Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

20238186 .. 20248742

Gene Structure 10557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G268000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3327 bp

ATGTCGCGGACTGATAGGATGCCTTCCGATCTTAGCAGGACCGGGCCGGTCGAAAGAGACATCGAGCAGGCTATTACTGCTCTGAAGAAGGGGGCATACTTGCTCAAGTATGGAAGAAGGGGGAAGCCTAAGTTTTGTCCCTTCCGTCTTTCCAATGATGAATCAGTTCTAATATGGTTCTCTGGGAAAGAGGAAAAGCACCTTAAGCTAAGCCACGTGTCCAGAATTATTACTGGGCAACGCACCCCAATCTTTCAAAGGTATCCACGCCTTGAGAAGGAGTATCAGTCATTTTCTTTAATATATAATGACAGATCACTAGATTTGATTTGTAAGGATAAAGATGAAGCTGATGTATGGTTTAGTGGTTTAAAAGCATTGATATCCCGCAGCCATCATCGAAAATGGAGAACAGAGTCAAGGAGTGATGGAATTCCATCTGAAGCCAATAGTCCTAGAACATACACGCGTAGAAGTTCTCCTCTTAATTCTCCATTTGGTAGTAATGATAGCTTGCAGAAGGATAGTGCGGATCACCTTCGCCTTCATAGTCCATATGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTTATACTGTATGCTGTTCCTCCCAAGGGTTTCTTCCCTTCAGATTCAGCCAGTGGTTCAGTACATTCTGTGTCATCTGGTGGCTCAGATAGCGTACATGGGCAGATGAAGGCAATGGCAATGGATGCTTTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGATCTGGACATGATGATGGTGATGCCTTGGGGGATGTTTTCATGTGGGGAGAAGGCACAGGAGATGGTGTTGTGGGTGGTGGTTCTCATAGAGTTGGAAGTAGTAATGGTGCAAAAATGGATTCTTTGTTGCCCAAAGCCTTAGAATCTGCAGTTGTACTTGATGTCCAAAACATCGCCTGTGGTGGACGACATGCTGCTTTAGTGACTAAGCAAGGGGAGATTTTCTCTTGGGGAGAGGAATCTGGAGGCAGGCTTGGGCATGGTGTTGATGTTGACGTTTTGCATCCAAAGCTCATTGATGCACTTAGTAATATGAACATTGATCTTGTTGCTTGTGGTGAGTACCATACTTGTGCTGTTACCCTTTCTGGTGATCTGTACACATGGGGTGATGGAACTTACAATTTTGGTCTACTTGGACATGGAAATGAAGTGAGTCACTGGGTGCCCAAAAAGGTGAATGGACCTTTGGAGGGTATACATGTCTCATCAATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCGGCTGGGCAATTGTTTACTTTTGGTGATGGTACTTTTGGTGTTCTAGGCCATGGAGATCGAAAAAGTGTTTCAATTCCCCGGGAAGTGGAAAACTTAAAGGGCCTTCGCACTGTGCGAGCAGCTTGTGGTGTTTGGCATACTGCTGCCGTTGTAGAAGTCATGGTTGGGAACTCAAGTTCCAGTAACTGTTCTTTAGGAAAGTTGTTCACTTGGGGAGATGGTGATAAGGGTAGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTAGAACCCAACTTTTGTCGAGTTGCTTGTGGACATAGTATGACAGTTGCACTTACAACGTCTGGTCATGTCTACACAATGGGCAGTCCTGTTTATGGTCAGTTAGGAAATCCTCAAGCTGATGGAAAGCTCCCCACTCGAGTTGAGGGAAAGCTCTCGAAGAGTCGTGTGGATGAGATTGCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAAGTTTATACTTGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAATATAGATGATCGGAGTTCCCCAACATTGGTTGAAGCTCTGAAAGATAAACAAGTCAAAAGTATTGCTTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCAGGAGTTGATCAGTCAATGTGTTCGGGTTGCCGCCTTCCATTTAACTTTAAAAGAAAGCGCCATAATTGTTATAACTGTGGGCTTGTGTTTTGTCATTCGTGCAGCAGTAAGAAGTCACTTAAGGCTTCTATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAACTGCTTTAATAAACTGAGAAAAGCTGCTGAAACTGATACTTCATCACAAACTTCTATGAGCAGAAGAGGAAGTATCAATCAGGGGTCAAATGAGCTTCTTGATAAAGATGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCCAGATTTTCTTCTATGGAATCTCTGAAGCATGTGGAAACCCGTTCTTCAAAGAAAAATAAGAAACTAGAATTTAACAGCAGTCGAGTCTCACCTGTTCCAAATGGAGGTTCACAGTGGGGAGCTCTCAATATTTCTAAATCTTTTAATCCAGTATTTGGGTCATCGAAGAAGTTTTTCTCAGCTTCTGTCCCTGGATCAAGAATTGTTTCTCGAGCTACATCCCCAATTTCGAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTGGGTGGACTTACATCACCAAAGATTGTTGTAGATGATGCTAAAAGGACAAATGAAAGCCTTAGCCAGGAGGTTATCAAACTGAGATCACAGGTTGAAAGTCTTACTCGAAAAGCCCAACTACAAGAGGTTGAGCTGGAAAGAACAACTAAGCAGCTGAAGGAAGCAATAGCAATTGCGGGTGCAGAGACTGGAAAATGCAAAGCAGCAAAGGAAGTGATCCAGTCACTTACCGCCCAATTGAAGGACATGGCTGAAAGGCTGCCTGTTGGAGCAGTGCGGAATATTAAATCACCTTCTCTTGCTTCTTCCTTGGGTTCGGATCCTTCCAATGAAGTTTCTTGTGCTTCAACTGACCGATTGAATGGTCAAGTAACATGCCAAGAACCAGACTCCAATGGATCAAATAGCCAGTTGCTTTCTAACGGGTCCAGCACCACCGGTACCCGCAGTTCAGGTCACAACAAACAAGTCCATCCCGATGTAGCAACTAGAAACGGGAACAGAATTAAAGAAAACGAATCTCGTCATGAATCTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTGACTTCCCTACCAGGAGGTGCAAAGGATCTCAAGCGAGTCCGCTTCAGTCGGAAGCGATTTAGTGAGAAACAAGCAGAAGATTGGTGGGCAGAGAACCGGGCAAGAGTGCATGAACAATACAATGTGCGCATGGTAGACAAGTCTAGTGTAGGCGTCGGGAGTGAGGACTTGGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1109

Amino Acids

120.03

Weight (kDa)

9.2

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2052
Acc16I	TGCGCA	1 cut(s)	3275
Acc65I	GGTACC	1 cut(s)	3011
AccB1I	GGYRCC	5 cut(s)	1219, 1781, 2113, 2529, 3011
AccB7I	CCANNNNNTGG	1 cut(s)	2450
AccI	GTMKAC	4 cut(s)	1186, 1252, 1665, 3282
AccII	CGCG	2 cut(s)	7, 469
AciI	CCGC	9 cut(s)	7, 388, 530, 2011, 2747, 2802, 2848, 3016, 3187
AclWI	GGATC	8 cut(s)	540, 781, 2497, 2782, 2885, 2898, 2977, 3180
AcsI	RAATTY	2 cut(s)	432, 2363
AcuI	CTGAAG	7 cut(s)	104, 462, 624, 1836, 2339, 2747, 3175
AcvI	CACGTG	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	2530, 3300
AdeI	CACNNNGTG	1 cut(s)	1219
AfaI	GTAC	7 cut(s)	663, 696, 930, 1118, 1154, 1336, 3013
AflII	CTTAAG	2 cut(s)	203, 2099
AflIII	ACRYGT	3 cut(s)	216, 467, 1255
AgeI	ACCGGT	1 cut(s)	3008
AgsI	TTSAA	9 cut(s)	257, 1377, 1809, 1898, 2343, 2666, 2812, 2919, 2932
AjnI	CCWGG	5 cut(s)	1280, 2485, 2634, 3127, 3157
AjuI	GAANNNNNNNTTGG	8 cut(s)	617, 649, 1226, 1258, 1452, 1484, 2386, 2418
AloI	GAACNNNNNNTCC	4 cut(s)	1465, 1466, 1497, 1498
Alw21I	GWGCWC	1 cut(s)	2419
Alw26I	GTCTC	4 cut(s)	51, 1264, 2386, 2750
AlwI	GGATC	8 cut(s)	540, 781, 2497, 2782, 2885, 2898, 2977, 3180
AlwNI	CAGNNNCTG	3 cut(s)	1491, 2480, 2759
Ama87I	CYCGRG	3 cut(s)	1383, 1731, 2505
AoxI	GGCC	3 cut(s)	44, 1351, 1405
ApoI	RAATTY	2 cut(s)	432, 2363
AsiGI	ACCGGT	1 cut(s)	3008
Asp700I	GAANNNNTTC	3 cut(s)	165, 2468, 2500
Asp718I	GGTACC	1 cut(s)	3011
AspLEI	GCGC	3 cut(s)	2040, 2532, 3276
AspS9I	GGNCC	6 cut(s)	39, 44, 1238, 1277, 1405, 2997
AsuC2I	CCSGG	4 cut(s)	43, 1384, 1385, 3245
AvaI	CYCGRG	3 cut(s)	1383, 1731, 2505
AvaII	GGWCC	4 cut(s)	39, 1238, 1277, 2997
BaeGI	GKGCMC	1 cut(s)	1224
BamHI	GGATCC	1 cut(s)	2890
BanI	GGYRCC	5 cut(s)	1219, 1781, 2113, 2529, 3011
BanII	GRGCYC	1 cut(s)	2419
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BauI	CACGAG	1 cut(s)	2280
BbrPI	CACGTG	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	2419
BceAI	ACGGC	1 cut(s)	1436
BciT130I	CCWGG	5 cut(s)	1282, 2487, 2636, 3129, 3159
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	1987
BcnI	CCSGG	4 cut(s)	43, 1384, 1385, 3245
BcoDI	GTCTC	4 cut(s)	51, 1264, 2386, 2750
BfaI	CTAG	6 cut(s)	320, 456, 1349, 2360, 3060, 3291
BfmI	CTRYAG	2 cut(s)	921, 1950
BfoI	RGCGCY	2 cut(s)	2041, 2533
BfrI	CTTAAG	2 cut(s)	203, 2099
BfuI	GTATCC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	2276
BlpI	GCTNAGC	1 cut(s)	209
Bme1390I	CCNGG	9 cut(s)	43, 1282, 1384, 1385, 2487, 2636, 3129, 3159, 3245
Bme18I	GGWCC	4 cut(s)	39, 1238, 1277, 2997
BmeT110I	CYCGRG	3 cut(s)	1383, 1731, 2505
BmgT120I	GGNCC	6 cut(s)	39, 44, 1238, 1277, 1405, 2997
BmiI	GGNNCC	8 cut(s)	1221, 1279, 1783, 2115, 2531, 2892, 2998, 3013
BmrFI	CCNGG	9 cut(s)	43, 1282, 1384, 1385, 2487, 2636, 3129, 3159, 3245
BmrI	ACTGGG	2 cut(s)	243, 1225
BmsI	GCATC	6 cut(s)	9, 715, 784, 1063, 1066, 2596
BmuI	ACTGGG	2 cut(s)	243, 1225
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	1 cut(s)	2630
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	5 cut(s)	89, 293, 1462, 1692, 3161
BpuMI	CCSGG	4 cut(s)	43, 1384, 1385, 3245
BsaAI	YACGTR	1 cut(s)	217
BsaHI	GRCGYC	2 cut(s)	2530, 3300
BsaWI	WCCGGW	1 cut(s)	3008
BsaXI	ACNNNNNCTCC	6 cut(s)	272, 302, 825, 855, 2545, 2575
Bse118I	RCCGGY	2 cut(s)	46, 3008
Bse1I	ACTGG	9 cut(s)	238, 651, 747, 1220, 1485, 2444, 2764, 2791, 2980
Bse3DI	GCAATG	2 cut(s)	720, 726
BseBI	CCWGG	5 cut(s)	1282, 2487, 2636, 3129, 3159
BseGI	GGATG	7 cut(s)	24, 730, 811, 1057, 1771, 2513, 3043
BseMI	GCAATG	2 cut(s)	720, 726
BseMII	CTCAG	4 cut(s)	699, 2156, 2487, 2642
BseNI	ACTGG	9 cut(s)	238, 651, 747, 1220, 1485, 2444, 2764, 2791, 2980
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	1224
BseYI	CCCAGC	2 cut(s)	1307, 2534
BsgI	GTGCAG	2 cut(s)	2101, 2772
Bsh1236I	CGCG	2 cut(s)	7, 469
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	46, 1353, 1407
BshNI	GGYRCC	5 cut(s)	1219, 1781, 2113, 2529, 3011
BshTI	ACCGGT	1 cut(s)	3008
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	2419
BsiHKCI	CYCGRG	3 cut(s)	1383, 1731, 2505
BsiSI	CCGG	5 cut(s)	42, 47, 1384, 3009, 3244
BslFI	GGGAC	2 cut(s)	123, 2468
BsmAI	GTCTC	4 cut(s)	51, 1264, 2386, 2750
BsmFI	GGGAC	2 cut(s)	123, 2468
BsnI	GGCC	3 cut(s)	46, 1353, 1407
BsoBI	CYCGRG	3 cut(s)	1383, 1731, 2505
Bsp1286I	GDGCHC	2 cut(s)	1224, 2419
Bsp1407I	TGTACA	1 cut(s)	1152
Bsp1720I	GCTNAGC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	1354
BspACI	CCGC	9 cut(s)	7, 388, 530, 2011, 2747, 2802, 2848, 3016, 3187
BspANI	GGCC	3 cut(s)	46, 1353, 1407
BspCNI	CTCAG	4 cut(s)	698, 2157, 2486, 2643
BspFNI	CGCG	2 cut(s)	7, 469
BspHI	TCATGA	1 cut(s)	3097
BspLI	GGNNCC	8 cut(s)	1221, 1279, 1783, 2115, 2531, 2892, 2998, 3013
BspMAI	CTGCAG	2 cut(s)	925, 1954
BspPI	GGATC	8 cut(s)	540, 781, 2497, 2782, 2885, 2898, 2977, 3180
BspT107I	GGYRCC	5 cut(s)	1219, 1781, 2113, 2529, 3011
BspTI	CTTAAG	2 cut(s)	203, 2099
BsrDI	GCAATG	2 cut(s)	720, 726
BsrFI	RCCGGY	2 cut(s)	46, 3008
BsrGI	TGTACA	1 cut(s)	1152
BsrI	ACTGG	9 cut(s)	238, 651, 747, 1220, 1485, 2444, 2764, 2791, 2980
BssAI	RCCGGY	2 cut(s)	46, 3008
BssNAI	GTATAC	1 cut(s)	1253
BssNI	GRCGYC	2 cut(s)	2530, 3300
BssSI	CACGAG	1 cut(s)	2280
BssT1I	CCWWGG	5 cut(s)	624, 769, 798, 1354, 2880
Bst1107I	GTATAC	1 cut(s)	1253
Bst2BI	CACGAG	1 cut(s)	2280
Bst2UI	CCWGG	5 cut(s)	1282, 2487, 2636, 3129, 3159
Bst4CI	ACNGT	6 cut(s)	609, 1417, 1493, 1639, 2057, 2409
Bst6I	CTCTTC	2 cut(s)	1748, 2209
BstACI	GRCGYC	2 cut(s)	2530, 3300
BstAFI	CTTAAG	2 cut(s)	203, 2099
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	1152
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	5 cut(s)	69, 515, 1025, 1422, 3322
BstDSI	CCRYGG	1 cut(s)	1354
BstENI	CCTNNNNNAGG	2 cut(s)	275, 2633
BstF5I	GGATG	7 cut(s)	24, 730, 811, 1057, 1771, 2513, 3043
BstFNI	CGCG	2 cut(s)	7, 469
BstH2I	RGCGCY	2 cut(s)	2041, 2533
BstHHI	GCGC	3 cut(s)	2040, 2532, 3276
BstMAI	GTCTC	4 cut(s)	51, 1264, 2386, 2750
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	5 cut(s)	1282, 2487, 2636, 3129, 3159
BstNSI	RCATGY	4 cut(s)	968, 1259, 2327, 2949
BstSCI	CCNGG	9 cut(s)	41, 1280, 1382, 1383, 2485, 2634, 3127, 3157, 3243
BstSFI	CTRYAG	2 cut(s)	921, 1950
BstSLI	GKGCMC	1 cut(s)	1224
BstUI	CGCG	2 cut(s)	7, 469
BstX2I	RGATCY	4 cut(s)	773, 2276, 2890, 3172
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	4 cut(s)	773, 2276, 2890, 3172
BstZ17I	GTATAC	1 cut(s)	1253
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	46, 1353, 1407
BtgI	CCRYGG	1 cut(s)	1354
BtgZI	GCGATG	1 cut(s)	931
BtsCI	GGATG	7 cut(s)	24, 730, 811, 1057, 1771, 2513, 3043
BtsI	GCAGTG	1 cut(s)	2850
BtsIMutI	CAGTG	7 cut(s)	658, 754, 1213, 1413, 2414, 2850, 3143
Cac8I	GCNNGC	5 cut(s)	69, 515, 1025, 1422, 3322
CaiI	CAGNNNCTG	3 cut(s)	1491, 2480, 2759
CciI	TCATGA	1 cut(s)	3097
CfoI	GCGC	3 cut(s)	2040, 2532, 3276
Cfr10I	RCCGGY	2 cut(s)	46, 3008
Cfr13I	GGNCC	6 cut(s)	39, 44, 1238, 1277, 1405, 2997
Cfr9I	CCCGGG	1 cut(s)	1383
CseI	GACGC	1 cut(s)	3289
Csp6I	GTAC	7 cut(s)	662, 695, 929, 1117, 1153, 1335, 3012
CspAI	ACCGGT	1 cut(s)	3008
CspCI	CAANNNNNGTGG	2 cut(s)	1717, 1752
CviQI	GTAC	7 cut(s)	662, 695, 929, 1117, 1153, 1335, 3012
DinI	GGCGCC	1 cut(s)	2531
DraI	TTTAAA	2 cut(s)	372, 2029
DraIII	CACNNNGTG	1 cut(s)	1219
Eam1104I	CTCTTC	2 cut(s)	1748, 2209
EarI	CTCTTC	2 cut(s)	1748, 2209
Ecl136II	GAGCTC	1 cut(s)	2417
Eco130I	CCWWGG	5 cut(s)	624, 769, 798, 1354, 2880
Eco24I	GRGCYC	1 cut(s)	2419
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	4 cut(s)	39, 1238, 1277, 2997
Eco53kI	GAGCTC	1 cut(s)	2417
Eco57I	CTGAAG	7 cut(s)	104, 462, 624, 1836, 2339, 2747, 3175
Eco72I	CACGTG	1 cut(s)	217
Eco88I	CYCGRG	3 cut(s)	1383, 1731, 2505
EcoICRI	GAGCTC	1 cut(s)	2417
EcoNI	CCTNNNNNAGG	2 cut(s)	275, 2633
EcoO109I	RGGNCCY	1 cut(s)	1405
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	5 cut(s)	1280, 2485, 2634, 3127, 3157
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	5 cut(s)	624, 769, 798, 1354, 2880
EcoT38I	GRGCYC	1 cut(s)	2419
EgeI	GGCGCC	1 cut(s)	2531
EheI	GGCGCC	1 cut(s)	2531
ErhI	CCWWGG	5 cut(s)	624, 769, 798, 1354, 2880
FalI	AAGNNNNNCTT	6 cut(s)	617, 649, 1551, 1583, 1915, 1947
FaqI	GGGAC	2 cut(s)	123, 2468
FauI	CCCGC	3 cut(s)	395, 2740, 3023
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	1987
FblI	GTMKAC	4 cut(s)	1186, 1252, 1665, 3282
FokI	GGATG	7 cut(s)	31, 737, 818, 1044, 1778, 2500, 3030
FriOI	GRGCYC	1 cut(s)	2419
FspAI	RTGCGCAY	1 cut(s)	3275
FspBI	CTAG	6 cut(s)	320, 456, 1349, 2360, 3060, 3291
FspI	TGCGCA	1 cut(s)	3275
GlaI	GCGC	3 cut(s)	2039, 2531, 3275
GsaI	CCCAGC	2 cut(s)	1311, 2538
GsuI	CTGGAG	1 cut(s)	1038
HaeII	RGCGCY	2 cut(s)	2041, 2533
HaeIII	GGCC	3 cut(s)	46, 1353, 1407
HapII	CCGG	5 cut(s)	42, 47, 1384, 3009, 3244
HgaI	GACGC	1 cut(s)	3289
HhaI	GCGC	3 cut(s)	2040, 2532, 3276
Hin1I	GRCGYC	2 cut(s)	2530, 3300
Hin6I	GCGC	3 cut(s)	2038, 2530, 3274
HinP1I	GCGC	3 cut(s)	2038, 2530, 3274
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HpaII	CCGG	5 cut(s)	42, 47, 1384, 3009, 3244
Hpy99I	CGWCG	1 cut(s)	3305
HpyCH4III	ACNGT	6 cut(s)	609, 1417, 1493, 1639, 2057, 2409
HpyCH4IV	ACGT	3 cut(s)	216, 1050, 1652
HpySE526I	ACGT	3 cut(s)	216, 1050, 1652
Hsp92I	GRCGYC	2 cut(s)	2530, 3300
HspAI	GCGC	3 cut(s)	2038, 2530, 3274
KasI	GGCGCC	1 cut(s)	2529
KpnI	GGTACC	1 cut(s)	3015
Ksp22I	TGATCA	1 cut(s)	1987
LmnI	GCTCC	4 cut(s)	1728, 1838, 2414, 2840
LweI	GCATC	6 cut(s)	9, 715, 784, 1063, 1066, 2596
MaeI	CTAG	6 cut(s)	320, 456, 1349, 2360, 3060, 3291
MaeII	ACGT	3 cut(s)	216, 1050, 1652
MfeI	CAATTG	3 cut(s)	1313, 2742, 2807
MflI	RGATCY	4 cut(s)	773, 2276, 2890, 3172
MhlI	GDGCHC	2 cut(s)	1224, 2419
MluI	ACGCGT	1 cut(s)	467
Mly113I	GGCGCC	1 cut(s)	2530
MlyI	GAGTC	6 cut(s)	425, 1219, 1765, 2388, 2954, 3192
MmeI	TCCRAC	4 cut(s)	847, 2588, 2818, 3176
MroXI	GAANNNNTTC	3 cut(s)	165, 2468, 2500
MslI	CAYNNNNRTG	4 cut(s)	786, 1125, 1200, 3048
MspA1I	CMGCKG	2 cut(s)	1292, 2725
MspCI	CTTAAG	2 cut(s)	203, 2099
MspI	CCGG	5 cut(s)	42, 47, 1384, 3009, 3244
MspR9I	CCNGG	9 cut(s)	43, 1282, 1384, 1385, 2487, 2636, 3129, 3159, 3245
MunI	CAATTG	3 cut(s)	1313, 2742, 2807
MvaI	CCWGG	5 cut(s)	1282, 2487, 2636, 3129, 3159
MvnI	CGCG	2 cut(s)	7, 469
NarI	GGCGCC	1 cut(s)	2530
NciI	CCSGG	4 cut(s)	43, 1384, 1385, 3245
NcoI	CCATGG	1 cut(s)	1354
NdeI	CATATG	1 cut(s)	556
NlaIV	GGNNCC	8 cut(s)	1221, 1279, 1783, 2115, 2531, 2892, 2998, 3013
NmeAIII	GCCGAG	1 cut(s)	1283
NmuCI	GTSAC	6 cut(s)	976, 1211, 1550, 2094, 2793, 3026
NsbI	TGCGCA	1 cut(s)	3275
NspI	RCATGY	4 cut(s)	968, 1259, 2327, 2949
PaeR7I	CTCGAG	2 cut(s)	1731, 2505
PagI	TCATGA	1 cut(s)	3097
PciI	ACATGT	1 cut(s)	1255
PcsI	WCGNNNNNNNCGW	1 cut(s)	1417
PdmI	GAANNNNTTC	3 cut(s)	165, 2468, 2500
PfeI	GAWTC	9 cut(s)	161, 644, 893, 917, 1013, 2270, 2312, 3089, 3101
PflMI	CCANNNNNTGG	1 cut(s)	2450
PinAI	ACCGGT	1 cut(s)	3008
PleI	GAGTC	6 cut(s)	424, 1218, 1764, 2387, 2954, 3191
PluTI	GGCGCC	1 cut(s)	2533
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	6 cut(s)	424, 1218, 1764, 2387, 2954, 3191
Ppu21I	YACGTR	1 cut(s)	217
PscI	ACATGT	1 cut(s)	1255
PsiI	TTATAA	1 cut(s)	2052
Psp124BI	GAGCTC	1 cut(s)	2419
Psp6I	CCWGG	5 cut(s)	1280, 2485, 2634, 3127, 3157
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	1307, 2534
PspGI	CCWGG	5 cut(s)	1280, 2485, 2634, 3127, 3157
PspN4I	GGNNCC	8 cut(s)	1221, 1279, 1783, 2115, 2531, 2892, 2998, 3013
PspPI	GGNCC	6 cut(s)	39, 44, 1238, 1277, 1405, 2997
PspXI	VCTCGAGB	1 cut(s)	1731
PsrI	GAACNNNNNNTAC	2 cut(s)	3004, 3036
PstI	CTGCAG	2 cut(s)	925, 1954
PstNI	CAGNNNCTG	3 cut(s)	1491, 2480, 2759
PsuI	RGATCY	4 cut(s)	773, 2276, 2890, 3172
PvuII	CAGCTG	2 cut(s)	1292, 2725
RsaI	GTAC	7 cut(s)	663, 696, 930, 1118, 1154, 1336, 3013
RsaNI	GTAC	7 cut(s)	662, 695, 929, 1117, 1153, 1335, 3012
RseI	CAYNNNNRTG	4 cut(s)	786, 1125, 1200, 3048
SacI	GAGCTC	1 cut(s)	2419
Sau96I	GGNCC	6 cut(s)	39, 44, 1238, 1277, 1405, 2997
SchI	GAGTC	6 cut(s)	425, 1219, 1765, 2388, 2954, 3192
ScrFI	CCNGG	9 cut(s)	43, 1282, 1384, 1385, 2487, 2636, 3129, 3159, 3245
SduI	GDGCHC	2 cut(s)	1224, 2419
SfaNI	GCATC	6 cut(s)	9, 715, 784, 1063, 1066, 2596
SfcI	CTRYAG	2 cut(s)	921, 1950
SfoI	GGCGCC	1 cut(s)	2531
Sfr274I	CTCGAG	2 cut(s)	1731, 2505
SinI	GGWCC	4 cut(s)	39, 1238, 1277, 2997
SlaI	CTCGAG	2 cut(s)	1731, 2505
SmaI	CCCGGG	1 cut(s)	1385
SmiMI	CAYNNNNRTG	4 cut(s)	786, 1125, 1200, 3048
SmlI	CTYRAG	9 cut(s)	104, 203, 272, 1477, 1707, 1731, 2099, 2505, 3176
SmoI	CTYRAG	9 cut(s)	104, 203, 272, 1477, 1707, 1731, 2099, 2505, 3176
SsiI	CCGC	9 cut(s)	7, 388, 530, 2011, 2747, 2802, 2848, 3016, 3187
SspDI	GGCGCC	1 cut(s)	2529
SspI	AATATT	2 cut(s)	2425, 2854
SspMI	CTAG	6 cut(s)	320, 456, 1349, 2360, 3060, 3291
SstI	GAGCTC	1 cut(s)	2419
StyD4I	CCNGG	9 cut(s)	41, 1280, 1382, 1383, 2485, 2634, 3127, 3157, 3243
StyI	CCWWGG	5 cut(s)	624, 769, 798, 1354, 2880
TaaI	ACNGT	6 cut(s)	609, 1417, 1493, 1639, 2057, 2409
TaiI	ACGT	3 cut(s)	219, 1053, 1655
TaqII	GACCGA	1 cut(s)	2940
TatI	WGTACW	3 cut(s)	661, 928, 1152
TauI	GCSGC	1 cut(s)	2013
TfiI	GAWTC	9 cut(s)	161, 644, 893, 917, 1013, 2270, 2312, 3089, 3101
TscAI	CASTG	7 cut(s)	658, 754, 1220, 1420, 2414, 2850, 3150
TseFI	GTSAC	6 cut(s)	976, 1211, 1550, 2094, 2793, 3026
Tsp45I	GTSAC	6 cut(s)	976, 1211, 1550, 2094, 2793, 3026
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	1383
TspRI	CASTG	7 cut(s)	658, 754, 1220, 1420, 2414, 2850, 3150
Van91I	CCANNNNNTGG	1 cut(s)	2450
Vha464I	CTTAAG	2 cut(s)	203, 2099
VpaK11BI	GGWCC	4 cut(s)	39, 1238, 1277, 2997
XagI	CCTNNNNNAGG	2 cut(s)	275, 2633
XapI	RAATTY	2 cut(s)	432, 2363
XceI	RCATGY	4 cut(s)	968, 1259, 2327, 2949
XhoI	CTCGAG	2 cut(s)	1731, 2505
XmaI	CCCGGG	1 cut(s)	1383
XmiI	GTMKAC	4 cut(s)	1186, 1252, 1665, 3282
XmnI	GAANNNNTTC	3 cut(s)	165, 2468, 2500
XspI	CTAG	6 cut(s)	320, 456, 1349, 2360, 3060, 3291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.