Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

52882677 .. 52890647

Gene Structure 7971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3189 bp

ATGATAGATTCAAGTGTTGGTGGAGATTTGAAGCTGTTCGGTACCGGCGATATGCGGCTGGATTTGGAGACGGAGTTGAGAATCGGCGACTGGCACTGTTTGGCACTGCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATATATAATGATAGATCACTGGATTTGATTTGTAAGGATAAAGATGAAGCTGAGGTATGGTTCAGCGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGAGTTTTTTCCCTTCAGAGTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAAGCAATGGCAGTGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCACTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAATTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTTTGAAGGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCGTTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAGCTGAGAAAAGCTATTGAAACTGATTATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATAAGGGCCCAAGTGACAGCATTGATAAAGATGATAAATTGGATTCCCGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCCGTAGATGATAGTGCTAAAAGGACCAATGAAGGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAACAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTGCTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACAGCCAGTTGCTTTCTAATGGGTCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCAGACTTGGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGACGAGCCTGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTCAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1063

Amino Acids

114.29

Weight (kDa)

8.74

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	223 - 606	5.5e-80	RCC1-like domain
RCC1	PF00415	283 - 332	6.5e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	321 - 346	9.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	335 - 387	5.1e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	374 - 402	7.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	391 - 439	1.2e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	455 - 503	6.7e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	491 - 519	7.2e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	506 - 555	6.2e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	560 - 607	4e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	611 - 677	1.7e-15	FYVE zinc finger
BRX_N	PF13713	874 - 908	1.7e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	914 - 982	7.8e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	988 - 1043	1.4e-29	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1914
AatII	GACGTC	1 cut(s)	801
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	4 cut(s)	41, 1643, 1975, 2391
AccB7I	CCANNNNNTGG	1 cut(s)	2312
AccI	GTMKAC	5 cut(s)	1048, 1114, 1527, 3144, 3174
AciI	CCGC	5 cut(s)	55, 228, 1873, 2640, 2878
AclWI	GGATC	6 cut(s)	1454, 2346, 2359, 2747, 2839, 3042
AcoI	YGGCCR	2 cut(s)	1519, 1552
AcsI	RAATTY	5 cut(s)	294, 349, 1632, 2225, 2905
AcuI	CTGAAG	4 cut(s)	324, 486, 2201, 3037
AcyI	GRCGYC	2 cut(s)	798, 2392
AfaI	GTAC	7 cut(s)	43, 525, 558, 792, 980, 1016, 2866
AflII	CTTAAG	1 cut(s)	1262
AflIII	ACRYGT	2 cut(s)	1117, 2195
AjnI	CCWGG	7 cut(s)	1142, 1244, 1376, 2347, 2499, 2989, 3019
Alw21I	GWGCWC	2 cut(s)	2281, 2524
Alw26I	GTCTC	5 cut(s)	62, 1126, 2248, 2615, 2957
AlwI	GGATC	6 cut(s)	1454, 2346, 2359, 2747, 2839, 3042
AlwNI	CAGNNNCTG	2 cut(s)	2624, 2662
AoxI	GGCC	6 cut(s)	131, 1100, 1519, 1552, 2095, 2491
ApaI	GGGCCC	2 cut(s)	1104, 2099
ApoI	RAATTY	5 cut(s)	294, 349, 1632, 2225, 2905
AseI	ATTAAT	1 cut(s)	242
Asp700I	GAANNNNTTC	3 cut(s)	35, 2330, 2362
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	2394
AspS9I	GGNCC	8 cut(s)	1100, 1101, 1139, 2095, 2096, 2481, 2816, 2859
AsuC2I	CCSGG	2 cut(s)	1171, 3107
AsuHPI	GGTGA	9 cut(s)	389, 665, 986, 1019, 1037, 1202, 1366, 1424, 2439
AvaII	GGWCC	4 cut(s)	1139, 2481, 2816, 2859
AxyI	CCTNAGG	1 cut(s)	661
BaeGI	GKGCMC	3 cut(s)	1059, 1104, 2099
BalI	TGGCCA	2 cut(s)	1521, 1554
BamHI	GGATCC	1 cut(s)	2351
BanI	GGYRCC	4 cut(s)	41, 1643, 1975, 2391
BanII	GRGCYC	3 cut(s)	1104, 2099, 2281
BauI	CACGAG	1 cut(s)	2142
BbsI	GAAGAC	2 cut(s)	1262, 2055
Bbv12I	GWGCWC	2 cut(s)	2281, 2524
BbvCI	CCTCAGC	1 cut(s)	213
BceAI	ACGGC	2 cut(s)	146, 2444
BciT130I	CCWGG	7 cut(s)	1144, 1246, 1378, 2349, 2501, 2991, 3021
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	2 cut(s)	1849, 2785
BcnI	CCSGG	2 cut(s)	1171, 3107
BcoDI	GTCTC	5 cut(s)	62, 1126, 2248, 2615, 2957
BfaI	CTAG	9 cut(s)	513, 836, 2157, 2222, 2367, 2388, 2432, 2922, 3153
BfmI	CTRYAG	3 cut(s)	783, 1812, 2555
BfoI	RGCGCY	1 cut(s)	2395
BfrI	CTTAAG	1 cut(s)	1262
BfuI	GTATCC	1 cut(s)	135
Bme1390I	CCNGG	9 cut(s)	1144, 1171, 1246, 1378, 2349, 2501, 2991, 3021, 3107
Bme18I	GGWCC	4 cut(s)	1139, 2481, 2816, 2859
BmgT120I	GGNCC	8 cut(s)	1100, 1101, 1139, 2095, 2096, 2481, 2816, 2859
BmrFI	CCNGG	9 cut(s)	1144, 1171, 1246, 1378, 2349, 2501, 2991, 3021, 3107
BmrI	ACTGGG	3 cut(s)	1087, 1584, 2053
BmsI	GCATC	6 cut(s)	577, 646, 925, 928, 2587, 2605
BmuI	ACTGGG	3 cut(s)	1087, 1584, 2053
BpiI	GAAGAC	2 cut(s)	1262, 2055
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	1863
Bpu10I	CCTNAGC	2 cut(s)	213, 2495
BpuEI	CTTGAG	3 cut(s)	1554, 1946, 3023
BpuMI	CCSGG	2 cut(s)	1171, 3107
BsaHI	GRCGYC	2 cut(s)	798, 2392
BsaJI	CCNNGG	8 cut(s)	128, 631, 1104, 1142, 1244, 1245, 1377, 2812
BsaWI	WCCGGW	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 134, 164, 687, 717, 2407, 2437
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	661
Bse3DI	GCAATG	2 cut(s)	582, 807
BseBI	CCWGG	7 cut(s)	1144, 1246, 1378, 2349, 2501, 2991, 3021
BseDI	CCNNGG	8 cut(s)	128, 631, 1104, 1142, 1244, 1245, 1377, 2812
BseGI	GGATG	6 cut(s)	391, 592, 919, 2054, 2318, 2375
BseMI	GCAATG	2 cut(s)	582, 807
BseMII	CTCAG	4 cut(s)	204, 955, 1668, 2018
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	3 cut(s)	1059, 1104, 2099
BseYI	CCCAGC	1 cut(s)	2396
BsgI	GTGCAG	2 cut(s)	411, 2652
BshFI	GGCC	6 cut(s)	133, 1102, 1521, 1554, 2097, 2493
BshNI	GGYRCC	4 cut(s)	41, 1643, 1975, 2391
BsiHKAI	GWGCWC	2 cut(s)	2281, 2524
BsiSI	CCGG	4 cut(s)	45, 1005, 1170, 3106
BslFI	GGGAC	2 cut(s)	464, 1227
BsmAI	GTCTC	5 cut(s)	62, 1126, 2248, 2615, 2957
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	464, 1227
BsnI	GGCC	6 cut(s)	133, 1102, 1521, 1554, 2097, 2493
Bsp120I	GGGCCC	2 cut(s)	1100, 2095
Bsp1286I	GDGCHC	5 cut(s)	1059, 1104, 2099, 2281, 2524
Bsp1407I	TGTACA	2 cut(s)	556, 1014
BspACI	CCGC	5 cut(s)	55, 228, 1873, 2640, 2878
BspANI	GGCC	6 cut(s)	133, 1102, 1521, 1554, 2097, 2493
BspCNI	CTCAG	4 cut(s)	205, 954, 1669, 2019
BspHI	TCATGA	1 cut(s)	643
BspMAI	CTGCAG	2 cut(s)	787, 1816
BspPI	GGATC	6 cut(s)	1454, 2346, 2359, 2747, 2839, 3042
BspQI	GCTCTTC	1 cut(s)	1616
BspT107I	GGYRCC	4 cut(s)	41, 1643, 1975, 2391
BspTI	CTTAAG	1 cut(s)	1262
BsrDI	GCAATG	2 cut(s)	582, 807
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	556, 1014
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	8 cut(s)	128, 631, 1104, 1142, 1244, 1245, 1377, 2812
BssNAI	GTATAC	2 cut(s)	1115, 1528
BssNI	GRCGYC	2 cut(s)	798, 2392
BssSI	CACGAG	1 cut(s)	2142
BssT1I	CCWWGG	3 cut(s)	631, 1104, 2812
Bst1107I	GTATAC	2 cut(s)	1115, 1528
Bst2BI	CACGAG	1 cut(s)	2142
Bst2UI	CCWGG	7 cut(s)	1144, 1246, 1378, 2349, 2501, 2991, 3021
Bst4CI	ACNGT	7 cut(s)	98, 563, 1279, 1355, 1501, 1995, 3090
Bst6I	CTCTTC	2 cut(s)	1616, 2071
BstACI	GRCGYC	2 cut(s)	798, 2392
BstAFI	CTTAAG	1 cut(s)	1262
BstAPI	GCANNNNNTGC	2 cut(s)	587, 2624
BstAUI	TGTACA	2 cut(s)	556, 1014
BstC8I	GCNNGC	2 cut(s)	887, 1284
BstDEI	CTNAG	7 cut(s)	213, 661, 941, 1677, 2027, 2495, 2516
BstDSI	CCRYGG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	2498
BstF5I	GGATG	6 cut(s)	391, 592, 919, 2054, 2318, 2375
BstH2I	RGCGCY	1 cut(s)	2395
BstHHI	GCGC	1 cut(s)	2394
BstMAI	GTCTC	5 cut(s)	62, 1126, 2248, 2615, 2957
BstMWI	GCNNNNNNNGC	7 cut(s)	587, 627, 925, 1799, 1973, 2624, 2986
BstNI	CCWGG	7 cut(s)	1144, 1246, 1378, 2349, 2501, 2991, 3021
BstNSI	RCATGY	3 cut(s)	830, 1121, 2811
BstSCI	CCNGG	9 cut(s)	1142, 1169, 1244, 1376, 2347, 2499, 2989, 3019, 3105
BstSFI	CTRYAG	3 cut(s)	783, 1812, 2555
BstSLI	GKGCMC	3 cut(s)	1059, 1104, 2099
BstV2I	GAAGAC	2 cut(s)	1262, 2055
BstX2I	RGATCY	2 cut(s)	2351, 3034
BstXI	CCANNNNNNTGG	2 cut(s)	638, 1252
BstYI	RGATCY	2 cut(s)	2351, 3034
BstZ17I	GTATAC	2 cut(s)	1115, 1528
Bsu36I	CCTNAGG	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	6 cut(s)	133, 1102, 1521, 1554, 2097, 2493
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	391, 592, 919, 2054, 2318, 2375
BtsI	GCAGTG	4 cut(s)	104, 588, 792, 2276
Cac8I	GCNNGC	2 cut(s)	887, 1284
CaiI	CAGNNNCTG	2 cut(s)	2624, 2662
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	2394
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	8 cut(s)	1100, 1101, 1139, 2095, 2096, 2481, 2816, 2859
Csp6I	GTAC	7 cut(s)	42, 524, 557, 791, 979, 1015, 2865
CspCI	CAANNNNNGTGG	4 cut(s)	564, 599, 1738, 1773
CviQI	GTAC	7 cut(s)	42, 524, 557, 791, 979, 1015, 2865
DdeI	CTNAG	7 cut(s)	213, 661, 941, 1677, 2027, 2495, 2516
DinI	GGCGCC	1 cut(s)	2393
DraI	TTTAAA	2 cut(s)	234, 1891
EaeI	YGGCCR	2 cut(s)	1519, 1552
Eam1104I	CTCTTC	2 cut(s)	1616, 2071
EarI	CTCTTC	2 cut(s)	1616, 2071
Ecl136II	GAGCTC	1 cut(s)	2279
Eco130I	CCWWGG	3 cut(s)	631, 1104, 2812
Eco147I	AGGCCT	1 cut(s)	2493
Eco24I	GRGCYC	3 cut(s)	1104, 2099, 2281
Eco47I	GGWCC	4 cut(s)	1139, 2481, 2816, 2859
Eco53kI	GAGCTC	1 cut(s)	2279
Eco57I	CTGAAG	4 cut(s)	324, 486, 2201, 3037
Eco81I	CCTNAGG	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	2279
EcoNI	CCTNNNNNAGG	1 cut(s)	2498
EcoO109I	RGGNCCY	2 cut(s)	1101, 2095
EcoRI	GAATTC	4 cut(s)	294, 349, 2225, 2905
EcoRII	CCWGG	7 cut(s)	1142, 1244, 1376, 2347, 2499, 2989, 3019
EcoT14I	CCWWGG	3 cut(s)	631, 1104, 2812
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	3 cut(s)	1104, 2099, 2281
EgeI	GGCGCC	1 cut(s)	2393
EheI	GGCGCC	1 cut(s)	2393
ErhI	CCWWGG	3 cut(s)	631, 1104, 2812
Esp3I	CGTCTC	1 cut(s)	62
FalI	AAGNNNNNCTT	8 cut(s)	1386, 1418, 1413, 1445, 2315, 2347, 2938, 2970
FaqI	GGGAC	2 cut(s)	464, 1227
FbaI	TGATCA	2 cut(s)	1849, 2785
FblI	GTMKAC	5 cut(s)	1048, 1114, 1527, 3144, 3174
FokI	GGATG	6 cut(s)	398, 599, 906, 2041, 2305, 2362
FriOI	GRGCYC	3 cut(s)	1104, 2099, 2281
FspBI	CTAG	9 cut(s)	513, 836, 2157, 2222, 2367, 2388, 2432, 2922, 3153
GlaI	GCGC	1 cut(s)	2393
GsaI	CCCAGC	1 cut(s)	2400
GsuI	CTGGAG	1 cut(s)	1863
HaeII	RGCGCY	1 cut(s)	2395
HaeIII	GGCC	6 cut(s)	133, 1102, 1521, 1554, 2097, 2493
HapII	CCGG	4 cut(s)	45, 1005, 1170, 3106
HhaI	GCGC	1 cut(s)	2394
Hin1I	GRCGYC	2 cut(s)	798, 2392
Hin6I	GCGC	1 cut(s)	2392
HinP1I	GCGC	1 cut(s)	2392
HindIII	AAGCTT	2 cut(s)	926, 1761
HpaII	CCGG	4 cut(s)	45, 1005, 1170, 3106
HphI	GGTGA	9 cut(s)	389, 665, 986, 1019, 1037, 1202, 1366, 1424, 2439
Hpy99I	CGWCG	1 cut(s)	800
HpyCH4III	ACNGT	7 cut(s)	98, 563, 1279, 1355, 1501, 1995, 3090
HpyCH4IV	ACGT	2 cut(s)	798, 2197
HpyF10VI	GCNNNNNNNGC	7 cut(s)	587, 627, 925, 1799, 1973, 2624, 2986
HpyF3I	CTNAG	7 cut(s)	213, 661, 941, 1677, 2027, 2495, 2516
HpySE526I	ACGT	2 cut(s)	798, 2197
Hsp92I	GRCGYC	2 cut(s)	798, 2392
HspAI	GCGC	1 cut(s)	2392
KasI	GGCGCC	1 cut(s)	2391
KpnI	GGTACC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	1849, 2785
LguI	GCTCTTC	1 cut(s)	1616
LmnI	GCTCC	6 cut(s)	285, 1590, 1700, 2276, 2566, 2705
LweI	GCATC	6 cut(s)	577, 646, 925, 928, 2587, 2605
MaeI	CTAG	9 cut(s)	513, 836, 2157, 2222, 2367, 2388, 2432, 2922, 3153
MaeII	ACGT	2 cut(s)	798, 2197
MboII	GAAGA	9 cut(s)	1262, 1603, 1640, 2055, 2088, 2157, 2193, 2194, 2323
MfeI	CAATTG	5 cut(s)	1175, 2011, 2607, 2672, 2789
MflI	RGATCY	2 cut(s)	2351, 3034
MhlI	GDGCHC	5 cut(s)	1059, 1104, 2099, 2281, 2524
MlsI	TGGCCA	2 cut(s)	1521, 1554
MluNI	TGGCCA	2 cut(s)	1521, 1554
Mly113I	GGCGCC	1 cut(s)	2392
MlyI	GAGTC	5 cut(s)	287, 515, 1081, 2250, 2816
MmeI	TCCRAC	3 cut(s)	709, 2450, 2683
Mox20I	TGGCCA	2 cut(s)	1521, 1554
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	3 cut(s)	35, 2330, 2362
MscI	TGGCCA	2 cut(s)	1521, 1554
MseI	TTAA	7 cut(s)	233, 242, 1263, 1664, 1890, 2283, 2301
MslI	CAYNNNNRTG	3 cut(s)	648, 987, 1062
Msp20I	TGGCCA	2 cut(s)	1521, 1554
MspA1I	CMGCKG	3 cut(s)	228, 1154, 2590
MspCI	CTTAAG	1 cut(s)	1262
MspI	CCGG	4 cut(s)	45, 1005, 1170, 3106
MspR9I	CCNGG	9 cut(s)	1144, 1171, 1246, 1378, 2349, 2501, 2991, 3021, 3107
MunI	CAATTG	5 cut(s)	1175, 2011, 2607, 2672, 2789
MvaI	CCWGG	7 cut(s)	1144, 1246, 1378, 2349, 2501, 2991, 3021
MwoI	GCNNNNNNNGC	7 cut(s)	587, 627, 925, 1799, 1973, 2624, 2986
NarI	GGCGCC	1 cut(s)	2392
NciI	CCSGG	2 cut(s)	1171, 3107
NmuCI	GTSAC	7 cut(s)	1073, 1412, 1956, 2006, 2102, 2658, 2888
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	3 cut(s)	830, 1121, 2811
PagI	TCATGA	1 cut(s)	643
PasI	CCCWGGG	1 cut(s)	1245
PceI	AGGCCT	1 cut(s)	2493
PciI	ACATGT	1 cut(s)	1117
PciSI	GCTCTTC	1 cut(s)	1616
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 3055
PdmI	GAANNNNTTC	3 cut(s)	35, 2330, 2362
PflMI	CCANNNNNTGG	1 cut(s)	2312
PfoI	TCCNGGA	1 cut(s)	2347
PleI	GAGTC	5 cut(s)	286, 514, 1080, 2249, 2816
PluTI	GGCGCC	1 cut(s)	2395
PpsI	GAGTC	5 cut(s)	286, 514, 1080, 2249, 2816
PscI	ACATGT	1 cut(s)	1117
PshBI	ATTAAT	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	1914
Psp124BI	GAGCTC	1 cut(s)	2281
Psp6I	CCWGG	7 cut(s)	1142, 1244, 1376, 2347, 2499, 2989, 3019
PspFI	CCCAGC	1 cut(s)	2396
PspGI	CCWGG	7 cut(s)	1142, 1244, 1376, 2347, 2499, 2989, 3019
PspOMI	GGGCCC	2 cut(s)	1100, 2095
PspPI	GGNCC	8 cut(s)	1100, 1101, 1139, 2095, 2096, 2481, 2816, 2859
PsrI	GAACNNNNNNTAC	2 cut(s)	2866, 2898
PstI	CTGCAG	2 cut(s)	787, 1816
PstNI	CAGNNNCTG	2 cut(s)	2624, 2662
PsuI	RGATCY	2 cut(s)	2351, 3034
PvuII	CAGCTG	2 cut(s)	1154, 2590
RsaI	GTAC	7 cut(s)	43, 525, 558, 792, 980, 1016, 2866
RsaNI	GTAC	7 cut(s)	42, 524, 557, 791, 979, 1015, 2865
RseI	CAYNNNNRTG	3 cut(s)	648, 987, 1062
SacI	GAGCTC	1 cut(s)	2281
SapI	GCTCTTC	1 cut(s)	1616
SaqAI	TTAA	7 cut(s)	233, 242, 1263, 1664, 1890, 2283, 2301
Sau96I	GGNCC	8 cut(s)	1100, 1101, 1139, 2095, 2096, 2481, 2816, 2859
SchI	GAGTC	5 cut(s)	287, 515, 1081, 2250, 2816
ScrFI	CCNGG	9 cut(s)	1144, 1171, 1246, 1378, 2349, 2501, 2991, 3021, 3107
SduI	GDGCHC	5 cut(s)	1059, 1104, 2099, 2281, 2524
SfaNI	GCATC	6 cut(s)	577, 646, 925, 928, 2587, 2605
SfcI	CTRYAG	3 cut(s)	783, 1812, 2555
SfoI	GGCGCC	1 cut(s)	2393
SinI	GGWCC	4 cut(s)	1139, 2481, 2816, 2859
SmiMI	CAYNNNNRTG	3 cut(s)	648, 987, 1062
SmlI	CTYRAG	4 cut(s)	1262, 1569, 1961, 3038
SmoI	CTYRAG	4 cut(s)	1262, 1569, 1961, 3038
SseBI	AGGCCT	1 cut(s)	2493
SsiI	CCGC	5 cut(s)	55, 228, 1873, 2640, 2878
SspDI	GGCGCC	1 cut(s)	2391
SspI	AATATT	1 cut(s)	2287
SspMI	CTAG	9 cut(s)	513, 836, 2157, 2222, 2367, 2388, 2432, 2922, 3153
SstI	GAGCTC	1 cut(s)	2281
StuI	AGGCCT	1 cut(s)	2493
StyD4I	CCNGG	9 cut(s)	1142, 1169, 1244, 1376, 2347, 2499, 2989, 3019, 3105
StyI	CCWWGG	3 cut(s)	631, 1104, 2812
TaaI	ACNGT	7 cut(s)	98, 563, 1279, 1355, 1501, 1995, 3090
TaiI	ACGT	2 cut(s)	801, 2200
TaqI	TCGA	7 cut(s)	262, 795, 1346, 1458, 1599, 2239, 2542
TatI	WGTACW	3 cut(s)	523, 556, 1014
TauI	GCSGC	3 cut(s)	58, 1875, 2642
Tru1I	TTAA	7 cut(s)	233, 242, 1263, 1664, 1890, 2283, 2301
Tru9I	TTAA	7 cut(s)	233, 242, 1263, 1664, 1890, 2283, 2301
TseFI	GTSAC	7 cut(s)	1073, 1412, 1956, 2006, 2102, 2658, 2888
Tsp45I	GTSAC	7 cut(s)	1073, 1412, 1956, 2006, 2102, 2658, 2888
TspGWI	ACGGA	5 cut(s)	86, 346, 1074, 1869, 2728
Van91I	CCANNNNNTGG	1 cut(s)	2312
Vha464I	CTTAAG	1 cut(s)	1262
VpaK11BI	GGWCC	4 cut(s)	1139, 2481, 2816, 2859
VspI	ATTAAT	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	2498
XapI	RAATTY	5 cut(s)	294, 349, 1632, 2225, 2905
XbaI	TCTAGA	1 cut(s)	2366
XceI	RCATGY	3 cut(s)	830, 1121, 2811
XmiI	GTMKAC	5 cut(s)	1048, 1114, 1527, 3144, 3174
XmnI	GAANNNNTTC	3 cut(s)	35, 2330, 2362
XspI	CTAG	9 cut(s)	513, 836, 2157, 2222, 2367, 2388, 2432, 2922, 3153
ZraI	GACGTC	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.