Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

12761396 .. 12766258

Gene Structure 4863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGTCGCGGACCGAGAGGATGGGTTCGGATCTTAGCAGGACCGGCCCCATTGAAAGAGACATCGAGCAGGCTATTACTGCTCTAAAGAAAGGGGCATACCTGCTCAAGTATGGAAGAAGGGGGAAGCCAAAGTTTTGTCCATTTCGTCTTTCCAATGATGAATCCGTTCTAATATGGTTCTCTGGGAAAGAGGAAAAGCACCTTAAACTAAGCCATGTGTCTAGAATTATTTCTGGGCAACGCACTCCAATCTTTCAAAGGTATCCACGGCCTGAGAAGGAGTACCAGTCATTTTCCTTAATATATAGTGACAGATCACTAGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTTAGTGGCTTAAAAGCATTGATATCCCGAAGCCATCATAGAAAATGGAGAACAGAGTCAAGGAGTGATGGAATTCCATCTGAAGCAAATAGCCCTAGAACATACACGCGGATAAGCTCTCCTCTACATTCTCCATTTGGTAGCAACGATAGCTTACAGAAGGATAGTGCAGATCACCTTCGCCTTCATAGTCCATATGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTTTCAGATGTGATACTGTATGCTGTTCCTCCCAAGGGTTTCTTCCCTCCAGATTCGGCCAGTGCTTCAGTACATTCTGTGTCATCTGGTGGCTCAGATGGTGCACCTGGGCAGATGAAGGCAATGGCAATGGATGCTTTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGAGATGTTTTCATGTGGGGAGAAGGCACAGGAGATGGTGTTGTGGGTGGTGGTTCTCACAGAGTTGGAAGCTGTTTTGGTGCCAAAATGGATTCTTTGTTGCCCAAAGCCTTAGAATCTAAAGTCGTACTTGACGTCCAAAACATTGCCTGTGGTGGTCGTCATGCTGCTTTAGTAACTAAGCAAGGGGAGATTTTTTCTTGGGGAGAGGAGTCAGGGGGCAGGCTTGGGCATGGTGTAGATGTTGACGTTTTGCAACCAAAGCTCATTGATGCACTTAGTAATATCAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACTTGTGCTGTTACCCTTTCTGGTGATCTGTACACATGGGGTGATGGAACTTACAATTTTGGTCTACTTGGACATGGAAATGAAGTGAGCCATTGGGTCCCCAAAAGAGTAAATGGACCCTTGGAGGCTATACATGTCTCATCCATATCTTGTGGACCCTGGCACACAGCAGTTGTAACATCTGCTGGGCAGTTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGCCATGGTGATCGGAAAAGTGTTTCAATTCCCAGGGAAATAGAATCCTTAAAGGGCCTTCGCACTGTACAAGCAGCTTGTGGCGTTTGGCATACTGCTGCAGTTGTAGAAGTCATGGTTGGGAATTCAAGTGCCAGCAACTGTTCATTAGGAAAGCTGTTCACTTGGGGAGATGGTGATAACGGTAGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAATTTTTGTCGAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACAACATCTGGTCATGTCTACACAATGGGAAGTCCTGTTTATGGCCAGTTAGGAAATCCTCAAGCTGATGGAAAGCTCCCAACTCGAGTTGAGGGAAAGCTCTCCAAAAGTTATGTGGAAGAGATTGCTTGTGGTACCTATCATGTTGCAGTTTTAACTTCAAGACCTGAAGTGTATACTTGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGAAATATAGATGACCGGAACTCCCCAACACTAGTTGAAGCTCTGAAAGATAAGCAAGTCCAGAGTATTGCTTGCGGTGCTAATTTTACTGCAGTTATTTGCCTTCATAAATGGGTTTCAGGAGTTGATCAGTCGTACGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

669

Amino Acids

71.73

Weight (kDa)

7.11

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	22 - 128	2e-09	Pleckstrin homology domain
WD40_RLD	PF25390	269 - 652	3.5e-81	RCC1-like domain
RCC1	PF00415	329 - 378	5.9e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	367 - 392	1.3e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	381 - 433	2.3e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	420 - 448	4.5e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	437 - 485	7.1e-15	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	501 - 549	1.7e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	552 - 601	1e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	606 - 653	3.9e-15	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	939
Acc36I	ACCTGC	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	1781
AccB1I	GGYRCC	2 cut(s)	881, 1781
AccI	GTMKAC	3 cut(s)	1186, 1665, 1823
AccII	CGCG	2 cut(s)	7, 469
AciI	CCGC	3 cut(s)	7, 469, 1935
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	2 cut(s)	648, 1690
AcsI	RAATTY	2 cut(s)	432, 1474
AcuI	CTGAAG	3 cut(s)	462, 642, 1836
AcyI	GRCGYC	1 cut(s)	936
AfaI	GTAC	8 cut(s)	284, 663, 930, 1118, 1154, 1419, 1783, 1997
AfiI	CCNNNNNNNGG	3 cut(s)	575, 626, 1688
AflIII	ACRYGT	1 cut(s)	1255
AgsI	TTSAA	7 cut(s)	53, 257, 1377, 1479, 1598, 1809, 1898
AhlI	ACTAGT	1 cut(s)	1891
AjnI	CCWGG	3 cut(s)	697, 1280, 1382
AjuI	GAANNNNNNNTTGG	4 cut(s)	617, 649, 1452, 1484
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	51, 1264
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	1491
Ama87I	CYCGRG	1 cut(s)	1731
AoxI	GGCC	6 cut(s)	43, 269, 648, 1351, 1405, 1690
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	4 cut(s)	968, 1424, 1448, 1586
ApoI	RAATTY	2 cut(s)	432, 1474
Asp700I	GAANNNNTTC	2 cut(s)	165, 229
Asp718I	GGTACC	1 cut(s)	1781
AspS9I	GGNCC	8 cut(s)	9, 39, 44, 1219, 1238, 1277, 1351, 1405
AsuHPI	GGTGA	9 cut(s)	527, 803, 1124, 1157, 1175, 1340, 1370, 1538, 1562
AvaI	CYCGRG	1 cut(s)	1731
AvaII	GGWCC	5 cut(s)	9, 39, 1219, 1238, 1277
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	1692
BanI	GGYRCC	2 cut(s)	881, 1781
Bbv12I	GWGCWC	1 cut(s)	697
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	955, 1435, 1436, 1573
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	699, 1282, 1384
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	1987
BcoDI	GTCTC	2 cut(s)	51, 1264
BcuI	ACTAGT	1 cut(s)	1891
BfaI	CTAG	4 cut(s)	222, 320, 456, 1892
BfmI	CTRYAG	2 cut(s)	1449, 1950
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	969, 1425, 1449, 1587
BlsI	GCNGC	4 cut(s)	970, 1426, 1450, 1588
Bme1390I	CCNGG	3 cut(s)	699, 1282, 1384
Bme18I	GGWCC	5 cut(s)	9, 39, 1219, 1238, 1277
BmeT110I	CYCGRG	1 cut(s)	1731
BmgT120I	GGNCC	8 cut(s)	9, 39, 44, 1219, 1238, 1277, 1351, 1405
BmiI	GGNNCC	7 cut(s)	46, 883, 1220, 1221, 1240, 1279, 1783
BmrFI	CCNGG	3 cut(s)	699, 1282, 1384
BmsI	GCATC	3 cut(s)	715, 784, 1063
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	89, 1692
BsaHI	GRCGYC	1 cut(s)	936
BsaWI	WCCGGW	1 cut(s)	1875
BsaXI	ACNNNNNCTCC	6 cut(s)	272, 302, 825, 855, 1865, 1895
Bsc4I	CCNNNNNNNGG	3 cut(s)	575, 626, 1688
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	286, 651, 747, 1693
Bse3DI	GCAATG	3 cut(s)	720, 726, 945
BseBI	CCWGG	3 cut(s)	699, 1282, 1384
BseGI	GGATG	3 cut(s)	24, 730, 1262
BseLI	CCNNNNNNNGG	3 cut(s)	575, 626, 1688
BseMI	GCAATG	3 cut(s)	720, 726, 945
BseMII	CTCAG	3 cut(s)	264, 342, 699
BseNI	ACTGG	4 cut(s)	286, 651, 747, 1693
BseRI	GAGGAG	2 cut(s)	471, 1025
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	4 cut(s)	955, 1435, 1436, 1573
BseYI	CCCAGC	1 cut(s)	1307
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	2 cut(s)	7, 469
BshFI	GGCC	6 cut(s)	45, 271, 650, 1353, 1407, 1692
BshNI	GGYRCC	2 cut(s)	881, 1781
BsiHKAI	GWGCWC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	1731
BsiSI	CCGG	2 cut(s)	42, 1876
BsiWI	CGTACG	1 cut(s)	1995
BslFI	GGGAC	1 cut(s)	1205
BslI	CCNNNNNNNGG	3 cut(s)	575, 626, 1688
BsmAI	GTCTC	2 cut(s)	51, 1264
BsmFI	GGGAC	1 cut(s)	1205
BsnI	GGCC	6 cut(s)	45, 271, 650, 1353, 1407, 1692
BsoBI	CYCGRG	1 cut(s)	1731
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp1407I	TGTACA	2 cut(s)	1152, 1417
Bsp143I	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
Bsp19I	CCATGG	1 cut(s)	1354
BspACI	CCGC	3 cut(s)	7, 469, 1935
BspANI	GGCC	6 cut(s)	45, 271, 650, 1353, 1407, 1692
BspCNI	CTCAG	3 cut(s)	265, 343, 698
BspFNI	CGCG	2 cut(s)	7, 469
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	7 cut(s)	46, 883, 1220, 1221, 1240, 1279, 1783
BspMAI	CTGCAG	2 cut(s)	1453, 1954
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	2 cut(s)	881, 1781
BsrDI	GCAATG	3 cut(s)	720, 726, 945
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	2 cut(s)	1152, 1417
BsrI	ACTGG	4 cut(s)	286, 651, 747, 1693
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
BssNAI	GTATAC	1 cut(s)	1824
BssNI	GRCGYC	1 cut(s)	936
BssT1I	CCWWGG	5 cut(s)	624, 769, 798, 1242, 1354
Bst1107I	GTATAC	1 cut(s)	1824
Bst2UI	CCWGG	3 cut(s)	699, 1282, 1384
Bst4CI	ACNGT	5 cut(s)	609, 1417, 1493, 1535, 1639
Bst6I	CTCTTC	1 cut(s)	1761
BstACI	GRCGYC	1 cut(s)	936
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstAUI	TGTACA	2 cut(s)	1152, 1417
BstC8I	GCNNGC	4 cut(s)	69, 1025, 1486, 1933
BstDEI	CTNAG	8 cut(s)	32, 209, 273, 351, 685, 913, 981, 1079
BstDSI	CCRYGG	2 cut(s)	266, 1354
BstF5I	GGATG	3 cut(s)	24, 730, 1262
BstFNI	CGCG	2 cut(s)	7, 469
BstKTI	GATC	6 cut(s)	31, 317, 535, 1150, 1363, 1990
BstMAI	GTCTC	2 cut(s)	51, 1264
BstMBI	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 77, 510, 725, 765, 1063, 1937
BstNI	CCWGG	3 cut(s)	699, 1282, 1384
BstNSI	RCATGY	1 cut(s)	1259
BstSCI	CCNGG	3 cut(s)	697, 1280, 1382
BstSFI	CTRYAG	2 cut(s)	1449, 1950
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	2 cut(s)	7, 469
BstV1I	GCAGC	4 cut(s)	955, 1435, 1436, 1573
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	28
BstZ17I	GTATAC	1 cut(s)	1824
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	6 cut(s)	45, 271, 650, 1353, 1407, 1692
BtgI	CCRYGG	2 cut(s)	266, 1354
BtsCI	GGATG	3 cut(s)	24, 730, 1262
BtsIMutI	CAGTG	3 cut(s)	658, 754, 1413
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	4 cut(s)	69, 1025, 1486, 1933
CaiI	CAGNNNCTG	1 cut(s)	1491
CciI	TCATGA	1 cut(s)	781
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	8 cut(s)	9, 39, 44, 1219, 1238, 1277, 1351, 1405
CpoI	CGGWCCG	1 cut(s)	9
Csp6I	GTAC	8 cut(s)	283, 662, 929, 1117, 1153, 1418, 1782, 1996
CspI	CGGWCCG	1 cut(s)	9
CviQI	GTAC	8 cut(s)	283, 662, 929, 1117, 1153, 1418, 1782, 1996
DdeI	CTNAG	8 cut(s)	32, 209, 273, 351, 685, 913, 981, 1079
DpnI	GATC	6 cut(s)	30, 316, 534, 1149, 1362, 1989
DpnII	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
EaeI	YGGCCR	2 cut(s)	648, 1690
Eam1104I	CTCTTC	1 cut(s)	1761
EarI	CTCTTC	1 cut(s)	1761
Eco130I	CCWWGG	5 cut(s)	624, 769, 798, 1242, 1354
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	5 cut(s)	9, 39, 1219, 1238, 1277
Eco57I	CTGAAG	3 cut(s)	462, 642, 1836
Eco88I	CYCGRG	1 cut(s)	1731
EcoO109I	RGGNCCY	2 cut(s)	1219, 1405
EcoRI	GAATTC	2 cut(s)	432, 1474
EcoRII	CCWGG	3 cut(s)	697, 1280, 1382
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	5 cut(s)	624, 769, 798, 1242, 1354
ErhI	CCWWGG	5 cut(s)	624, 769, 798, 1242, 1354
FalI	AAGNNNNNCTT	6 cut(s)	617, 649, 915, 947, 1551, 1583
FaqI	GGGAC	1 cut(s)	1205
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	1987
FblI	GTMKAC	3 cut(s)	1186, 1665, 1823
Fnu4HI	GCNGC	4 cut(s)	969, 1425, 1449, 1587
FokI	GGATG	3 cut(s)	31, 737, 1249
Fsp4HI	GCNGC	4 cut(s)	969, 1425, 1449, 1587
FspBI	CTAG	4 cut(s)	222, 320, 456, 1892
GluI	GCNGC	4 cut(s)	969, 1425, 1449, 1587
GsaI	CCCAGC	1 cut(s)	1311
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	6 cut(s)	45, 271, 650, 1353, 1407, 1692
HapII	CCGG	2 cut(s)	42, 1876
Hin1I	GRCGYC	1 cut(s)	936
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	7 cut(s)	161, 416, 644, 893, 917, 1013, 1394
HpaII	CCGG	2 cut(s)	42, 1876
HphI	GGTGA	9 cut(s)	527, 803, 1124, 1157, 1175, 1340, 1370, 1538, 1562
Hpy188I	TCNGA	6 cut(s)	28, 442, 598, 688, 1365, 1905
Hpy188III	TCNNGA	8 cut(s)	222, 387, 581, 641, 782, 1809, 1921, 1980
HpyAV	CCTTC	9 cut(s)	111, 271, 514, 548, 554, 703, 818, 1418, 1973
HpyCH4III	ACNGT	5 cut(s)	609, 1417, 1493, 1535, 1639
HpyCH4IV	ACGT	2 cut(s)	936, 1050
HpyCH4V	TGCA	8 cut(s)	333, 530, 695, 1057, 1076, 1451, 1796, 1952
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 77, 510, 725, 765, 1063, 1937
HpyF3I	CTNAG	8 cut(s)	32, 209, 273, 351, 685, 913, 981, 1079
HpySE526I	ACGT	2 cut(s)	936, 1050
Hsp92I	GRCGYC	1 cut(s)	936
KflI	GGGWCCC	1 cut(s)	1219
KpnI	GGTACC	1 cut(s)	1785
Ksp22I	TGATCA	1 cut(s)	1987
Kzo9I	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
LmnI	GCTCC	2 cut(s)	1728, 1838
Lsp1109I	GCAGC	4 cut(s)	955, 1435, 1436, 1573
LweI	GCATC	3 cut(s)	715, 784, 1063
MaeI	CTAG	4 cut(s)	222, 320, 456, 1892
MaeII	ACGT	2 cut(s)	936, 1050
MaeIII	GTNAC	5 cut(s)	308, 976, 1132, 1297, 1550
MalI	GATC	6 cut(s)	30, 316, 534, 1149, 1362, 1989
MboI	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
MboII	GAAGA	3 cut(s)	126, 625, 1778
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	1692
MluCI	AATT	7 cut(s)	225, 432, 1177, 1377, 1474, 1603, 1942
MluNI	TGGCCA	1 cut(s)	1692
MlyI	GAGTC	2 cut(s)	425, 1022
MmeI	TCCRAC	1 cut(s)	847
Mox20I	TGGCCA	1 cut(s)	1692
MroXI	GAANNNNTTC	2 cut(s)	165, 229
MscI	TGGCCA	1 cut(s)	1692
MseI	TTAA	5 cut(s)	204, 299, 371, 1400, 1802
MslI	CAYNNNNRTG	3 cut(s)	786, 1125, 1200
Msp20I	TGGCCA	1 cut(s)	1692
MspI	CCGG	2 cut(s)	42, 1876
MspR9I	CCNGG	3 cut(s)	699, 1282, 1384
MvaI	CCWGG	3 cut(s)	699, 1282, 1384
MvnI	CGCG	2 cut(s)	7, 469
MwoI	GCNNNNNNNGC	7 cut(s)	42, 77, 510, 725, 765, 1063, 1937
NcoI	CCATGG	1 cut(s)	1354
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
NlaIV	GGNNCC	7 cut(s)	46, 883, 1220, 1221, 1240, 1279, 1783
NmuCI	GTSAC	2 cut(s)	308, 1550
NspI	RCATGY	1 cut(s)	1259
PaeR7I	CTCGAG	1 cut(s)	1731
PagI	TCATGA	1 cut(s)	781
PasI	CCCWGGG	1 cut(s)	1383
PciI	ACATGT	1 cut(s)	1255
PcsI	WCGNNNNNNNCGW	1 cut(s)	933
PdmI	GAANNNNTTC	2 cut(s)	165, 229
PfeI	GAWTC	5 cut(s)	161, 644, 893, 917, 1394
Pfl23II	CGTACG	1 cut(s)	1995
PkrI	GCNGC	4 cut(s)	970, 1426, 1450, 1588
PleI	GAGTC	2 cut(s)	424, 1021
PpsI	GAGTC	2 cut(s)	424, 1021
PpuMI	RGGWCCY	1 cut(s)	1219
PscI	ACATGT	1 cut(s)	1255
Psp5II	RGGWCCY	1 cut(s)	1219
Psp6I	CCWGG	3 cut(s)	697, 1280, 1382
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	3 cut(s)	697, 1280, 1382
PspLI	CGTACG	1 cut(s)	1995
PspN4I	GGNNCC	7 cut(s)	46, 883, 1220, 1221, 1240, 1279, 1783
PspPI	GGNCC	8 cut(s)	9, 39, 44, 1219, 1238, 1277, 1351, 1405
PspPPI	RGGWCCY	1 cut(s)	1219
PspXI	VCTCGAGB	1 cut(s)	1731
PstI	CTGCAG	2 cut(s)	1453, 1954
PstNI	CAGNNNCTG	1 cut(s)	1491
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	8 cut(s)	284, 663, 930, 1118, 1154, 1419, 1783, 1997
RsaNI	GTAC	8 cut(s)	283, 662, 929, 1117, 1153, 1418, 1782, 1996
RseI	CAYNNNNRTG	3 cut(s)	786, 1125, 1200
Rsr2I	CGGWCCG	1 cut(s)	9
RsrII	CGGWCCG	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	204, 299, 371, 1400, 1802
SatI	GCNGC	4 cut(s)	969, 1425, 1449, 1587
Sau3AI	GATC	6 cut(s)	28, 314, 532, 1147, 1360, 1987
Sau96I	GGNCC	8 cut(s)	9, 39, 44, 1219, 1238, 1277, 1351, 1405
SchI	GAGTC	2 cut(s)	425, 1022
ScrFI	CCNGG	3 cut(s)	699, 1282, 1384
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	715, 784, 1063
SfcI	CTRYAG	2 cut(s)	1449, 1950
Sfr274I	CTCGAG	1 cut(s)	1731
SinI	GGWCC	5 cut(s)	9, 39, 1219, 1238, 1277
SlaI	CTCGAG	1 cut(s)	1731
SmiMI	CAYNNNNRTG	3 cut(s)	786, 1125, 1200
SmlI	CTYRAG	3 cut(s)	104, 1707, 1731
SmoI	CTYRAG	3 cut(s)	104, 1707, 1731
SpeI	ACTAGT	1 cut(s)	1891
Sse9I	AATT	7 cut(s)	225, 432, 1177, 1377, 1474, 1603, 1942
SsiI	CCGC	3 cut(s)	7, 469, 1935
SspMI	CTAG	4 cut(s)	222, 320, 456, 1892
StyD4I	CCNGG	3 cut(s)	697, 1280, 1382
StyI	CCWWGG	5 cut(s)	624, 769, 798, 1242, 1354
TaaI	ACNGT	5 cut(s)	609, 1417, 1493, 1535, 1639
TaiI	ACGT	2 cut(s)	939, 1053
TaqI	TCGA	3 cut(s)	63, 1612, 1732
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	7 cut(s)	225, 432, 1177, 1377, 1474, 1603, 1942
TatI	WGTACW	3 cut(s)	661, 1152, 1417
TfiI	GAWTC	5 cut(s)	161, 644, 893, 917, 1394
Tru1I	TTAA	5 cut(s)	204, 299, 371, 1400, 1802
Tru9I	TTAA	5 cut(s)	204, 299, 371, 1400, 1802
TscAI	CASTG	3 cut(s)	658, 754, 1420
TseFI	GTSAC	2 cut(s)	308, 1550
TseI	GCWGC	4 cut(s)	968, 1424, 1448, 1586
Tsp45I	GTSAC	2 cut(s)	308, 1550
TspDTI	ATGAA	9 cut(s)	174, 360, 536, 573, 722, 802, 1218, 1485, 1955
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	3 cut(s)	658, 754, 1420
VneI	GTGCAC	1 cut(s)	693
VpaK11BI	GGWCC	5 cut(s)	9, 39, 1219, 1238, 1277
XapI	RAATTY	2 cut(s)	432, 1474
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	1259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1759
XhoI	CTCGAG	1 cut(s)	1731
XmiI	GTMKAC	3 cut(s)	1186, 1665, 1823
XmnI	GAANNNNTTC	2 cut(s)	165, 229
XspI	CTAG	4 cut(s)	222, 320, 456, 1892
ZraI	GACGTC	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.