Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

53785277 .. 53794095

Gene Structure 8819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGCACTTAGGGTTTTTGCGAGGAGGAAAAGTAATGTCGCGGACGGATAGGATGGCTTCTGATCTTAGCAGGACCACCGGTCCGGTCGAAAGAGACATCGAGCAGGCCATTACTGCTTTAAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCCGTTCTAATATGGTTCTCAGGGAAGGAGGAAAAACACCTTAAACTCAGCCATGTTTCTAGAATTATATCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATTTATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAGGCAATGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGATGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGCAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCTGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCACGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTAGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTGTAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTCGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTTCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACATGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTCTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCATTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATCATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAGAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAACAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGACTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCATTGACTGCACAAGTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

951

Amino Acids

102.66

Weight (kDa)

9.28

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	34 - 140	1.6e-09	Pleckstrin homology domain
WD40_RLD	PF25390	281 - 664	4.1e-79	RCC1-like domain
RCC1	PF00415	341 - 390	5.7e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	379 - 404	8.5e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	393 - 445	4.5e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	432 - 460	6.7e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	449 - 497	1.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	513 - 561	5.9e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	549 - 577	6.3e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	564 - 613	5.4e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	618 - 665	9.4e-14	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	669 - 735	1.5e-15	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	342, 2088
AccB1I	GGYRCC	3 cut(s)	1817, 2149, 2565
AccB7I	CCANNNNNTGG	1 cut(s)	2486
AccI	GTMKAC	3 cut(s)	1222, 1288, 1701
AccII	CGCG	1 cut(s)	40
AciI	CCGC	4 cut(s)	40, 181, 2047, 2814
AclWI	GGATC	3 cut(s)	1628, 2520, 2533
AcoI	YGGCCR	2 cut(s)	1693, 1726
AcsI	RAATTY	4 cut(s)	468, 523, 1806, 2399
AcuI	CTGAAG	3 cut(s)	498, 660, 2375
AcyI	GRCGYC	1 cut(s)	2566
AfaI	GTAC	6 cut(s)	146, 699, 732, 966, 1154, 1190
AflII	CTTAAG	1 cut(s)	1436
AflIII	ACRYGT	2 cut(s)	1291, 2369
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	9 cut(s)	596, 1413, 1515, 1789, 1845, 1934, 2059, 2379, 2404
AhdI	GACNNNNNGTC	1 cut(s)	78
AjnI	CCWGG	5 cut(s)	1316, 1418, 1550, 2521, 2673
AjuI	GAANNNNNNNTTGG	8 cut(s)	653, 685, 1488, 1520, 2422, 2454, 2489, 2521
Alw21I	GWGCWC	2 cut(s)	2455, 2698
Alw26I	GTCTC	4 cut(s)	87, 1300, 2422, 2789
AlwI	GGATC	3 cut(s)	1628, 2520, 2533
AlwNI	CAGNNNCTG	1 cut(s)	2798
AoxI	GGCC	5 cut(s)	105, 305, 1274, 1693, 1726
ApaI	GGGCCC	1 cut(s)	1278
ApeKI	GCWGC	9 cut(s)	426, 917, 1004, 1460, 1484, 1622, 1988, 2043, 2118
ApoI	RAATTY	4 cut(s)	468, 523, 1806, 2399
AseI	ATTAAT	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	77
Asp700I	GAANNNNTTC	2 cut(s)	2504, 2536
AspLEI	GCGC	1 cut(s)	2568
AspS9I	GGNCC	6 cut(s)	72, 80, 1274, 1275, 1313, 2655
AsuC2I	CCSGG	2 cut(s)	271, 1345
AsuHPI	GGTGA	9 cut(s)	563, 839, 1160, 1193, 1211, 1376, 1540, 1598, 2613
AvaII	GGWCC	4 cut(s)	72, 80, 1313, 2655
AxyI	CCTNAGG	1 cut(s)	835
BaeGI	GKGCMC	2 cut(s)	1233, 1278
BalI	TGGCCA	2 cut(s)	1695, 1728
BamHI	GGATCC	1 cut(s)	2525
BanI	GGYRCC	3 cut(s)	1817, 2149, 2565
BanII	GRGCYC	3 cut(s)	1278, 2273, 2455
BauI	CACGAG	2 cut(s)	1604, 2316
BbsI	GAAGAC	2 cut(s)	1436, 2229
Bbv12I	GWGCWC	2 cut(s)	2455, 2698
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	9 cut(s)	438, 904, 1016, 1471, 1472, 1634, 2000, 2030, 2130
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	5 cut(s)	1318, 1420, 1552, 2523, 2675
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	2 cut(s)	2023, 2221
BcnI	CCSGG	2 cut(s)	271, 1345
BcoDI	GTCTC	4 cut(s)	87, 1300, 2422, 2789
BfaI	CTAG	9 cut(s)	258, 687, 1010, 1385, 2331, 2396, 2541, 2562, 2606
BfmI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
BfoI	RGCGCY	1 cut(s)	2569
BfrI	CTTAAG	1 cut(s)	1436
BfuI	GTATCC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	2312
Bme1390I	CCNGG	7 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675
Bme18I	GGWCC	4 cut(s)	72, 80, 1313, 2655
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmgT120I	GGNCC	6 cut(s)	72, 80, 1274, 1275, 1313, 2655
BmiI	GGNNCC	7 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567
BmrFI	CCNGG	7 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675
BmrI	ACTGGG	3 cut(s)	1261, 1758, 2227
BmsI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
BmuI	ACTGGG	3 cut(s)	1261, 1758, 2227
BpiI	GAAGAC	2 cut(s)	1436, 2229
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 2698, 2730
BpmI	CTGGAG	1 cut(s)	2037
Bpu10I	CCTNAGC	2 cut(s)	387, 2669
BpuEI	CTTGAG	4 cut(s)	125, 1728, 2120, 2257
BpuMI	CCSGG	2 cut(s)	271, 1345
BsaHI	GRCGYC	1 cut(s)	2566
BsaJI	CCNNGG	8 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551
BsaWI	WCCGGW	2 cut(s)	77, 82
BsaXI	ACNNNNNCTCC	8 cut(s)	15, 45, 308, 338, 861, 891, 2581, 2611
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	8 cut(s)	360, 783, 1256, 1729, 1764, 2233, 2480, 2830
Bse21I	CCTNAGG	1 cut(s)	835
Bse3DI	GCAATG	3 cut(s)	756, 762, 981
BseBI	CCWGG	5 cut(s)	1318, 1420, 1552, 2523, 2675
BseDI	CCNNGG	8 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551
BseGI	GGATG	7 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549
BseMI	GCAATG	3 cut(s)	756, 762, 981
BseMII	CTCAG	6 cut(s)	231, 259, 378, 1129, 1842, 2192
BseNI	ACTGG	8 cut(s)	360, 783, 1256, 1729, 1764, 2233, 2480, 2830
BseRI	GAGGAG	2 cut(s)	36, 507
BseSI	GKGCMC	2 cut(s)	1233, 1278
BseXI	GCAGC	9 cut(s)	438, 904, 1016, 1471, 1472, 1634, 2000, 2030, 2130
BseYI	CCCAGC	1 cut(s)	2570
BsgI	GTGCAG	2 cut(s)	585, 2826
Bsh1236I	CGCG	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BshNI	GGYRCC	3 cut(s)	1817, 2149, 2565
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	2455, 2698
BsiSI	CCGG	4 cut(s)	78, 83, 270, 1344
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	4 cut(s)	87, 1300, 2422, 2789
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
Bsp120I	GGGCCC	1 cut(s)	1274
Bsp1286I	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
Bsp1407I	TGTACA	2 cut(s)	730, 1188
BspACI	CCGC	4 cut(s)	40, 181, 2047, 2814
BspANI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BspCNI	CTCAG	6 cut(s)	230, 258, 379, 1128, 1843, 2193
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	7 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567
BspMAI	CTGCAG	2 cut(s)	961, 1990
BspPI	GGATC	3 cut(s)	1628, 2520, 2533
BspQI	GCTCTTC	1 cut(s)	1790
BspT107I	GGYRCC	3 cut(s)	1817, 2149, 2565
BspTI	CTTAAG	1 cut(s)	1436
BsrDI	GCAATG	3 cut(s)	756, 762, 981
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	2 cut(s)	730, 1188
BsrI	ACTGG	8 cut(s)	360, 783, 1256, 1729, 1764, 2233, 2480, 2830
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	8 cut(s)	302, 660, 805, 1278, 1316, 1418, 1419, 1551
BssNAI	GTATAC	2 cut(s)	1289, 1702
BssNI	GRCGYC	1 cut(s)	2566
BssSI	CACGAG	2 cut(s)	1604, 2316
BssT1I	CCWWGG	3 cut(s)	660, 805, 1278
Bst1107I	GTATAC	2 cut(s)	1289, 1702
Bst2BI	CACGAG	2 cut(s)	1604, 2316
Bst2UI	CCWGG	5 cut(s)	1318, 1420, 1552, 2523, 2675
Bst4CI	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
Bst6I	CTCTTC	2 cut(s)	1790, 2245
BstACI	GRCGYC	1 cut(s)	2566
BstAFI	CTTAAG	1 cut(s)	1436
BstAPI	GCANNNNNTGC	2 cut(s)	761, 2798
BstAUI	TGTACA	2 cut(s)	730, 1188
BstC8I	GCNNGC	3 cut(s)	105, 1061, 1458
BstDSI	CCRYGG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	2672
BstF5I	GGATG	7 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	2569
BstHHI	GCGC	1 cut(s)	2568
BstMAI	GTCTC	4 cut(s)	87, 1300, 2422, 2789
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
BstNI	CCWGG	5 cut(s)	1318, 1420, 1552, 2523, 2675
BstNSI	RCATGY	2 cut(s)	1004, 1295
BstSCI	CCNGG	7 cut(s)	269, 1316, 1343, 1418, 1550, 2521, 2673
BstSFI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
BstSLI	GKGCMC	2 cut(s)	1233, 1278
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	9 cut(s)	438, 904, 1016, 1471, 1472, 1634, 2000, 2030, 2130
BstV2I	GAAGAC	2 cut(s)	1436, 2229
BstX2I	RGATCY	2 cut(s)	2312, 2525
BstXI	CCANNNNNNTGG	2 cut(s)	812, 1426
BstYI	RGATCY	2 cut(s)	2312, 2525
BstZ17I	GTATAC	2 cut(s)	1289, 1702
Bsu36I	CCTNAGG	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	7 cut(s)	57, 565, 766, 1093, 2228, 2492, 2549
BtsI	GCAGTG	2 cut(s)	966, 2450
BtsIMutI	CAGTG	7 cut(s)	353, 406, 790, 966, 1249, 1449, 2450
Cac8I	GCNNGC	3 cut(s)	105, 1061, 1458
CaiI	CAGNNNCTG	1 cut(s)	2798
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	1 cut(s)	2568
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	6 cut(s)	72, 80, 1274, 1275, 1313, 2655
CpoI	CGGWCCG	1 cut(s)	80
Csp6I	GTAC	6 cut(s)	145, 698, 731, 965, 1153, 1189
CspAI	ACCGGT	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	1912, 1947
CspI	CGGWCCG	1 cut(s)	80
CviQI	GTAC	6 cut(s)	145, 698, 731, 965, 1153, 1189
DinI	GGCGCC	1 cut(s)	2567
DraI	TTTAAA	3 cut(s)	120, 408, 2065
DriI	GACNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	1693, 1726
Eam1104I	CTCTTC	2 cut(s)	1790, 2245
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	2 cut(s)	1790, 2245
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	2453
Eco130I	CCWWGG	3 cut(s)	660, 805, 1278
Eco24I	GRGCYC	3 cut(s)	1278, 2273, 2455
Eco47I	GGWCC	4 cut(s)	72, 80, 1313, 2655
Eco53kI	GAGCTC	1 cut(s)	2453
Eco57I	CTGAAG	3 cut(s)	498, 660, 2375
Eco81I	CCTNAGG	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	2453
EcoNI	CCTNNNNNAGG	1 cut(s)	2672
EcoO109I	RGGNCCY	1 cut(s)	1275
EcoRI	GAATTC	3 cut(s)	468, 523, 2399
EcoRII	CCWGG	5 cut(s)	1316, 1418, 1550, 2521, 2673
EcoT14I	CCWWGG	3 cut(s)	660, 805, 1278
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	3 cut(s)	1278, 2273, 2455
EgeI	GGCGCC	1 cut(s)	2567
EheI	GGCGCC	1 cut(s)	2567
ErhI	CCWWGG	3 cut(s)	660, 805, 1278
FalI	AAGNNNNNCTT	4 cut(s)	1560, 1592, 2489, 2521
FaqI	GGGAC	1 cut(s)	638
FbaI	TGATCA	2 cut(s)	2023, 2221
FblI	GTMKAC	3 cut(s)	1222, 1288, 1701
FokI	GGATG	7 cut(s)	64, 572, 773, 1080, 2215, 2479, 2536
FriOI	GRGCYC	3 cut(s)	1278, 2273, 2455
FspBI	CTAG	9 cut(s)	258, 687, 1010, 1385, 2331, 2396, 2541, 2562, 2606
GlaI	GCGC	1 cut(s)	2567
GsaI	CCCAGC	1 cut(s)	2574
GsuI	CTGGAG	1 cut(s)	2037
HaeII	RGCGCY	1 cut(s)	2569
HaeIII	GGCC	5 cut(s)	107, 307, 1276, 1695, 1728
HapII	CCGG	4 cut(s)	78, 83, 270, 1344
HhaI	GCGC	1 cut(s)	2568
Hin1I	GRCGYC	1 cut(s)	2566
Hin6I	GCGC	1 cut(s)	2566
HinP1I	GCGC	1 cut(s)	2566
HindIII	AAGCTT	2 cut(s)	1100, 1757
HpaII	CCGG	4 cut(s)	78, 83, 270, 1344
HphI	GGTGA	9 cut(s)	563, 839, 1160, 1193, 1211, 1376, 1540, 1598, 2613
HpyCH4III	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
HpyCH4IV	ACGT	1 cut(s)	2371
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
HpySE526I	ACGT	1 cut(s)	2371
Hsp92I	GRCGYC	1 cut(s)	2566
HspAI	GCGC	1 cut(s)	2566
KasI	GGCGCC	1 cut(s)	2565
Ksp22I	TGATCA	2 cut(s)	2023, 2221
LguI	GCTCTTC	1 cut(s)	1790
LmnI	GCTCC	5 cut(s)	128, 459, 1874, 2450, 2740
Lsp1109I	GCAGC	9 cut(s)	438, 904, 1016, 1471, 1472, 1634, 2000, 2030, 2130
LweI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
MaeI	CTAG	9 cut(s)	258, 687, 1010, 1385, 2331, 2396, 2541, 2562, 2606
MaeII	ACGT	1 cut(s)	2371
MaeIII	GTNAC	8 cut(s)	1012, 1168, 1247, 1333, 1586, 2130, 2180, 2276
MfeI	CAATTG	3 cut(s)	1349, 2185, 2781
MflI	RGATCY	2 cut(s)	2312, 2525
MhlI	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
MlsI	TGGCCA	2 cut(s)	1695, 1728
MluNI	TGGCCA	2 cut(s)	1695, 1728
Mly113I	GGCGCC	1 cut(s)	2566
MlyI	GAGTC	5 cut(s)	206, 461, 1255, 2424, 2716
MmeI	TCCRAC	2 cut(s)	883, 2624
Mox20I	TGGCCA	2 cut(s)	1695, 1728
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	2 cut(s)	2504, 2536
MscI	TGGCCA	2 cut(s)	1695, 1728
MseI	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
MslI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
Msp20I	TGGCCA	2 cut(s)	1695, 1728
MspA1I	CMGCKG	2 cut(s)	1328, 2764
MspCI	CTTAAG	1 cut(s)	1436
MspI	CCGG	4 cut(s)	78, 83, 270, 1344
MspR9I	CCNGG	7 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675
MunI	CAATTG	3 cut(s)	1349, 2185, 2781
MvaI	CCWGG	5 cut(s)	1318, 1420, 1552, 2523, 2675
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	8 cut(s)	113, 180, 761, 801, 1099, 1973, 2147, 2798
NarI	GGCGCC	1 cut(s)	2566
NciI	CCSGG	2 cut(s)	271, 1345
NlaIV	GGNNCC	7 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567
NmuCI	GTSAC	5 cut(s)	1247, 1586, 2130, 2180, 2276
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	1004, 1295
PagI	TCATGA	1 cut(s)	817
PasI	CCCWGGG	1 cut(s)	1419
PciI	ACATGT	1 cut(s)	1291
PciSI	GCTCTTC	1 cut(s)	1790
PdmI	GAANNNNTTC	2 cut(s)	2504, 2536
PfeI	GAWTC	7 cut(s)	680, 929, 953, 1049, 1430, 2306, 2348
PflMI	CCANNNNNTGG	1 cut(s)	2486
PfoI	TCCNGGA	1 cut(s)	2521
PinAI	ACCGGT	1 cut(s)	77
PleI	GAGTC	5 cut(s)	205, 460, 1254, 2423, 2715
PluTI	GGCGCC	1 cut(s)	2569
PpsI	GAGTC	5 cut(s)	205, 460, 1254, 2423, 2715
PscI	ACATGT	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	416
PsiI	TTATAA	2 cut(s)	342, 2088
Psp124BI	GAGCTC	1 cut(s)	2455
Psp6I	CCWGG	5 cut(s)	1316, 1418, 1550, 2521, 2673
PspFI	CCCAGC	1 cut(s)	2570
PspGI	CCWGG	5 cut(s)	1316, 1418, 1550, 2521, 2673
PspN4I	GGNNCC	7 cut(s)	1257, 1276, 1315, 1819, 2151, 2527, 2567
PspOMI	GGGCCC	1 cut(s)	1274
PspPI	GGNCC	6 cut(s)	72, 80, 1274, 1275, 1313, 2655
PstI	CTGCAG	2 cut(s)	961, 1990
PstNI	CAGNNNCTG	1 cut(s)	2798
PsuI	RGATCY	2 cut(s)	2312, 2525
PvuII	CAGCTG	2 cut(s)	1328, 2764
RsaI	GTAC	6 cut(s)	146, 699, 732, 966, 1154, 1190
RsaNI	GTAC	6 cut(s)	145, 698, 731, 965, 1153, 1189
RseI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
Rsr2I	CGGWCCG	1 cut(s)	80
RsrII	CGGWCCG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	2455
SapI	GCTCTTC	1 cut(s)	1790
SaqAI	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
Sau96I	GGNCC	6 cut(s)	72, 80, 1274, 1275, 1313, 2655
SchI	GAGTC	5 cut(s)	206, 461, 1255, 2424, 2716
ScrFI	CCNGG	7 cut(s)	271, 1318, 1345, 1420, 1552, 2523, 2675
SduI	GDGCHC	5 cut(s)	1233, 1278, 2273, 2455, 2698
SfaNI	GCATC	6 cut(s)	751, 820, 1099, 1102, 2761, 2779
SfcI	CTRYAG	5 cut(s)	957, 1986, 2211, 2634, 2729
SfoI	GGCGCC	1 cut(s)	2567
SinI	GGWCC	4 cut(s)	72, 80, 1313, 2655
SmiMI	CAYNNNNRTG	3 cut(s)	822, 1161, 1236
SmlI	CTYRAG	5 cut(s)	140, 1436, 1743, 2135, 2272
SmoI	CTYRAG	5 cut(s)	140, 1436, 1743, 2135, 2272
SsiI	CCGC	4 cut(s)	40, 181, 2047, 2814
SspDI	GGCGCC	1 cut(s)	2565
SspI	AATATT	1 cut(s)	2461
SspMI	CTAG	9 cut(s)	258, 687, 1010, 1385, 2331, 2396, 2541, 2562, 2606
SstI	GAGCTC	1 cut(s)	2455
StyD4I	CCNGG	7 cut(s)	269, 1316, 1343, 1418, 1550, 2521, 2673
StyI	CCWWGG	3 cut(s)	660, 805, 1278
TaaI	ACNGT	5 cut(s)	737, 1453, 1529, 1675, 2169
TaiI	ACGT	1 cut(s)	2374
TaqI	TCGA	9 cut(s)	87, 99, 436, 969, 1520, 1632, 1773, 2413, 2716
TatI	WGTACW	3 cut(s)	697, 730, 1188
TauI	GCSGC	2 cut(s)	2049, 2816
TfiI	GAWTC	7 cut(s)	680, 929, 953, 1049, 1430, 2306, 2348
Tru1I	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
Tru9I	TTAA	9 cut(s)	119, 240, 407, 416, 1437, 1838, 2064, 2457, 2475
TscAI	CASTG	7 cut(s)	360, 406, 790, 966, 1256, 1456, 2450
TseFI	GTSAC	5 cut(s)	1247, 1586, 2130, 2180, 2276
TseI	GCWGC	9 cut(s)	426, 917, 1004, 1460, 1484, 1622, 1988, 2043, 2118
Tsp45I	GTSAC	5 cut(s)	1247, 1586, 2130, 2180, 2276
TspDTI	ATGAA	8 cut(s)	396, 572, 758, 838, 1254, 1991, 2217, 2676
TspGWI	ACGGA	5 cut(s)	59, 162, 190, 520, 1248
TspRI	CASTG	7 cut(s)	360, 406, 790, 966, 1256, 1456, 2450
Van91I	CCANNNNNTGG	1 cut(s)	2486
Vha464I	CTTAAG	1 cut(s)	1436
VpaK11BI	GGWCC	4 cut(s)	72, 80, 1313, 2655
VspI	ATTAAT	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	2672
XapI	RAATTY	4 cut(s)	468, 523, 1806, 2399
XbaI	TCTAGA	2 cut(s)	257, 2540
XceI	RCATGY	2 cut(s)	1004, 1295
XmiI	GTMKAC	3 cut(s)	1222, 1288, 1701
XmnI	GAANNNNTTC	2 cut(s)	2504, 2536
XspI	CTAG	9 cut(s)	258, 687, 1010, 1385, 2331, 2396, 2541, 2562, 2606
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.