Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8478867.1

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 964

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8478867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

gtctccctccctccctctcctcgatcacagatcttcaggtcttggtcttcgcctccaattctggcgaccactagcctcgctgctgtctctcagaccagccttcaccaacccgaactctgacaaagatttgatctctctatctctcaacagcgttgacgtgatcggagagatcgattgggatttcgtattcgactatgcgaatgggttagaattattgcaagagttggagaatccggccgtcacggcggcaactagggcttcgccttcttcattgtcgtcatcaacggtggaggatgctctggccaacccggagacgggatcgattgacacgtggatcggcgaggttgaggggatgctgatgaaagacgatgacagaagcaaggtggcttcggaggagccacctaaggagtactatgagaaattttttggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

143

Amino Acids

15.72

Weight (kDa)

4.26

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	2 cut(s)	326, 342
AcoI	YGGCCR	2 cut(s)	235, 301
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	19
AcvI	CACGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	314, 315
AflIII	ACRYGT	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	158
Alw26I	GTCTC	3 cut(s)	7, 91, 306
AlwI	GGATC	2 cut(s)	326, 342
AoxI	GGCC	2 cut(s)	235, 301
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	222, 259
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	3 cut(s)	7, 91, 306
BfaI	CTAG	2 cut(s)	72, 253
BglI	GCCNNNNNGGC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	81, 247
BlsI	GCNGC	2 cut(s)	82, 248
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	284, 343
BpiI	GAAGAC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	309
Bsa29I	ATCGAT	2 cut(s)	172, 321
BsaAI	YACGTR	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 315
Bse21I	CCTNAGG	1 cut(s)	403
BseCI	ATCGAT	2 cut(s)	172, 321
BseGI	GGATG	2 cut(s)	299, 358
BseLI	CCNNNNNNNGG	2 cut(s)	314, 315
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	2 cut(s)	9, 408
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	237, 303
BshVI	ATCGAT	2 cut(s)	172, 321
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	234, 309
BslI	CCNNNNNNNGG	2 cut(s)	314, 315
BsmAI	GTCTC	3 cut(s)	7, 91, 306
BsmBI	CGTCTC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	237, 303
Bsp143I	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	2 cut(s)	237, 303
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	2 cut(s)	172, 321
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	326, 342
BssMI	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
Bst4CI	ACNGT	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	90, 403
BstF5I	GGATG	2 cut(s)	299, 358
BstKTI	GATC	7 cut(s)	26, 33, 133, 163, 172, 321, 337
BstMAI	GTCTC	3 cut(s)	7, 91, 306
BstMBI	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 255
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BstZI	CGGCCG	1 cut(s)	235
Bsu15I	ATCGAT	2 cut(s)	172, 321
Bsu36I	CCTNAGG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	237, 303
BsuTUI	ATCGAT	2 cut(s)	172, 321
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	299, 358
ClaI	ATCGAT	2 cut(s)	172, 321
Csp6I	GTAC	1 cut(s)	410
CviJI	RGCY	8 cut(s)	75, 99, 237, 258, 303, 387, 398, 430
CviKI_1	RGCY	8 cut(s)	75, 99, 237, 258, 303, 387, 398, 430
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	90, 403
DpnI	GATC	7 cut(s)	25, 32, 132, 162, 171, 320, 336
DpnII	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
EaeI	YGGCCR	2 cut(s)	235, 301
EagI	CGGCCG	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	331
Eco81I	CCTNAGG	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	306
FaiI	YATR	2 cut(s)	196, 415
Fnu4HI	GCNGC	2 cut(s)	81, 247
FokI	GGATG	2 cut(s)	306, 365
Fsp4HI	GCNGC	2 cut(s)	81, 247
FspBI	CTAG	2 cut(s)	72, 253
GluI	GCNGC	2 cut(s)	81, 247
HaeIII	GGCC	2 cut(s)	237, 303
HapII	CCGG	2 cut(s)	234, 309
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	2 cut(s)	234, 309
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	4 cut(s)	93, 119, 165, 392
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	110, 274
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	157, 330
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 255
HpyF3I	CTNAG	2 cut(s)	90, 403
HpySE526I	ACGT	2 cut(s)	157, 330
Kzo9I	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	6 cut(s)	22, 47, 109, 247, 285, 322
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	284, 343
MaeI	CTAG	2 cut(s)	72, 253
MaeII	ACGT	2 cut(s)	157, 330
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	7 cut(s)	25, 32, 132, 162, 171, 320, 336
MboI	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
MboII	GAAGA	3 cut(s)	25, 39, 259
MflI	RGATCY	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	57, 210, 420
MluNI	TGGCCA	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	205
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	2 cut(s)	234, 309
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	243, 255
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	169, 327
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	82, 248
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	331
PspCI	CACGTG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SatI	GCNGC	2 cut(s)	81, 247
Sau3AI	GATC	7 cut(s)	23, 30, 130, 160, 169, 318, 334
ScaI	AGTACT	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	6 cut(s)	41, 160, 333, 346, 385, 404
SfaNI	GCATC	2 cut(s)	284, 343
Sse9I	AATT	3 cut(s)	57, 210, 420
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	72, 253
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	160, 333
TaqI	TCGA	4 cut(s)	22, 172, 190, 321
TasI	AATT	3 cut(s)	57, 210, 420
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	259, 375
XapI	RAATTY	1 cut(s)	420
XspI	CTAG	2 cut(s)	72, 253
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.