Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

51255852 .. 51264486

Gene Structure 8635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3363 bp

ATGCAGTTAGGGTTTTTGCGAGGAGGAAAAGTAATGTCGCGGACGGATAGGATGGCTTCTGATCTTAGCAGGACCACCGGTCCGGTCGAAAGAGACATCGAGCAGGCCATTACTGCTTTAAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCCGTTCTAATATGGTTCTCAGGGAAGGAGGAAAAACACCTTAAACTCAGCCATGTTTCTAGAATTATATCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATTTATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGCTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAGTTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAGGCAATGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTAGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTCGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCATTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATCATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAGCAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTGCTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACATCCAGTTGCTTTCTAATGGATCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCGGACTTAGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGATGAGGCGGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTTAGTGAGAAACAAGCAGAACAATGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1120

Amino Acids

120.93

Weight (kDa)

9.16

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	34 - 140	2e-09	Pleckstrin homology domain
WD40_RLD	PF25390	281 - 664	6.2e-80	RCC1-like domain
RCC1	PF00415	341 - 390	7e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	379 - 404	1e-05	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	393 - 445	5.5e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	432 - 460	8.1e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	449 - 497	1.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	513 - 561	7.2e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	549 - 577	7.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	564 - 613	6.6e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	618 - 665	4.3e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	669 - 735	1.8e-15	FYVE zinc finger
BRX_N	PF13713	932 - 966	1.8e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	972 - 1040	4.5e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1046 - 1101	1.9e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	342, 2088
AatII	GACGTC	1 cut(s)	975
AccB1I	GGYRCC	3 cut(s)	1817, 2149, 2565
AccB7I	CCANNNNNTGG	1 cut(s)	2486
AccI	GTMKAC	5 cut(s)	1222, 1288, 1701, 3318, 3348
AccII	CGCG	1 cut(s)	40
AciI	CCGC	6 cut(s)	40, 181, 2047, 2814, 3052, 3164
AclWI	GGATC	8 cut(s)	1628, 2520, 2533, 2921, 3013, 3027, 3040, 3216
AcoI	YGGCCR	2 cut(s)	1693, 1726
AcsI	RAATTY	4 cut(s)	523, 1806, 2399, 3079
AcuI	CTGAAG	4 cut(s)	498, 660, 2375, 3211
AcyI	GRCGYC	2 cut(s)	972, 2566
AfaI	GTAC	7 cut(s)	146, 699, 732, 966, 1154, 1190, 3040
AflII	CTTAAG	1 cut(s)	1436
AflIII	ACRYGT	2 cut(s)	1291, 2369
AgeI	ACCGGT	1 cut(s)	77
AhdI	GACNNNNNGTC	1 cut(s)	78
AjnI	CCWGG	6 cut(s)	1316, 1418, 1550, 2521, 2673, 3193
AjuI	GAANNNNNNNTTGG	8 cut(s)	653, 685, 1488, 1520, 2422, 2454, 2489, 2521
Alw21I	GWGCWC	2 cut(s)	2455, 2698
Alw26I	GTCTC	5 cut(s)	87, 1300, 2422, 2789, 3131
AlwI	GGATC	8 cut(s)	1628, 2520, 2533, 2921, 3013, 3027, 3040, 3216
AlwNI	CAGNNNCTG	2 cut(s)	2798, 2836
AoxI	GGCC	5 cut(s)	105, 305, 1274, 1693, 1726
ApaI	GGGCCC	1 cut(s)	1278
ApoI	RAATTY	4 cut(s)	523, 1806, 2399, 3079
AseI	ATTAAT	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	77
Asp700I	GAANNNNTTC	2 cut(s)	2504, 2536
AspLEI	GCGC	1 cut(s)	2568
AspS9I	GGNCC	7 cut(s)	72, 80, 1274, 1275, 1313, 2655, 2990
AsuC2I	CCSGG	3 cut(s)	271, 1345, 3281
AsuHPI	GGTGA	9 cut(s)	563, 839, 1160, 1193, 1211, 1376, 1540, 1598, 2613
AvaII	GGWCC	5 cut(s)	72, 80, 1313, 2655, 2990
AxyI	CCTNAGG	1 cut(s)	835
BaeGI	GKGCMC	2 cut(s)	1233, 1278
BalI	TGGCCA	2 cut(s)	1695, 1728
BamHI	GGATCC	2 cut(s)	2525, 3032
BanI	GGYRCC	3 cut(s)	1817, 2149, 2565
BanII	GRGCYC	3 cut(s)	1278, 2273, 2455
BauI	CACGAG	2 cut(s)	1604, 2316
BbsI	GAAGAC	2 cut(s)	1436, 2229
Bbv12I	GWGCWC	2 cut(s)	2455, 2698
BbvCI	CCTCAGC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	6 cut(s)	1318, 1420, 1552, 2523, 2675, 3195
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	3 cut(s)	2023, 2221, 2959
BcnI	CCSGG	3 cut(s)	271, 1345, 3281
BcoDI	GTCTC	5 cut(s)	87, 1300, 2422, 2789, 3131
BfmI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
BfoI	RGCGCY	1 cut(s)	2569
BfrI	CTTAAG	1 cut(s)	1436
BfuI	GTATCC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	2312
Bme1390I	CCNGG	9 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675, 3195, 3281
Bme18I	GGWCC	5 cut(s)	72, 80, 1313, 2655, 2990
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmgT120I	GGNCC	7 cut(s)	72, 80, 1274, 1275, 1313, 2655, 2990
BmiI	GGNNCC	8 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567, 3034
BmrFI	CCNGG	9 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675, 3195, 3281
BmrI	ACTGGG	3 cut(s)	1261, 1758, 2227
BmsI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
BmuI	ACTGGG	3 cut(s)	1261, 1758, 2227
BpiI	GAAGAC	2 cut(s)	1436, 2229
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	2037
Bpu10I	CCTNAGC	2 cut(s)	387, 2669
BpuEI	CTTGAG	5 cut(s)	125, 1728, 2120, 2257, 3197
BpuMI	CCSGG	3 cut(s)	271, 1345, 3281
BsaHI	GRCGYC	2 cut(s)	972, 2566
BsaJI	CCNNGG	9 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551, 2986
BsaWI	WCCGGW	3 cut(s)	77, 82, 1178
BsaXI	ACNNNNNCTCC	8 cut(s)	15, 45, 308, 338, 861, 891, 2581, 2611
Bse118I	RCCGGY	1 cut(s)	77
Bse21I	CCTNAGG	1 cut(s)	835
Bse3DI	GCAATG	3 cut(s)	756, 762, 981
BseBI	CCWGG	6 cut(s)	1318, 1420, 1552, 2523, 2675, 3195
BseDI	CCNNGG	9 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551, 2986
BseGI	GGATG	8 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549, 3012
BseMI	GCAATG	3 cut(s)	756, 762, 981
BseMII	CTCAG	6 cut(s)	231, 259, 378, 1129, 1842, 2192
BseRI	GAGGAG	2 cut(s)	36, 507
BseSI	GKGCMC	2 cut(s)	1233, 1278
BseYI	CCCAGC	1 cut(s)	2570
BsgI	GTGCAG	2 cut(s)	585, 2826
Bsh1236I	CGCG	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BshNI	GGYRCC	3 cut(s)	1817, 2149, 2565
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	2455, 2698
BsiSI	CCGG	6 cut(s)	78, 83, 270, 1179, 1344, 3280
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	5 cut(s)	87, 1300, 2422, 2789, 3131
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
Bsp120I	GGGCCC	1 cut(s)	1274
Bsp1286I	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
Bsp1407I	TGTACA	2 cut(s)	730, 1188
BspACI	CCGC	6 cut(s)	40, 181, 2047, 2814, 3052, 3164
BspANI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BspCNI	CTCAG	6 cut(s)	230, 258, 379, 1128, 1843, 2193
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	8 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567, 3034
BspMAI	CTGCAG	2 cut(s)	961, 1990
BspPI	GGATC	8 cut(s)	1628, 2520, 2533, 2921, 3013, 3027, 3040, 3216
BspQI	GCTCTTC	1 cut(s)	1790
BspT107I	GGYRCC	3 cut(s)	1817, 2149, 2565
BspTI	CTTAAG	1 cut(s)	1436
BsrDI	GCAATG	3 cut(s)	756, 762, 981
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	2 cut(s)	730, 1188
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	9 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551, 2986
BssNAI	GTATAC	2 cut(s)	1289, 1702
BssNI	GRCGYC	2 cut(s)	972, 2566
BssSI	CACGAG	2 cut(s)	1604, 2316
BssT1I	CCWWGG	4 cut(s)	660, 805, 1278, 2986
Bst1107I	GTATAC	2 cut(s)	1289, 1702
Bst2BI	CACGAG	2 cut(s)	1604, 2316
Bst2UI	CCWGG	6 cut(s)	1318, 1420, 1552, 2523, 2675, 3195
Bst4CI	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
Bst6I	CTCTTC	2 cut(s)	1790, 2245
BstACI	GRCGYC	2 cut(s)	972, 2566
BstAFI	CTTAAG	1 cut(s)	1436
BstAPI	GCANNNNNTGC	2 cut(s)	761, 2798
BstAUI	TGTACA	2 cut(s)	730, 1188
BstC8I	GCNNGC	3 cut(s)	105, 1061, 1458
BstDSI	CCRYGG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	2672
BstF5I	GGATG	8 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549, 3012
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	2569
BstHHI	GCGC	1 cut(s)	2568
BstMAI	GTCTC	5 cut(s)	87, 1300, 2422, 2789, 3131
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
BstNI	CCWGG	6 cut(s)	1318, 1420, 1552, 2523, 2675, 3195
BstNSI	RCATGY	3 cut(s)	1004, 1295, 2985
BstSCI	CCNGG	9 cut(s)	269, 1316, 1343, 1418, 1550, 2521, 2673, 3193, 3279
BstSFI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
BstSLI	GKGCMC	2 cut(s)	1233, 1278
BstUI	CGCG	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	1436, 2229
BstX2I	RGATCY	4 cut(s)	2312, 2525, 3032, 3208
BstXI	CCANNNNNNTGG	2 cut(s)	812, 1426
BstYI	RGATCY	4 cut(s)	2312, 2525, 3032, 3208
BstZ17I	GTATAC	2 cut(s)	1289, 1702
Bsu36I	CCTNAGG	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	8 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549, 3012
BtsI	GCAGTG	2 cut(s)	966, 2450
BtsIMutI	CAGTG	9 cut(s)	353, 406, 790, 966, 1249, 1449, 2450, 2834, 3358
Cac8I	GCNNGC	3 cut(s)	105, 1061, 1458
CaiI	CAGNNNCTG	2 cut(s)	2798, 2836
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	1 cut(s)	2568
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	7 cut(s)	72, 80, 1274, 1275, 1313, 2655, 2990
CpoI	CGGWCCG	1 cut(s)	80
Csp6I	GTAC	7 cut(s)	145, 698, 731, 965, 1153, 1189, 3039
CspAI	ACCGGT	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	1912, 1947
CspI	CGGWCCG	1 cut(s)	80
CviQI	GTAC	7 cut(s)	145, 698, 731, 965, 1153, 1189, 3039
DinI	GGCGCC	1 cut(s)	2567
DraI	TTTAAA	2 cut(s)	120, 2065
DriI	GACNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	1693, 1726
Eam1104I	CTCTTC	2 cut(s)	1790, 2245
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	2 cut(s)	1790, 2245
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	2453
Eco130I	CCWWGG	4 cut(s)	660, 805, 1278, 2986
Eco24I	GRGCYC	3 cut(s)	1278, 2273, 2455
Eco47I	GGWCC	5 cut(s)	72, 80, 1313, 2655, 2990
Eco53kI	GAGCTC	1 cut(s)	2453
Eco57I	CTGAAG	4 cut(s)	498, 660, 2375, 3211
Eco81I	CCTNAGG	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	2453
EcoNI	CCTNNNNNAGG	1 cut(s)	2672
EcoO109I	RGGNCCY	1 cut(s)	1275
EcoRI	GAATTC	3 cut(s)	523, 2399, 3079
EcoRII	CCWGG	6 cut(s)	1316, 1418, 1550, 2521, 2673, 3193
EcoT14I	CCWWGG	4 cut(s)	660, 805, 1278, 2986
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	3 cut(s)	1278, 2273, 2455
EgeI	GGCGCC	1 cut(s)	2567
EheI	GGCGCC	1 cut(s)	2567
ErhI	CCWWGG	4 cut(s)	660, 805, 1278, 2986
FalI	AAGNNNNNCTT	6 cut(s)	1560, 1592, 2489, 2521, 3112, 3144
FaqI	GGGAC	1 cut(s)	638
FauI	CCCGC	1 cut(s)	3157
FbaI	TGATCA	3 cut(s)	2023, 2221, 2959
FblI	GTMKAC	5 cut(s)	1222, 1288, 1701, 3318, 3348
FokI	GGATG	8 cut(s)	64, 572, 773, 1080, 2215, 2479, 2536, 2999
FriOI	GRGCYC	3 cut(s)	1278, 2273, 2455
GlaI	GCGC	1 cut(s)	2567
GsaI	CCCAGC	1 cut(s)	2574
GsuI	CTGGAG	1 cut(s)	2037
HaeII	RGCGCY	1 cut(s)	2569
HaeIII	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
HapII	CCGG	6 cut(s)	78, 83, 270, 1179, 1344, 3280
HhaI	GCGC	1 cut(s)	2568
Hin1I	GRCGYC	2 cut(s)	972, 2566
Hin6I	GCGC	1 cut(s)	2566
HinP1I	GCGC	1 cut(s)	2566
HindIII	AAGCTT	1 cut(s)	1100
HpaII	CCGG	6 cut(s)	78, 83, 270, 1179, 1344, 3280
HphI	GGTGA	9 cut(s)	563, 839, 1160, 1193, 1211, 1376, 1540, 1598, 2613
Hpy99I	CGWCG	1 cut(s)	974
HpyCH4III	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
HpyCH4IV	ACGT	2 cut(s)	972, 2371
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
HpySE526I	ACGT	2 cut(s)	972, 2371
Hsp92I	GRCGYC	2 cut(s)	972, 2566
HspAI	GCGC	1 cut(s)	2566
KasI	GGCGCC	1 cut(s)	2565
Ksp22I	TGATCA	3 cut(s)	2023, 2221, 2959
LguI	GCTCTTC	1 cut(s)	1790
LmnI	GCTCC	7 cut(s)	128, 459, 1764, 1874, 2450, 2740, 2879
LweI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
MaeII	ACGT	2 cut(s)	972, 2371
MfeI	CAATTG	5 cut(s)	1349, 2185, 2781, 2846, 2963
MflI	RGATCY	4 cut(s)	2312, 2525, 3032, 3208
MhlI	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
MlsI	TGGCCA	2 cut(s)	1695, 1728
MluNI	TGGCCA	2 cut(s)	1695, 1728
Mly113I	GGCGCC	1 cut(s)	2566
MlyI	GAGTC	5 cut(s)	206, 461, 1255, 2424, 2990
MmeI	TCCRAC	3 cut(s)	883, 2624, 2857
Mox20I	TGGCCA	2 cut(s)	1695, 1728
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	2 cut(s)	2504, 2536
MscI	TGGCCA	2 cut(s)	1695, 1728
MseI	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
MslI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
Msp20I	TGGCCA	2 cut(s)	1695, 1728
MspA1I	CMGCKG	2 cut(s)	1328, 2764
MspCI	CTTAAG	1 cut(s)	1436
MspI	CCGG	6 cut(s)	78, 83, 270, 1179, 1344, 3280
MspR9I	CCNGG	9 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675, 3195, 3281
MunI	CAATTG	5 cut(s)	1349, 2185, 2781, 2846, 2963
MvaI	CCWGG	6 cut(s)	1318, 1420, 1552, 2523, 2675, 3195
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
NarI	GGCGCC	1 cut(s)	2566
NciI	CCSGG	3 cut(s)	271, 1345, 3281
NlaIV	GGNNCC	8 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567, 3034
NmuCI	GTSAC	7 cut(s)	1247, 1586, 2130, 2180, 2276, 2832, 3062
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	3 cut(s)	1004, 1295, 2985
PagI	TCATGA	1 cut(s)	817
PasI	CCCWGGG	1 cut(s)	1419
PciI	ACATGT	1 cut(s)	1291
PciSI	GCTCTTC	1 cut(s)	1790
PcsI	WCGNNNNNNNCGW	2 cut(s)	3089, 3229
PdmI	GAANNNNTTC	2 cut(s)	2504, 2536
PfeI	GAWTC	8 cut(s)	680, 929, 953, 1049, 1430, 2306, 2348, 3125
PflMI	CCANNNNNTGG	1 cut(s)	2486
PfoI	TCCNGGA	1 cut(s)	2521
PinAI	ACCGGT	1 cut(s)	77
PleI	GAGTC	5 cut(s)	205, 460, 1254, 2423, 2990
PluTI	GGCGCC	1 cut(s)	2569
PpsI	GAGTC	5 cut(s)	205, 460, 1254, 2423, 2990
PscI	ACATGT	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	416
PsiI	TTATAA	2 cut(s)	342, 2088
Psp124BI	GAGCTC	1 cut(s)	2455
Psp6I	CCWGG	6 cut(s)	1316, 1418, 1550, 2521, 2673, 3193
PspFI	CCCAGC	1 cut(s)	2570
PspGI	CCWGG	6 cut(s)	1316, 1418, 1550, 2521, 2673, 3193
PspN4I	GGNNCC	8 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567, 3034
PspOMI	GGGCCC	1 cut(s)	1274
PspPI	GGNCC	7 cut(s)	72, 80, 1274, 1275, 1313, 2655, 2990
PsrI	GAACNNNNNNTAC	2 cut(s)	3040, 3072
PstI	CTGCAG	2 cut(s)	961, 1990
PstNI	CAGNNNCTG	2 cut(s)	2798, 2836
PsuI	RGATCY	4 cut(s)	2312, 2525, 3032, 3208
PvuII	CAGCTG	2 cut(s)	1328, 2764
RsaI	GTAC	7 cut(s)	146, 699, 732, 966, 1154, 1190, 3040
RsaNI	GTAC	7 cut(s)	145, 698, 731, 965, 1153, 1189, 3039
RseI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
Rsr2I	CGGWCCG	1 cut(s)	80
RsrII	CGGWCCG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	2455
SapI	GCTCTTC	1 cut(s)	1790
SaqAI	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
Sau96I	GGNCC	7 cut(s)	72, 80, 1274, 1275, 1313, 2655, 2990
SchI	GAGTC	5 cut(s)	206, 461, 1255, 2424, 2990
ScrFI	CCNGG	9 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675, 3195, 3281
SduI	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
SfaNI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
SfcI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
SfoI	GGCGCC	1 cut(s)	2567
SinI	GGWCC	5 cut(s)	72, 80, 1313, 2655, 2990
SmiMI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
SmlI	CTYRAG	6 cut(s)	140, 1436, 1743, 2135, 2272, 3212
SmoI	CTYRAG	6 cut(s)	140, 1436, 1743, 2135, 2272, 3212
SsiI	CCGC	6 cut(s)	40, 181, 2047, 2814, 3052, 3164
SspDI	GGCGCC	1 cut(s)	2565
SspI	AATATT	1 cut(s)	2461
SstI	GAGCTC	1 cut(s)	2455
StyD4I	CCNGG	9 cut(s)	269, 1316, 1343, 1418, 1550, 2521, 2673, 3193, 3279
StyI	CCWWGG	4 cut(s)	660, 805, 1278, 2986
TaaI	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
TaiI	ACGT	2 cut(s)	975, 2374
TaqI	TCGA	9 cut(s)	87, 99, 436, 969, 1520, 1632, 1773, 2413, 2716
TatI	WGTACW	3 cut(s)	697, 730, 1188
TauI	GCSGC	2 cut(s)	2049, 2816
TfiI	GAWTC	8 cut(s)	680, 929, 953, 1049, 1430, 2306, 2348, 3125
Tru1I	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
Tru9I	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
TscAI	CASTG	8 cut(s)	360, 406, 790, 966, 1256, 1456, 2450, 2841
TseFI	GTSAC	7 cut(s)	1247, 1586, 2130, 2180, 2276, 2832, 3062
Tsp45I	GTSAC	7 cut(s)	1247, 1586, 2130, 2180, 2276, 2832, 3062
TspGWI	ACGGA	6 cut(s)	59, 162, 190, 520, 1248, 2902
TspRI	CASTG	8 cut(s)	360, 406, 790, 966, 1256, 1456, 2450, 2841
Van91I	CCANNNNNTGG	1 cut(s)	2486
Vha464I	CTTAAG	1 cut(s)	1436
VpaK11BI	GGWCC	5 cut(s)	72, 80, 1313, 2655, 2990
VspI	ATTAAT	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	2672
XapI	RAATTY	4 cut(s)	523, 1806, 2399, 3079
XbaI	TCTAGA	2 cut(s)	257, 2540
XceI	RCATGY	3 cut(s)	1004, 1295, 2985
XmiI	GTMKAC	5 cut(s)	1222, 1288, 1701, 3318, 3348
XmnI	GAANNNNTTC	2 cut(s)	2504, 2536
ZraI	GACGTC	1 cut(s)	973
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.