Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Reverse (-)

16135723 .. 16137463

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G42990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGAGGAATTTGGAAGCATAGATTTACTCGGAGATGAAGATTTCTTCTTCGATTTCGATCCTTCAATCGTAATTGATTCTCTTCCGGCGGAGGATTTTCTTCAGTCTTCACCGGATTCATGGATCGGAGAAATCGAGAATCAATTGATGAACGATGAGAATCATCAAGAGGAGAGTTTTGTGGAATTGGATCAGCAATCGGTTTCAGATTTCATAGCGGATCTACTCGTTGATTATCCAACTAGCGATTCTGGCTCCGTTGATTTGGCGGCTGATAAAGTTCTAACCGTCGATTCTCCCGCCGCCGCTGATGATTCCGGGAAGGAGAATTCGGATTTGGTTGTTGAGAAGAAGTCTAATGATTCTGGTAGCGAGATTCATGATGATGATGACGAAGAAGGAGACGATGATGCTGTGGCTAAAAAACGAAGAAGGAGAGTAAGAAATAGAGATGCGGCGGTTAGATCGAGAGAGAGGAAGAAGGAATATGTACAAGATTTAGAGAAGAAGAGTAAGTATCTCGAAAGAGAATGCTTGAGACTAGGACGTATGCTTGAGTGCTTCGTTGCTGAAAACCAGTCTCTACGTTACTGTTTGCAAAAGGGTAATGGCAATAATACTACCATGATGTCGAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTTCTGGGAGTAAACTTCATTTGCCTATTCCCTTATATGTCCCACACAAAGTGTTGCCTCCTACGTCCAGAACCAGAAAAGCTGGTTCTAAACGGGCTCGGGAGTAGTAGCAAACCGTCTTATACCGGCGTTAGTCGGAGATGTAAGGGTTCGAGGCCTAGGATGAAATACCAAATCTTAACCCTTGCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

295

Amino Acids

33.17

Weight (kDa)

4.61

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	141 - 185	2.9e-09	Basic region leucine zipper
bZIP_1	PF00170	141 - 196	8.6e-08	bZIP transcription factor
bZIP_Maf	PF03131	142 - 197	8.8e-06	bZIP Maf transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	56, 134, 201, 231
AcsI	RAATTY	2 cut(s)	11, 331
AcuI	CTGAAG	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	2 cut(s)	676, 690
AgsI	TTSAA	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	4 cut(s)	235, 267, 323, 355
AluBI	AGCT	1 cut(s)	775
AluI	AGCT	1 cut(s)	775
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	3 cut(s)	399, 535, 588
AlwI	GGATC	4 cut(s)	56, 134, 201, 231
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	1 cut(s)	848
ApoI	RAATTY	2 cut(s)	11, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspA2I	CCTAGG	1 cut(s)	851
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	791
AvrII	CCTAGG	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	399, 535, 588
BfaI	CTAG	3 cut(s)	246, 545, 852
BisI	GCNGC	5 cut(s)	273, 306, 309, 459, 882
BlnI	CCTAGG	1 cut(s)	851
BlsI	GCNGC	5 cut(s)	274, 307, 310, 460, 883
Bme1390I	CCNGG	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	259, 682
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	403, 445
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	559, 578
BpuMI	CCSGG	1 cut(s)	322
BsaBI	GATNNNNATC	2 cut(s)	60, 162
BsaJI	CCNNGG	1 cut(s)	851
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 690
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	1 cut(s)	580
Bse8I	GATNNNNATC	2 cut(s)	60, 162
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	1 cut(s)	861
BseJI	GATNNNNATC	2 cut(s)	60, 162
BseLI	CCNNNNNNNGG	2 cut(s)	676, 690
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	4 cut(s)	89, 116, 321, 819
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	2 cut(s)	676, 690
BsmAI	GTCTC	3 cut(s)	399, 535, 588
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	718
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	850
BsoBI	CYCGRG	1 cut(s)	791
Bsp1286I	GDGCHC	2 cut(s)	657, 792
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	61, 126, 193, 223, 467
BspANI	GGCC	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	259, 682
BspPI	GGATC	4 cut(s)	56, 134, 201, 231
BsrFI	RCCGGY	1 cut(s)	818
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	5 cut(s)	61, 126, 193, 223, 467
BssT1I	CCWWGG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	292, 596, 810
Bst6I	CTCTTC	2 cut(s)	90, 506
BstAUI	TGTACA	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	861
BstKTI	GATC	5 cut(s)	64, 129, 196, 226, 470
BstMAI	GTCTC	3 cut(s)	399, 535, 588
BstMBI	GATC	5 cut(s)	61, 126, 193, 223, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	861
CciI	TCATGA	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	818
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	3 cut(s)	123, 383, 628
CviJI	RGCY	7 cut(s)	258, 275, 422, 694, 775, 790, 850
CviKI_1	RGCY	7 cut(s)	258, 275, 422, 694, 775, 790, 850
CviQI	GTAC	1 cut(s)	494
DpnI	GATC	5 cut(s)	63, 128, 195, 225, 469
DpnII	GATC	5 cut(s)	61, 126, 193, 223, 467
DraIII	CACNNNGTG	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	90, 506
EarI	CTCTTC	2 cut(s)	90, 506
EciI	GGCGGA	2 cut(s)	20, 107
Eco130I	CCWWGG	1 cut(s)	851
Eco147I	AGGCCT	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	791
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	851
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	3 cut(s)	126, 386, 631
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	3 cut(s)	122, 382, 627
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	273, 306, 309, 459, 882
FokI	GGATG	1 cut(s)	868
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	5 cut(s)	273, 306, 309, 459, 882
FspBI	CTAG	3 cut(s)	246, 545, 852
GluI	GCNGC	5 cut(s)	273, 306, 309, 459, 882
HaeIII	GGCC	1 cut(s)	850
HapII	CCGG	4 cut(s)	89, 116, 321, 819
Hin1II	CATG	3 cut(s)	126, 386, 631
HpaII	CCGG	4 cut(s)	89, 116, 321, 819
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	5 cut(s)	35, 131, 211, 337, 831
Hpy188III	TCNNGA	7 cut(s)	139, 170, 383, 471, 524, 761, 793
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	5 cut(s)	75, 319, 395, 429, 478
HpyCH4III	ACNGT	3 cut(s)	292, 596, 810
HpyCH4IV	ACGT	3 cut(s)	550, 589, 757
HpyCH4V	TGCA	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpySE526I	ACGT	3 cut(s)	550, 589, 757
Hsp92II	CATG	3 cut(s)	126, 386, 631
Kzo9I	GATC	5 cut(s)	61, 126, 193, 223, 467
LmnI	GCTCC	1 cut(s)	263
LweI	GCATC	2 cut(s)	403, 445
MaeI	CTAG	3 cut(s)	246, 545, 852
MaeII	ACGT	3 cut(s)	550, 589, 757
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	5 cut(s)	63, 128, 195, 225, 469
MboI	GATC	5 cut(s)	61, 126, 193, 223, 467
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	657, 792
MluCI	AATT	5 cut(s)	11, 75, 146, 188, 331
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	3 cut(s)	266, 642, 809
MnlI	CCTC	5 cut(s)	88, 166, 471, 761, 840
MseI	TTAA	1 cut(s)	872
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	4 cut(s)	89, 116, 321, 819
MspR9I	CCNGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	5 cut(s)	61, 126, 193, 223, 467
NlaIII	CATG	3 cut(s)	126, 386, 631
NlaIV	GGNNCC	2 cut(s)	259, 682
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	5 cut(s)	274, 307, 310, 460, 883
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	259, 682
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	872
SatI	GCNGC	5 cut(s)	273, 306, 309, 459, 882
Sau3AI	GATC	5 cut(s)	61, 126, 193, 223, 467
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	2 cut(s)	657, 792
SetI	ASST	4 cut(s)	553, 592, 760, 777
SfaNI	GCATC	2 cut(s)	403, 445
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	538, 557
SmoI	CTYRAG	2 cut(s)	538, 557
Sse9I	AATT	5 cut(s)	11, 75, 146, 188, 331
SseBI	AGGCCT	1 cut(s)	850
SspMI	CTAG	3 cut(s)	246, 545, 852
StuI	AGGCCT	1 cut(s)	850
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	3 cut(s)	292, 596, 810
TaiI	ACGT	3 cut(s)	553, 592, 760
TaqI	TCGA	8 cut(s)	54, 60, 138, 294, 470, 525, 635, 845
TasI	AATT	5 cut(s)	11, 75, 146, 188, 331
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	5 cut(s)	275, 308, 311, 461, 884
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TspDTI	ATGAA	7 cut(s)	54, 111, 167, 205, 371, 700, 872
TspGWI	ACGGA	1 cut(s)	250
XapI	RAATTY	2 cut(s)	11, 331
XmaJI	CCTAGG	1 cut(s)	851
XspI	CTAG	3 cut(s)	246, 545, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.