGCTTTAAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCCGTTCTAATATGGTTCTCAGGGAAGGAGGAAAAACACCTTAAACTCAGCCATGTTTCTAGAATTATATCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATTTATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGCGTACACGGTCAGATGAAGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTAGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCAGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCATTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCCCCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATCATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAATTATCAATCAGGGCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAACAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCTGCAAAGGAAGTAATCCAGTCACTGACTGCACAGTTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTACTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACAGCCAGTTGCTTTCTAATGGATCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCAGACTTGGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGATGAGGCTGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1118

Amino Acids

120.78

Weight (kDa)

9.16

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	34 - 140	2e-09	Pleckstrin homology domain
WD40_RLD	PF25390	279 - 662	6.1e-80	RCC1-like domain
RCC1	PF00415	339 - 388	7e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	377 - 402	1e-05	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	391 - 443	5.5e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	430 - 458	8.1e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	447 - 495	1.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	511 - 559	7.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	547 - 575	7.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	562 - 611	6.6e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	616 - 663	4.3e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	667 - 733	1.8e-15	FYVE zinc finger
BRX_N	PF13713	930 - 964	1.8e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	970 - 1038	8.3e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1044 - 1099	1.9e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	342, 2082
AatII	GACGTC	1 cut(s)	969
AccB1I	GGYRCC	2 cut(s)	1811, 2559
AccB7I	CCANNNNNTGG	1 cut(s)	2480
AccI	GTMKAC	5 cut(s)	1216, 1282, 1695, 3312, 3342
AccII	CGCG	1 cut(s)	40
AciI	CCGC	5 cut(s)	40, 75, 181, 2041, 3046
AclWI	GGATC	8 cut(s)	1622, 2514, 2527, 2915, 3007, 3021, 3034, 3210
AcoI	YGGCCR	2 cut(s)	1687, 1720
AcsI	RAATTY	5 cut(s)	468, 523, 1800, 2393, 3073
AcuI	CTGAAG	4 cut(s)	498, 660, 2369, 3205
AcyI	GRCGYC	2 cut(s)	966, 2560
AfaI	GTAC	7 cut(s)	146, 699, 732, 960, 1148, 1184, 3034
AflII	CTTAAG	1 cut(s)	1430
AflIII	ACRYGT	2 cut(s)	1285, 2363
AhdI	GACNNNNNGTC	1 cut(s)	78
AjnI	CCWGG	6 cut(s)	1310, 1412, 1544, 2515, 2667, 3187
Alw21I	GWGCWC	2 cut(s)	2449, 2692
Alw26I	GTCTC	5 cut(s)	87, 1294, 2416, 2783, 3125
AlwI	GGATC	8 cut(s)	1622, 2514, 2527, 2915, 3007, 3021, 3034, 3210
AlwNI	CAGNNNCTG	2 cut(s)	2792, 2830
AoxI	GGCC	6 cut(s)	105, 305, 1268, 1687, 1720, 2142
ApaI	GGGCCC	1 cut(s)	1272
ApoI	RAATTY	5 cut(s)	468, 523, 1800, 2393, 3073
AseI	ATTAAT	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	2498, 2530
AspLEI	GCGC	1 cut(s)	2562
AspS9I	GGNCC	8 cut(s)	72, 80, 1268, 1269, 1307, 2143, 2649, 2984
AsuC2I	CCSGG	3 cut(s)	271, 1339, 3275
AsuHPI	GGTGA	9 cut(s)	563, 833, 1154, 1187, 1205, 1370, 1534, 1592, 2607
AvaII	GGWCC	5 cut(s)	72, 80, 1307, 2649, 2984
AxyI	CCTNAGG	1 cut(s)	829
BaeGI	GKGCMC	2 cut(s)	1227, 1272
BalI	TGGCCA	2 cut(s)	1689, 1722
BamHI	GGATCC	2 cut(s)	2519, 3026
BanI	GGYRCC	2 cut(s)	1811, 2559
BanII	GRGCYC	3 cut(s)	1272, 2267, 2449
BauI	CACGAG	1 cut(s)	2310
BbsI	GAAGAC	2 cut(s)	1430, 2223
Bbv12I	GWGCWC	2 cut(s)	2449, 2692
BbvCI	CCTCAGC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	6 cut(s)	1312, 1414, 1546, 2517, 2669, 3189
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	3 cut(s)	2017, 2215, 2953
BcnI	CCSGG	3 cut(s)	271, 1339, 3275
BcoDI	GTCTC	5 cut(s)	87, 1294, 2416, 2783, 3125
BfmI	CTRYAG	5 cut(s)	951, 1980, 2205, 2628, 2723
BfoI	RGCGCY	1 cut(s)	2563
BfrI	CTTAAG	1 cut(s)	1430
BfuI	GTATCC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	2306
Bme1390I	CCNGG	9 cut(s)	271, 1312, 1339, 1414, 1546, 2517, 2669, 3189, 3275
Bme18I	GGWCC	5 cut(s)	72, 80, 1307, 2649, 2984
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmgT120I	GGNCC	8 cut(s)	72, 80, 1268, 1269, 1307, 2143, 2649, 2984
BmiI	GGNNCC	8 cut(s)	1251, 1270, 1309, 1813, 2145, 2521, 2561, 3028
BmrFI	CCNGG	9 cut(s)	271, 1312, 1339, 1414, 1546, 2517, 2669, 3189, 3275
BmrI	ACTGGG	3 cut(s)	1255, 1752, 2221
BmsI	GCATC	6 cut(s)	745, 814, 1093, 1096, 2755, 2773
BmuI	ACTGGG	3 cut(s)	1255, 1752, 2221
BpiI	GAAGAC	2 cut(s)	1430, 2223
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
Bpu10I	CCTNAGC	2 cut(s)	387, 2663
BpuEI	CTTGAG	5 cut(s)	125, 1722, 2114, 2251, 3191
BpuMI	CCSGG	3 cut(s)	271, 1339, 3275
BsaHI	GRCGYC	2 cut(s)	966, 2560
BsaJI	CCNNGG	9 cut(s)	302, 660, 799, 1272, 1310, 1412, 1413, 1545, 2980
BsaWI	WCCGGW	2 cut(s)	82, 1172
BsaXI	ACNNNNNCTCC	8 cut(s)	15, 45, 308, 338, 855, 885, 2575, 2605
Bse118I	RCCGGY	1 cut(s)	77
Bse21I	CCTNAGG	1 cut(s)	829
Bse3DI	GCAATG	2 cut(s)	756, 975
BseBI	CCWGG	6 cut(s)	1312, 1414, 1546, 2517, 2669, 3189
BseDI	CCNNGG	9 cut(s)	302, 660, 799, 1272, 1310, 1412, 1413, 1545, 2980
BseGI	GGATG	7 cut(s)	57, 565, 760, 1087, 2222, 2486, 2543
BseMI	GCAATG	2 cut(s)	756, 975
BseMII	CTCAG	6 cut(s)	231, 259, 378, 1123, 1836, 2186
BseRI	GAGGAG	2 cut(s)	36, 507
BseSI	GKGCMC	2 cut(s)	1227, 1272
BseYI	CCCAGC	1 cut(s)	2564
BsgI	GTGCAG	2 cut(s)	585, 2820
Bsh1236I	CGCG	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	6 cut(s)	107, 307, 1270, 1689, 1722, 2144
BshNI	GGYRCC	2 cut(s)	1811, 2559
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	2449, 2692
BsiSI	CCGG	6 cut(s)	78, 83, 270, 1173, 1338, 3274
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	5 cut(s)	87, 1294, 2416, 2783, 3125
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	6 cut(s)	107, 307, 1270, 1689, 1722, 2144
Bsp120I	GGGCCC	1 cut(s)	1268
Bsp1286I	GDGCHC	5 cut(s)	1227, 1272, 2267, 2449, 2692
Bsp1407I	TGTACA	1 cut(s)	1182
BspACI	CCGC	5 cut(s)	40, 75, 181, 2041, 3046
BspANI	GGCC	6 cut(s)	107, 307, 1270, 1689, 1722, 2144
BspCNI	CTCAG	6 cut(s)	230, 258, 379, 1122, 1837, 2187
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	8 cut(s)	1251, 1270, 1309, 1813, 2145, 2521, 2561, 3028
BspMAI	CTGCAG	2 cut(s)	955, 1984
BspPI	GGATC	8 cut(s)	1622, 2514, 2527, 2915, 3007, 3021, 3034, 3210
BspQI	GCTCTTC	1 cut(s)	1784
BspT107I	GGYRCC	2 cut(s)	1811, 2559
BspTI	CTTAAG	1 cut(s)	1430
BsrDI	GCAATG	2 cut(s)	756, 975
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	1182
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	9 cut(s)	302, 660, 799, 1272, 1310, 1412, 1413, 1545, 2980
BssNAI	GTATAC	2 cut(s)	1283, 1696
BssNI	GRCGYC	2 cut(s)	966, 2560
BssSI	CACGAG	1 cut(s)	2310
BssT1I	CCWWGG	4 cut(s)	660, 799, 1272, 2980
Bst1107I	GTATAC	2 cut(s)	1283, 1696
Bst2BI	CACGAG	1 cut(s)	2310
Bst2UI	CCWGG	6 cut(s)	1312, 1414, 1546, 2517, 2669, 3189
Bst4CI	ACNGT	7 cut(s)	737, 1447, 1523, 1669, 2163, 2841, 3258
Bst6I	CTCTTC	2 cut(s)	1784, 2239
BstACI	GRCGYC	2 cut(s)	966, 2560
BstAFI	CTTAAG	1 cut(s)	1430
BstAPI	GCANNNNNTGC	2 cut(s)	755, 2792
BstAUI	TGTACA	1 cut(s)	1182
BstC8I	GCNNGC	3 cut(s)	105, 1055, 1452
BstDSI	CCRYGG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	2666
BstF5I	GGATG	7 cut(s)	57, 565, 760, 1087, 2222, 2486, 2543
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	2563
BstHHI	GCGC	1 cut(s)	2562
BstMAI	GTCTC	5 cut(s)	87, 1294, 2416, 2783, 3125
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 180, 726, 755, 795, 1093, 1967, 2141, 2792
BstNI	CCWGG	6 cut(s)	1312, 1414, 1546, 2517, 2669, 3189
BstNSI	RCATGY	3 cut(s)	998, 1289, 2979
BstSCI	CCNGG	9 cut(s)	269, 1310, 1337, 1412, 1544, 2515, 2667, 3187, 3273
BstSFI	CTRYAG	5 cut(s)	951, 1980, 2205, 2628, 2723
BstSLI	GKGCMC	2 cut(s)	1227, 1272
BstUI	CGCG	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	1430, 2223
BstX2I	RGATCY	4 cut(s)	2306, 2519, 3026, 3202
BstXI	CCANNNNNNTGG	2 cut(s)	806, 1420
BstYI	RGATCY	4 cut(s)	2306, 2519, 3026, 3202
BstZ17I	GTATAC	2 cut(s)	1283, 1696
Bsu36I	CCTNAGG	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	6 cut(s)	107, 307, 1270, 1689, 1722, 2144
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	7 cut(s)	57, 565, 760, 1087, 2222, 2486, 2543
BtsI	GCAGTG	2 cut(s)	960, 2444
BtsIMutI	CAGTG	9 cut(s)	353, 406, 784, 960, 1243, 1443, 2444, 2828, 3263
Cac8I	GCNNGC	3 cut(s)	105, 1055, 1452
CaiI	CAGNNNCTG	2 cut(s)	2792, 2830
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	2562
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	8 cut(s)	72, 80, 1268, 1269, 1307, 2143, 2649, 2984
CpoI	CGGWCCG	1 cut(s)	80
Csp6I	GTAC	7 cut(s)	145, 698, 731, 959, 1147, 1183, 3033
CspCI	CAANNNNNGTGG	2 cut(s)	1906, 1941
CspI	CGGWCCG	1 cut(s)	80
CviQI	GTAC	7 cut(s)	145, 698, 731, 959, 1147, 1183, 3033
DinI	GGCGCC	1 cut(s)	2561
DraI	TTTAAA	3 cut(s)	120, 408, 2059
DriI	GACNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	1687, 1720
Eam1104I	CTCTTC	2 cut(s)	1784, 2239
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	2 cut(s)	1784, 2239
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	2447
Eco130I	CCWWGG	4 cut(s)	660, 799, 1272, 2980
Eco24I	GRGCYC	3 cut(s)	1272, 2267, 2449
Eco47I	GGWCC	5 cut(s)	72, 80, 1307, 2649, 2984
Eco53kI	GAGCTC	1 cut(s)	2447
Eco57I	CTGAAG	4 cut(s)	498, 660, 2369, 3205
Eco81I	CCTNAGG	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	2447
EcoNI	CCTNNNNNAGG	1 cut(s)	2666
EcoO109I	RGGNCCY	1 cut(s)	1269
EcoRI	GAATTC	4 cut(s)	468, 523, 2393, 3073
EcoRII	CCWGG	6 cut(s)	1310, 1412, 1544, 2515, 2667, 3187
EcoT14I	CCWWGG	4 cut(s)	660, 799, 1272, 2980
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	3 cut(s)	1272, 2267, 2449
EgeI	GGCGCC	1 cut(s)	2561
EheI	GGCGCC	1 cut(s)	2561
ErhI	CCWWGG	4 cut(s)	660, 799, 1272, 2980
FalI	AAGNNNNNCTT	8 cut(s)	1554, 1586, 1581, 1613, 2483, 2515, 3106, 3138
FaqI	GGGAC	1 cut(s)	638
FbaI	TGATCA	3 cut(s)	2017, 2215, 2953
FblI	GTMKAC	5 cut(s)	1216, 1282, 1695, 3312, 3342
FokI	GGATG	7 cut(s)	64, 572, 767, 1074, 2209, 2473, 2530
FriOI	GRGCYC	3 cut(s)	1272, 2267, 2449
GlaI	GCGC	1 cut(s)	2561
GsaI	CCCAGC	1 cut(s)	2568
HaeII	RGCGCY	1 cut(s)	2563
HaeIII	GGCC	6 cut(s)	107, 307, 1270, 1689, 1722, 2144
HapII	CCGG	6 cut(s)	78, 83, 270, 1173, 1338, 3274
HhaI	GCGC	1 cut(s)	2562
Hin1I	GRCGYC	2 cut(s)	966, 2560
Hin6I	GCGC	1 cut(s)	2560
HinP1I	GCGC	1 cut(s)	2560
HindIII	AAGCTT	1 cut(s)	1094
HpaII	CCGG	6 cut(s)	78, 83, 270, 1173, 1338, 3274
HphI	GGTGA	9 cut(s)	563, 833, 1154, 1187, 1205, 1370, 1534, 1592, 2607
Hpy99I	CGWCG	1 cut(s)	968
HpyCH4III	ACNGT	7 cut(s)	737, 1447, 1523, 1669, 2163, 2841, 3258
HpyCH4IV	ACGT	2 cut(s)	966, 2365
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 180, 726, 755, 795, 1093, 1967, 2141, 2792
HpySE526I	ACGT	2 cut(s)	966, 2365
Hsp92I	GRCGYC	2 cut(s)	966, 2560
HspAI	GCGC	1 cut(s)	2560
KasI	GGCGCC	1 cut(s)	2559
Ksp22I	TGATCA	3 cut(s)	2017, 2215, 2953
LguI	GCTCTTC	1 cut(s)	1784
LmnI	GCTCC	7 cut(s)	128, 459, 1758, 1868, 2444, 2734, 2873
LweI	GCATC	6 cut(s)	745, 814, 1093, 1096, 2755, 2773
MaeII	ACGT	2 cut(s)	966, 2365
MfeI	CAATTG	4 cut(s)	1343, 2179, 2775, 2957
MflI	RGATCY	4 cut(s)	2306, 2519, 3026, 3202
MhlI	GDGCHC	5 cut(s)	1227, 1272, 2267, 2449, 2692
MlsI	TGGCCA	2 cut(s)	1689, 1722
MluNI	TGGCCA	2 cut(s)	1689, 1722
Mly113I	GGCGCC	1 cut(s)	2560
MlyI	GAGTC	5 cut(s)	206, 461, 1249, 2418, 2984
MmeI	TCCRAC	3 cut(s)	877, 2618, 2851
Mox20I	TGGCCA	2 cut(s)	1689, 1722
Mph1103I	ATGCAT	1 cut(s)	760
MroXI	GAANNNNTTC	2 cut(s)	2498, 2530
MscI	TGGCCA	2 cut(s)	1689, 1722
MseI	TTAA	9 cut(s)	119, 240, 407, 416, 1431, 1832, 2058, 2451, 2469
MslI	CAYNNNNRTG	3 cut(s)	816, 1155, 1230
Msp20I	TGGCCA	2 cut(s)	1689, 1722
MspA1I	CMGCKG	2 cut(s)	1322, 2758
MspCI	CTTAAG	1 cut(s)	1430
MspI	CCGG	6 cut(s)	78, 83, 270, 1173, 1338, 3274
MspR9I	CCNGG	9 cut(s)	271, 1312, 1339, 1414, 1546, 2517, 2669, 3189, 3275
MunI	CAATTG	4 cut(s)	1343, 2179, 2775, 2957
MvaI	CCWGG	6 cut(s)	1312, 1414, 1546, 2517, 2669, 3189
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	9 cut(s)	113, 180, 726, 755, 795, 1093, 1967, 2141, 2792
NarI	GGCGCC	1 cut(s)	2560
NciI	CCSGG	3 cut(s)	271, 1339, 3275
NlaIV	GGNNCC	8 cut(s)	1251, 1270, 1309, 1813, 2145, 2521, 2561, 3028
NmuCI	GTSAC	7 cut(s)	1241, 1580, 2124, 2174, 2270, 2826, 3056
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	3 cut(s)	998, 1289, 2979
PagI	TCATGA	1 cut(s)	811
PasI	CCCWGGG	1 cut(s)	1413
PciI	ACATGT	1 cut(s)	1285
PciSI	GCTCTTC	1 cut(s)	1784
PcsI	WCGNNNNNNNCGW	1 cut(s)	3223
PdmI	GAANNNNTTC	2 cut(s)	2498, 2530
PfeI	GAWTC	8 cut(s)	680, 923, 947, 1043, 1424, 2300, 2342, 3119
PflMI	CCANNNNNTGG	1 cut(s)	2480
PfoI	TCCNGGA	1 cut(s)	2515
PleI	GAGTC	5 cut(s)	205, 460, 1248, 2417, 2984
PluTI	GGCGCC	1 cut(s)	2563
PpsI	GAGTC	5 cut(s)	205, 460, 1248, 2417, 2984
PscI	ACATGT	1 cut(s)	1285
PshBI	ATTAAT	1 cut(s)	416
PsiI	TTATAA	2 cut(s)	342, 2082
Psp124BI	GAGCTC	1 cut(s)	2449
Psp6I	CCWGG	6 cut(s)	1310, 1412, 1544, 2515, 2667, 3187
PspFI	CCCAGC	1 cut(s)	2564
PspGI	CCWGG	6 cut(s)	1310, 1412, 1544, 2515, 2667, 3187
PspN4I	GGNNCC	8 cut(s)	1251, 1270, 1309, 1813, 2145, 2521, 2561, 3028
PspOMI	GGGCCC	1 cut(s)	1268
PspPI	GGNCC	8 cut(s)	72, 80, 1268, 1269, 1307, 2143, 2649, 2984
PsrI	GAACNNNNNNTAC	2 cut(s)	3034, 3066
PstI	CTGCAG	2 cut(s)	955, 1984
PstNI	CAGNNNCTG	2 cut(s)	2792, 2830
PsuI	RGATCY	4 cut(s)	2306, 2519, 3026, 3202
PvuII	CAGCTG	2 cut(s)	1322, 2758
RsaI	GTAC	7 cut(s)	146, 699, 732, 960, 1148, 1184, 3034
RsaNI	GTAC	7 cut(s)	145, 698, 731, 959, 1147, 1183, 3033
RseI	CAYNNNNRTG	3 cut(s)	816, 1155, 1230
Rsr2I	CGGWCCG	1 cut(s)	80
RsrII	CGGWCCG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	2449
SapI	GCTCTTC	1 cut(s)	1784
SaqAI	TTAA	9 cut(s)	119, 240, 407, 416, 1431, 1832, 2058, 2451, 2469
Sau96I	GGNCC	8 cut(s)	72, 80, 1268, 1269, 1307, 2143, 2649, 2984
SchI	GAGTC	5 cut(s)	206, 461, 1249, 2418, 2984
ScrFI	CCNGG	9 cut(s)	271, 1312, 1339, 1414, 1546, 2517, 2669, 3189, 3275
SduI	GDGCHC	5 cut(s)	1227, 1272, 2267, 2449, 2692
SfaNI	GCATC	6 cut(s)	745, 814, 1093, 1096, 2755, 2773
SfcI	CTRYAG	5 cut(s)	951, 1980, 2205, 2628, 2723
SfoI	GGCGCC	1 cut(s)	2561
SinI	GGWCC	5 cut(s)	72, 80, 1307, 2649, 2984
SmiMI	CAYNNNNRTG	3 cut(s)	816, 1155, 1230
SmlI	CTYRAG	6 cut(s)	140, 1430, 1737, 2129, 2266, 3206
SmoI	CTYRAG	6 cut(s)	140, 1430, 1737, 2129, 2266, 3206
SsiI	CCGC	5 cut(s)	40, 75, 181, 2041, 3046
SspDI	GGCGCC	1 cut(s)	2559
SspI	AATATT	1 cut(s)	2455
SstI	GAGCTC	1 cut(s)	2449
StyD4I	CCNGG	9 cut(s)	269, 1310, 1337, 1412, 1544, 2515, 2667, 3187, 3273
StyI	CCWWGG	4 cut(s)	660, 799, 1272, 2980
TaaI	ACNGT	7 cut(s)	737, 1447, 1523, 1669, 2163, 2841, 3258
TaiI	ACGT	2 cut(s)	969, 2368
TaqI	TCGA	9 cut(s)	87, 99, 436, 963, 1514, 1626, 1767, 2407, 2710
TatI	WGTACW	2 cut(s)	697, 1182
TauI	GCSGC	1 cut(s)	2043
TfiI	GAWTC	8 cut(s)	680, 923, 947, 1043, 1424, 2300, 2342, 3119
Tru1I	TTAA	9 cut(s)	119, 240, 407, 416, 1431, 1832, 2058, 2451, 2469
Tru9I	TTAA	9 cut(s)	119, 240, 407, 416, 1431, 1832, 2058, 2451, 2469
TscAI	CASTG	9 cut(s)	360, 406, 784, 960, 1250, 1450, 2444, 2835, 3263
TseFI	GTSAC	7 cut(s)	1241, 1580, 2124, 2174, 2270, 2826, 3056
Tsp45I	GTSAC	7 cut(s)	1241, 1580, 2124, 2174, 2270, 2826, 3056
TspGWI	ACGGA	6 cut(s)	59, 162, 190, 520, 1242, 2896
TspRI	CASTG	9 cut(s)	360, 406, 784, 960, 1250, 1450, 2444, 2835, 3263
Van91I	CCANNNNNTGG	1 cut(s)	2480
Vha464I	CTTAAG	1 cut(s)	1430
VpaK11BI	GGWCC	5 cut(s)	72, 80, 1307, 2649, 2984
VspI	ATTAAT	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	2666
XapI	RAATTY	5 cut(s)	468, 523, 1800, 2393, 3073
XbaI	TCTAGA	2 cut(s)	257, 2534
XceI	RCATGY	3 cut(s)	998, 1289, 2979
XmiI	GTMKAC	5 cut(s)	1216, 1282, 1695, 3312, 3342
XmnI	GAANNNNTTC	2 cut(s)	2498, 2530
ZraI	GACGTC	1 cut(s)	967
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.