FvH4_5g26440
BZIP Family

BZip transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
17924710 .. 17927266
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26440.t1

Sequence Viewer

Length: 963 bp
ATGGAATTCGGCGGAAATCTTGACTTTTTGGACGACGGCGTTGACGTGATCGGAGAGATCGACTGGGATTTCGTATTCGAGGACGCGAATGGGTTAGACTCGCTCCAGGAGTTGGATAACGCGGCCGTCACGGCGGCGCCTGGGGCTTCGCCTTCTTCGTCGTCGTCATCGACGGTGGAGGATGCTCCGGCGAACGCGGAGTCGGGATCGATTGACACGTGGATCGGCGAGGTGGAGAACATGCTGATGAAAGACGACGACGGGAGTAAGGTGGCTTCGGAGGAGCCGCCTAAGGAGTATTATGAGAACTTTTTGGCGGATATACTCGTGGACTCGCCGTCGACGGAGTCACCCACCGACGTGGATTCAAATTCGAATGGCTCCGCCGAGTCGGACAAGGAGAAAAGCGGTGGATCGCCGATCAACAATGATACGGATGCTGACGCAGACGCTGATGATCCTGTCTCCAAGAAGAGGAGAAGGCAGCTGAGAAATAAGGATGCAGCGATGAGATCAAGGGAGAGGAGAAAAATGTATGTCACAGATCTGGAGATGAAGAGCAAGTACTTGGAAGGCGAATGCAGGAGGCTGGGGCGTTTGCTTCAGTGCTGCTATGCCGAGAACCATGCTTTGCGACTTAGTCTACAGATGGGCAATGCATATGGCCGTGGTGTTTCTGGTACCAAGCAGGAGTCTGCTGTGCTCGTTATGGAACTCCTGCTGTTGGGTTCCCTGCTTTGGTTACTGGACCTCACGTGCCTATTCACCCTGCCTCTAATGCCCCACCTACTACTACTAACTCTAAATCAAGAGCAGGCACACAAAGCTCTAGAAGGTGTGGGTCCAAGAGCAAGAGGGGGAGCAAGTAAGATGATTTTGGCACTTCAGTCTCAATCTTTTGTAAAGACTAGGAGGTGCAAGGCGTCGAGGACGAAGATGAAATATGCTTTTCTTGTCTCTTGA

Protein Analysis

321

Amino Acids

35.0

Weight (kDa)

4.73

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 156 - 197 9.2e-07 Basic region leucine zipper
bZIP_1 PF00170 157 - 197 6.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 2 cut(s) 136, 680
AccB7I CCANNNNNTGG 1 cut(s) 112
AccI GTMKAC 2 cut(s) 341, 643
AccII CGCG 3 cut(s) 86, 122, 197
AciI CCGC 8 cut(s) 12, 122, 134, 197, 287, 317, 384, 408
AclWI GGATC 4 cut(s) 214, 230, 421, 452
AcoI YGGCCR 2 cut(s) 123, 664
AcsI RAATTY 2 cut(s) 5, 370
AcuI CTGAAG 2 cut(s) 587, 869
AcvI CACGTG 2 cut(s) 219, 756
AcyI GRCGYC 2 cut(s) 137, 923
AfaI GTAC 2 cut(s) 566, 682
AfiI CCNNNNNNNGG 4 cut(s) 112, 474, 724, 738
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 369
AhdI GACNNNNNGTC 1 cut(s) 337
AjiI CACGTC 2 cut(s) 46, 361
AjnI CCWGG 2 cut(s) 105, 139
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 2 cut(s) 487, 827
AluI AGCT 2 cut(s) 487, 827
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 2 cut(s) 469, 894
AlwI GGATC 4 cut(s) 214, 230, 421, 452
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 2 cut(s) 123, 664
ApeKI GCWGC 3 cut(s) 484, 503, 609
ApoI RAATTY 2 cut(s) 5, 370
ArsI GACNNNNNNTTYG 4 cut(s) 53, 85, 185, 217
Asp718I GGTACC 1 cut(s) 680
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 748, 842
AsuHPI GGTGA 2 cut(s) 342, 757
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 748, 842
AxyI CCTNAGG 1 cut(s) 291
BanI GGYRCC 2 cut(s) 136, 680
BarI GAAGNNNNNNTAC 4 cut(s) 259, 291, 548, 580
BauI CACGAG 1 cut(s) 326
BbrPI CACGTG 2 cut(s) 219, 756
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 496, 515, 596
BccI CCATC 1 cut(s) 643
BceAI ACGGC 5 cut(s) 52, 110, 147, 322, 651
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 2 cut(s) 107, 141
BcoDI GTCTC 2 cut(s) 469, 894
BfaI CTAG 2 cut(s) 830, 909
BfmI CTRYAG 1 cut(s) 644
BfoI RGCGCY 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 131
BglII AGATCT 1 cut(s) 544
BisI GCNGC 6 cut(s) 123, 135, 287, 485, 504, 610
BlsI GCNGC 6 cut(s) 124, 136, 288, 486, 505, 611
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 107, 141
Bme18I GGWCC 2 cut(s) 748, 842
BmeRI GACNNNNNGTC 1 cut(s) 337
BmgBI CACGTC 2 cut(s) 46, 361
BmgT120I GGNCC 2 cut(s) 748, 842
BmiI GGNNCC 6 cut(s) 138, 285, 382, 682, 730, 843
BmrFI CCNGG 2 cut(s) 107, 141
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 3 cut(s) 172, 427, 490
BmuI ACTGGG 1 cut(s) 73
BpmI CTGGAG 2 cut(s) 89, 569
Bpu14I TTCGAA 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 209
BsaAI YACGTR 2 cut(s) 219, 756
BsaHI GRCGYC 2 cut(s) 137, 923
BsaJI CCNNGG 2 cut(s) 140, 667
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 474, 724, 738
Bse1I ACTGG 2 cut(s) 68, 750
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 2 cut(s) 107, 141
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 140, 667
BseGI GGATG 3 cut(s) 187, 442, 505
BseLI CCNNNNNNNGG 4 cut(s) 112, 474, 724, 738
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 68, 750
BseRI GAGGAG 3 cut(s) 296, 490, 538
BseX3I CGGCCG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 496, 515, 596
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 3 cut(s) 86, 122, 197
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 125, 666
BshNI GGYRCC 2 cut(s) 136, 680
BshVI ATCGAT 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 4 cut(s) 112, 474, 724, 738
BsmAI GTCTC 2 cut(s) 469, 894
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 125, 666
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
BspACI CCGC 8 cut(s) 12, 122, 134, 197, 287, 317, 384, 408
BspANI GGCC 2 cut(s) 125, 666
BspCNI CTCAG 1 cut(s) 480
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 3 cut(s) 86, 122, 197
BspLI GGNNCC 6 cut(s) 138, 285, 382, 682, 730, 843
BspPI GGATC 4 cut(s) 214, 230, 421, 452
BspQI GCTCTTC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 136, 680
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 2 cut(s) 68, 750
BssECI CCNNGG 2 cut(s) 140, 667
BssMI GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
BssNI GRCGYC 2 cut(s) 137, 923
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 107, 141
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 467, 551
BstACI GRCGYC 2 cut(s) 137, 923
BstBAI YACGTR 2 cut(s) 219, 756
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 3 cut(s) 291, 488, 638
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 3 cut(s) 187, 442, 505
BstFNI CGCG 3 cut(s) 86, 122, 197
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 9 cut(s) 51, 60, 209, 225, 416, 423, 460, 515, 547
BstMAI GTCTC 2 cut(s) 469, 894
BstMBI GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 4 cut(s) 131, 143, 778, 824
BstNI CCWGG 2 cut(s) 107, 141
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 105, 139
BstSFI CTRYAG 1 cut(s) 644
BstUI CGCG 3 cut(s) 86, 122, 197
BstV1I GCAGC 3 cut(s) 496, 515, 596
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 2 cut(s) 125, 666
BsuTUI ATCGAT 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 667
BtgZI GCGATG 1 cut(s) 521
BtrI CACGTC 2 cut(s) 46, 361
BtsCI GGATG 3 cut(s) 187, 442, 505
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 1 cut(s) 816
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 748, 842
ClaI ATCGAT 1 cut(s) 209
CseI GACGC 4 cut(s) 92, 452, 458, 912
Csp6I GTAC 2 cut(s) 565, 681
CviAII CATG 2 cut(s) 241, 626
CviJI RGCY 9 cut(s) 125, 146, 275, 286, 381, 487, 589, 666, 827
CviKI_1 RGCY 9 cut(s) 125, 146, 275, 286, 381, 487, 589, 666, 827
CviQI GTAC 2 cut(s) 565, 681
DdeI CTNAG 3 cut(s) 291, 488, 638
DinI GGCGCC 1 cut(s) 138
DpnI GATC 9 cut(s) 50, 59, 208, 224, 415, 422, 459, 514, 546
DpnII GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
DriI GACNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 2 cut(s) 123, 664
EagI CGGCCG 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 467, 551
Eam1105I GACNNNNNGTC 1 cut(s) 337
EarI CTCTTC 2 cut(s) 467, 551
EciI GGCGGA 3 cut(s) 27, 332, 373
EclXI CGGCCG 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 748, 842
Eco52I CGGCCG 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 587, 869
Eco72I CACGTG 2 cut(s) 219, 756
Eco81I CCTNAGG 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 105, 139
EcoT22I ATGCAT 1 cut(s) 661
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
FaeI CATG 2 cut(s) 244, 629
FatI CATG 2 cut(s) 240, 625
FauNDI CATATG 1 cut(s) 661
FblI GTMKAC 2 cut(s) 341, 643
Fnu4HI GCNGC 6 cut(s) 123, 135, 287, 485, 504, 610
FokI GGATG 3 cut(s) 194, 449, 512
Fsp4HI GCNGC 6 cut(s) 123, 135, 287, 485, 504, 610
FspBI CTAG 2 cut(s) 830, 909
GlaI GCGC 1 cut(s) 138
GluI GCNGC 6 cut(s) 123, 135, 287, 485, 504, 610
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 2 cut(s) 89, 569
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 125, 666
HapII CCGG 1 cut(s) 188
HgaI GACGC 4 cut(s) 92, 452, 458, 912
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 2 cut(s) 137, 923
Hin1II CATG 2 cut(s) 244, 629
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 2 cut(s) 43, 342
HindII GTYRAC 2 cut(s) 43, 342
HinfI GANTC 7 cut(s) 98, 200, 332, 347, 365, 389, 692
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 342, 757
Hpy166II GTNNAC 4 cut(s) 43, 331, 342, 644
Hpy188I TCNGA 3 cut(s) 53, 280, 394
Hpy188III TCNNGA 6 cut(s) 20, 204, 548, 809, 830, 960
Hpy8I GTNNAC 4 cut(s) 43, 331, 342, 644
HpyAV CCTTC 4 cut(s) 162, 474, 566, 827
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 4 cut(s) 45, 218, 360, 755
HpyCH4V TGCA 4 cut(s) 503, 582, 659, 918
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 143, 778, 824
HpyF3I CTNAG 3 cut(s) 291, 488, 638
HpySE526I ACGT 4 cut(s) 45, 218, 360, 755
Hsp92I GRCGYC 2 cut(s) 137, 923
Hsp92II CATG 2 cut(s) 244, 629
HspAI GCGC 1 cut(s) 137
KasI GGCGCC 1 cut(s) 136
KpnI GGTACC 1 cut(s) 684
Kzo9I GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 5 cut(s) 108, 190, 283, 386, 860
Lsp1109I GCAGC 3 cut(s) 496, 515, 596
LweI GCATC 3 cut(s) 172, 427, 490
MaeI CTAG 2 cut(s) 830, 909
MaeII ACGT 4 cut(s) 45, 218, 360, 755
MaeIII GTNAC 4 cut(s) 127, 348, 538, 741
MalI GATC 9 cut(s) 50, 59, 208, 224, 415, 422, 459, 514, 546
MboI GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
MboII GAAGA 4 cut(s) 147, 484, 568, 946
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 2 cut(s) 5, 370
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 6 cut(s) 92, 209, 326, 356, 398, 701
MmeI TCCRAC 2 cut(s) 93, 372
Mph1103I ATGCAT 1 cut(s) 661
MslI CAYNNNNRTG 2 cut(s) 245, 359
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 107, 141
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 107, 141
MvnI CGCG 3 cut(s) 86, 122, 197
MwoI GCNNNNNNNGC 4 cut(s) 131, 143, 778, 824
NarI GGCGCC 1 cut(s) 137
NdeI CATATG 1 cut(s) 661
NdeII GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
NlaIII CATG 2 cut(s) 244, 629
NlaIV GGNNCC 6 cut(s) 138, 285, 382, 682, 730, 843
NmeAIII GCCGAG 2 cut(s) 412, 643
NmuCI GTSAC 3 cut(s) 127, 348, 538
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 5 cut(s) 42, 57, 155, 167, 215
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 365
PflFI GACNNNGTC 2 cut(s) 346, 639
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 6 cut(s) 124, 136, 288, 486, 505, 611
PleI GAGTC 6 cut(s) 92, 208, 326, 355, 397, 700
PluTI GGCGCC 1 cut(s) 140
PmaCI CACGTG 2 cut(s) 219, 756
PmlI CACGTG 2 cut(s) 219, 756
PpsI GAGTC 6 cut(s) 92, 208, 326, 355, 397, 700
Ppu21I YACGTR 2 cut(s) 219, 756
Psp6I CCWGG 2 cut(s) 105, 139
PspCI CACGTG 2 cut(s) 219, 756
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 105, 139
PspN4I GGNNCC 6 cut(s) 138, 285, 382, 682, 730, 843
PspPI GGNCC 2 cut(s) 748, 842
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 544
PsyI GACNNNGTC 2 cut(s) 346, 639
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 2 cut(s) 566, 682
RsaNI GTAC 2 cut(s) 565, 681
RseI CAYNNNNRTG 2 cut(s) 245, 359
SalI GTCGAC 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 551
SatI GCNGC 6 cut(s) 123, 135, 287, 485, 504, 610
Sau3AI GATC 9 cut(s) 48, 57, 206, 222, 413, 420, 457, 512, 544
Sau96I GGNCC 2 cut(s) 748, 842
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 6 cut(s) 92, 209, 326, 356, 398, 701
ScrFI CCNGG 2 cut(s) 107, 141
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 3 cut(s) 172, 427, 490
SfcI CTRYAG 1 cut(s) 644
SfoI GGCGCC 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 374
SgrDI CGTCGACG 1 cut(s) 340
SinI GGWCC 2 cut(s) 748, 842
SmiMI CAYNNNNRTG 2 cut(s) 245, 359
Sse9I AATT 2 cut(s) 5, 370
SsiI CCGC 8 cut(s) 12, 122, 134, 197, 287, 317, 384, 408
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 2 cut(s) 830, 909
StyD4I CCNGG 2 cut(s) 105, 139
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 4 cut(s) 48, 221, 363, 758
TaqI TCGA 7 cut(s) 60, 78, 170, 209, 341, 374, 926
TasI AATT 2 cut(s) 5, 370
TatI WGTACW 1 cut(s) 564
TauI GCSGC 3 cut(s) 125, 137, 289
TfiI GAWTC 1 cut(s) 365
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 3 cut(s) 127, 348, 538
TseI GCWGC 3 cut(s) 484, 503, 609
Tsp45I GTSAC 3 cut(s) 127, 348, 538
TspDTI ATGAA 3 cut(s) 263, 569, 953
TspGWI ACGGA 2 cut(s) 359, 449
TspRI CASTG 1 cut(s) 611
Tth111I GACNNNGTC 2 cut(s) 346, 639
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 748, 842
XapI RAATTY 2 cut(s) 5, 370
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 341, 643
XspI CTAG 2 cut(s) 830, 909
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.