BZip transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42990 |
| fragaria_vesca | FvH4_5g26440 |
| malus_domestica | MD06G1002100.v1.1 |
| prunus_persica | Prupe.5G003000_v2.0.a1 |
| pyrus_communis | pycom06g00220 |
| rosa_chinensis | RchiOBHm_Chr7g0217321 |
| rosa_laevigata | RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053 |
| rosa_multiflora | Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00242450 |
| rosa_rugosa | Rorug02G0159300 Rorug07G0168000 |
| rosa_samantha | Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800 |
| rosa_wichuraiana | Rw7G026080 Rw7G029750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 680 |
| AccB1I | GGYRCC | 2 cut(s) | 136, 680 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 112 |
| AccI | GTMKAC | 2 cut(s) | 341, 643 |
| AccII | CGCG | 3 cut(s) | 86, 122, 197 |
| AciI | CCGC | 8 cut(s) | 12, 122, 134, 197, 287, 317, 384, 408 |
| AclWI | GGATC | 4 cut(s) | 214, 230, 421, 452 |
| AcoI | YGGCCR | 2 cut(s) | 123, 664 |
| AcsI | RAATTY | 2 cut(s) | 5, 370 |
| AcuI | CTGAAG | 2 cut(s) | 587, 869 |
| AcvI | CACGTG | 2 cut(s) | 219, 756 |
| AcyI | GRCGYC | 2 cut(s) | 137, 923 |
| AfaI | GTAC | 2 cut(s) | 566, 682 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 112, 474, 724, 738 |
| AflIII | ACRYGT | 1 cut(s) | 216 |
| AgsI | TTSAA | 1 cut(s) | 369 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 337 |
| AjiI | CACGTC | 2 cut(s) | 46, 361 |
| AjnI | CCWGG | 2 cut(s) | 105, 139 |
| AleI | CACNNNNGTG | 1 cut(s) | 359 |
| AluBI | AGCT | 2 cut(s) | 487, 827 |
| AluI | AGCT | 2 cut(s) | 487, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 705 |
| Alw26I | GTCTC | 2 cut(s) | 469, 894 |
| AlwI | GGATC | 4 cut(s) | 214, 230, 421, 452 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 452 |
| AoxI | GGCC | 2 cut(s) | 123, 664 |
| ApeKI | GCWGC | 3 cut(s) | 484, 503, 609 |
| ApoI | RAATTY | 2 cut(s) | 5, 370 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 53, 85, 185, 217 |
| Asp718I | GGTACC | 1 cut(s) | 680 |
| AspLEI | GCGC | 1 cut(s) | 139 |
| AspS9I | GGNCC | 2 cut(s) | 748, 842 |
| AsuHPI | GGTGA | 2 cut(s) | 342, 757 |
| AsuII | TTCGAA | 1 cut(s) | 374 |
| AvaII | GGWCC | 2 cut(s) | 748, 842 |
| AxyI | CCTNAGG | 1 cut(s) | 291 |
| BanI | GGYRCC | 2 cut(s) | 136, 680 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 259, 291, 548, 580 |
| BauI | CACGAG | 1 cut(s) | 326 |
| BbrPI | CACGTG | 2 cut(s) | 219, 756 |
| Bbv12I | GWGCWC | 1 cut(s) | 705 |
| BbvI | GCAGC | 3 cut(s) | 496, 515, 596 |
| BccI | CCATC | 1 cut(s) | 643 |
| BceAI | ACGGC | 5 cut(s) | 52, 110, 147, 322, 651 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 608, 642 |
| BciT130I | CCWGG | 2 cut(s) | 107, 141 |
| BcoDI | GTCTC | 2 cut(s) | 469, 894 |
| BfaI | CTAG | 2 cut(s) | 830, 909 |
| BfmI | CTRYAG | 1 cut(s) | 644 |
| BfoI | RGCGCY | 1 cut(s) | 140 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 131 |
| BglII | AGATCT | 1 cut(s) | 544 |
| BisI | GCNGC | 6 cut(s) | 123, 135, 287, 485, 504, 610 |
| BlsI | GCNGC | 6 cut(s) | 124, 136, 288, 486, 505, 611 |
| BmcAI | AGTACT | 1 cut(s) | 566 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 141 |
| Bme18I | GGWCC | 2 cut(s) | 748, 842 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 337 |
| BmgBI | CACGTC | 2 cut(s) | 46, 361 |
| BmgT120I | GGNCC | 2 cut(s) | 748, 842 |
| BmiI | GGNNCC | 6 cut(s) | 138, 285, 382, 682, 730, 843 |
| BmrFI | CCNGG | 2 cut(s) | 107, 141 |
| BmrI | ACTGGG | 1 cut(s) | 73 |
| BmsI | GCATC | 3 cut(s) | 172, 427, 490 |
| BmuI | ACTGGG | 1 cut(s) | 73 |
| BpmI | CTGGAG | 2 cut(s) | 89, 569 |
| Bpu14I | TTCGAA | 1 cut(s) | 374 |
| Bsa29I | ATCGAT | 1 cut(s) | 209 |
| BsaAI | YACGTR | 2 cut(s) | 219, 756 |
| BsaHI | GRCGYC | 2 cut(s) | 137, 923 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 667 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 112, 474, 724, 738 |
| Bse1I | ACTGG | 2 cut(s) | 68, 750 |
| Bse21I | CCTNAGG | 1 cut(s) | 291 |
| Bse3DI | GCAATG | 1 cut(s) | 661 |
| BseBI | CCWGG | 2 cut(s) | 107, 141 |
| BseCI | ATCGAT | 1 cut(s) | 209 |
| BseDI | CCNNGG | 2 cut(s) | 140, 667 |
| BseGI | GGATG | 3 cut(s) | 187, 442, 505 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 112, 474, 724, 738 |
| BseMI | GCAATG | 1 cut(s) | 661 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseNI | ACTGG | 2 cut(s) | 68, 750 |
| BseRI | GAGGAG | 3 cut(s) | 296, 490, 538 |
| BseX3I | CGGCCG | 1 cut(s) | 123 |
| BseXI | GCAGC | 3 cut(s) | 496, 515, 596 |
| BseYI | CCCAGC | 1 cut(s) | 589 |
| Bsh1236I | CGCG | 3 cut(s) | 86, 122, 197 |
| Bsh1285I | CGRYCG | 1 cut(s) | 126 |
| BshFI | GGCC | 2 cut(s) | 125, 666 |
| BshNI | GGYRCC | 2 cut(s) | 136, 680 |
| BshVI | ATCGAT | 1 cut(s) | 209 |
| BsiEI | CGRYCG | 1 cut(s) | 126 |
| BsiHKAI | GWGCWC | 1 cut(s) | 705 |
| BsiSI | CCGG | 1 cut(s) | 188 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 112, 474, 724, 738 |
| BsmAI | GTCTC | 2 cut(s) | 469, 894 |
| BsmI | GAATGC | 1 cut(s) | 584 |
| BsnI | GGCC | 2 cut(s) | 125, 666 |
| Bsp119I | TTCGAA | 1 cut(s) | 374 |
| Bsp1286I | GDGCHC | 1 cut(s) | 705 |
| Bsp143I | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| BspACI | CCGC | 8 cut(s) | 12, 122, 134, 197, 287, 317, 384, 408 |
| BspANI | GGCC | 2 cut(s) | 125, 666 |
| BspCNI | CTCAG | 1 cut(s) | 480 |
| BspDI | ATCGAT | 1 cut(s) | 209 |
| BspFNI | CGCG | 3 cut(s) | 86, 122, 197 |
| BspLI | GGNNCC | 6 cut(s) | 138, 285, 382, 682, 730, 843 |
| BspPI | GGATC | 4 cut(s) | 214, 230, 421, 452 |
| BspQI | GCTCTTC | 1 cut(s) | 551 |
| BspT104I | TTCGAA | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 2 cut(s) | 136, 680 |
| BsrDI | GCAATG | 1 cut(s) | 661 |
| BsrI | ACTGG | 2 cut(s) | 68, 750 |
| BssECI | CCNNGG | 2 cut(s) | 140, 667 |
| BssMI | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| BssNI | GRCGYC | 2 cut(s) | 137, 923 |
| BssSI | CACGAG | 1 cut(s) | 326 |
| Bst2BI | CACGAG | 1 cut(s) | 326 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 141 |
| Bst4CI | ACNGT | 1 cut(s) | 175 |
| Bst6I | CTCTTC | 2 cut(s) | 467, 551 |
| BstACI | GRCGYC | 2 cut(s) | 137, 923 |
| BstBAI | YACGTR | 2 cut(s) | 219, 756 |
| BstBI | TTCGAA | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 1 cut(s) | 816 |
| BstDEI | CTNAG | 3 cut(s) | 291, 488, 638 |
| BstDSI | CCRYGG | 1 cut(s) | 667 |
| BstF5I | GGATG | 3 cut(s) | 187, 442, 505 |
| BstFNI | CGCG | 3 cut(s) | 86, 122, 197 |
| BstH2I | RGCGCY | 1 cut(s) | 140 |
| BstHHI | GCGC | 1 cut(s) | 139 |
| BstKTI | GATC | 9 cut(s) | 51, 60, 209, 225, 416, 423, 460, 515, 547 |
| BstMAI | GTCTC | 2 cut(s) | 469, 894 |
| BstMBI | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| BstMCI | CGRYCG | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 143, 778, 824 |
| BstNI | CCWGG | 2 cut(s) | 107, 141 |
| BstNSI | RCATGY | 1 cut(s) | 244 |
| BstSCI | CCNGG | 2 cut(s) | 105, 139 |
| BstSFI | CTRYAG | 1 cut(s) | 644 |
| BstUI | CGCG | 3 cut(s) | 86, 122, 197 |
| BstV1I | GCAGC | 3 cut(s) | 496, 515, 596 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BstZI | CGGCCG | 1 cut(s) | 123 |
| Bsu15I | ATCGAT | 1 cut(s) | 209 |
| Bsu36I | CCTNAGG | 1 cut(s) | 291 |
| BsuRI | GGCC | 2 cut(s) | 125, 666 |
| BsuTUI | ATCGAT | 1 cut(s) | 209 |
| BtgI | CCRYGG | 1 cut(s) | 667 |
| BtgZI | GCGATG | 1 cut(s) | 521 |
| BtrI | CACGTC | 2 cut(s) | 46, 361 |
| BtsCI | GGATG | 3 cut(s) | 187, 442, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 611 |
| Cac8I | GCNNGC | 1 cut(s) | 816 |
| CaiI | CAGNNNCTG | 1 cut(s) | 452 |
| CfoI | GCGC | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 2 cut(s) | 748, 842 |
| ClaI | ATCGAT | 1 cut(s) | 209 |
| CseI | GACGC | 4 cut(s) | 92, 452, 458, 912 |
| Csp6I | GTAC | 2 cut(s) | 565, 681 |
| CviAII | CATG | 2 cut(s) | 241, 626 |
| CviJI | RGCY | 9 cut(s) | 125, 146, 275, 286, 381, 487, 589, 666, 827 |
| CviKI_1 | RGCY | 9 cut(s) | 125, 146, 275, 286, 381, 487, 589, 666, 827 |
| CviQI | GTAC | 2 cut(s) | 565, 681 |
| DdeI | CTNAG | 3 cut(s) | 291, 488, 638 |
| DinI | GGCGCC | 1 cut(s) | 138 |
| DpnI | GATC | 9 cut(s) | 50, 59, 208, 224, 415, 422, 459, 514, 546 |
| DpnII | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| DriI | GACNNNNNGTC | 1 cut(s) | 337 |
| EaeI | YGGCCR | 2 cut(s) | 123, 664 |
| EagI | CGGCCG | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 2 cut(s) | 467, 551 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 337 |
| EarI | CTCTTC | 2 cut(s) | 467, 551 |
| EciI | GGCGGA | 3 cut(s) | 27, 332, 373 |
| EclXI | CGGCCG | 1 cut(s) | 123 |
| Eco47I | GGWCC | 2 cut(s) | 748, 842 |
| Eco52I | CGGCCG | 1 cut(s) | 123 |
| Eco57I | CTGAAG | 2 cut(s) | 587, 869 |
| Eco72I | CACGTG | 2 cut(s) | 219, 756 |
| Eco81I | CCTNAGG | 1 cut(s) | 291 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoRII | CCWGG | 2 cut(s) | 105, 139 |
| EcoT22I | ATGCAT | 1 cut(s) | 661 |
| EgeI | GGCGCC | 1 cut(s) | 138 |
| EheI | GGCGCC | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 244, 629 |
| FatI | CATG | 2 cut(s) | 240, 625 |
| FauNDI | CATATG | 1 cut(s) | 661 |
| FblI | GTMKAC | 2 cut(s) | 341, 643 |
| Fnu4HI | GCNGC | 6 cut(s) | 123, 135, 287, 485, 504, 610 |
| FokI | GGATG | 3 cut(s) | 194, 449, 512 |
| Fsp4HI | GCNGC | 6 cut(s) | 123, 135, 287, 485, 504, 610 |
| FspBI | CTAG | 2 cut(s) | 830, 909 |
| GlaI | GCGC | 1 cut(s) | 138 |
| GluI | GCNGC | 6 cut(s) | 123, 135, 287, 485, 504, 610 |
| GsaI | CCCAGC | 1 cut(s) | 593 |
| GsuI | CTGGAG | 2 cut(s) | 89, 569 |
| HaeII | RGCGCY | 1 cut(s) | 140 |
| HaeIII | GGCC | 2 cut(s) | 125, 666 |
| HapII | CCGG | 1 cut(s) | 188 |
| HgaI | GACGC | 4 cut(s) | 92, 452, 458, 912 |
| HhaI | GCGC | 1 cut(s) | 139 |
| Hin1I | GRCGYC | 2 cut(s) | 137, 923 |
| Hin1II | CATG | 2 cut(s) | 244, 629 |
| Hin6I | GCGC | 1 cut(s) | 137 |
| HinP1I | GCGC | 1 cut(s) | 137 |
| HincII | GTYRAC | 2 cut(s) | 43, 342 |
| HindII | GTYRAC | 2 cut(s) | 43, 342 |
| HinfI | GANTC | 7 cut(s) | 98, 200, 332, 347, 365, 389, 692 |
| HpaII | CCGG | 1 cut(s) | 188 |
| HphI | GGTGA | 2 cut(s) | 342, 757 |
| Hpy166II | GTNNAC | 4 cut(s) | 43, 331, 342, 644 |
| Hpy188I | TCNGA | 3 cut(s) | 53, 280, 394 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 204, 548, 809, 830, 960 |
| Hpy8I | GTNNAC | 4 cut(s) | 43, 331, 342, 644 |
| HpyAV | CCTTC | 4 cut(s) | 162, 474, 566, 827 |
| HpyCH4III | ACNGT | 1 cut(s) | 175 |
| HpyCH4IV | ACGT | 4 cut(s) | 45, 218, 360, 755 |
| HpyCH4V | TGCA | 4 cut(s) | 503, 582, 659, 918 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 143, 778, 824 |
| HpyF3I | CTNAG | 3 cut(s) | 291, 488, 638 |
| HpySE526I | ACGT | 4 cut(s) | 45, 218, 360, 755 |
| Hsp92I | GRCGYC | 2 cut(s) | 137, 923 |
| Hsp92II | CATG | 2 cut(s) | 244, 629 |
| HspAI | GCGC | 1 cut(s) | 137 |
| KasI | GGCGCC | 1 cut(s) | 136 |
| KpnI | GGTACC | 1 cut(s) | 684 |
| Kzo9I | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| LguI | GCTCTTC | 1 cut(s) | 551 |
| LmnI | GCTCC | 5 cut(s) | 108, 190, 283, 386, 860 |
| Lsp1109I | GCAGC | 3 cut(s) | 496, 515, 596 |
| LweI | GCATC | 3 cut(s) | 172, 427, 490 |
| MaeI | CTAG | 2 cut(s) | 830, 909 |
| MaeII | ACGT | 4 cut(s) | 45, 218, 360, 755 |
| MaeIII | GTNAC | 4 cut(s) | 127, 348, 538, 741 |
| MalI | GATC | 9 cut(s) | 50, 59, 208, 224, 415, 422, 459, 514, 546 |
| MboI | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| MboII | GAAGA | 4 cut(s) | 147, 484, 568, 946 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MhlI | GDGCHC | 1 cut(s) | 705 |
| MluCI | AATT | 2 cut(s) | 5, 370 |
| Mly113I | GGCGCC | 1 cut(s) | 137 |
| MlyI | GAGTC | 6 cut(s) | 92, 209, 326, 356, 398, 701 |
| MmeI | TCCRAC | 2 cut(s) | 93, 372 |
| Mph1103I | ATGCAT | 1 cut(s) | 661 |
| MslI | CAYNNNNRTG | 2 cut(s) | 245, 359 |
| MspA1I | CMGCKG | 1 cut(s) | 487 |
| MspI | CCGG | 1 cut(s) | 188 |
| MspR9I | CCNGG | 2 cut(s) | 107, 141 |
| Mva1269I | GAATGC | 1 cut(s) | 584 |
| MvaI | CCWGG | 2 cut(s) | 107, 141 |
| MvnI | CGCG | 3 cut(s) | 86, 122, 197 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 143, 778, 824 |
| NarI | GGCGCC | 1 cut(s) | 137 |
| NdeI | CATATG | 1 cut(s) | 661 |
| NdeII | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| NlaIII | CATG | 2 cut(s) | 244, 629 |
| NlaIV | GGNNCC | 6 cut(s) | 138, 285, 382, 682, 730, 843 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 643 |
| NmuCI | GTSAC | 3 cut(s) | 127, 348, 538 |
| NsiI | ATGCAT | 1 cut(s) | 661 |
| NspI | RCATGY | 1 cut(s) | 244 |
| NspV | TTCGAA | 1 cut(s) | 374 |
| OliI | CACNNNNGTG | 1 cut(s) | 359 |
| PciSI | GCTCTTC | 1 cut(s) | 551 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 42, 57, 155, 167, 215 |
| PctI | GAATGC | 1 cut(s) | 584 |
| PfeI | GAWTC | 1 cut(s) | 365 |
| PflFI | GACNNNGTC | 2 cut(s) | 346, 639 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 112 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 6 cut(s) | 124, 136, 288, 486, 505, 611 |
| PleI | GAGTC | 6 cut(s) | 92, 208, 326, 355, 397, 700 |
| PluTI | GGCGCC | 1 cut(s) | 140 |
| PmaCI | CACGTG | 2 cut(s) | 219, 756 |
| PmlI | CACGTG | 2 cut(s) | 219, 756 |
| PpsI | GAGTC | 6 cut(s) | 92, 208, 326, 355, 397, 700 |
| Ppu21I | YACGTR | 2 cut(s) | 219, 756 |
| Psp6I | CCWGG | 2 cut(s) | 105, 139 |
| PspCI | CACGTG | 2 cut(s) | 219, 756 |
| PspFI | CCCAGC | 1 cut(s) | 589 |
| PspGI | CCWGG | 2 cut(s) | 105, 139 |
| PspN4I | GGNNCC | 6 cut(s) | 138, 285, 382, 682, 730, 843 |
| PspPI | GGNCC | 2 cut(s) | 748, 842 |
| PstNI | CAGNNNCTG | 1 cut(s) | 452 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| PsyI | GACNNNGTC | 2 cut(s) | 346, 639 |
| PvuII | CAGCTG | 1 cut(s) | 487 |
| RsaI | GTAC | 2 cut(s) | 566, 682 |
| RsaNI | GTAC | 2 cut(s) | 565, 681 |
| RseI | CAYNNNNRTG | 2 cut(s) | 245, 359 |
| SalI | GTCGAC | 1 cut(s) | 340 |
| SapI | GCTCTTC | 1 cut(s) | 551 |
| SatI | GCNGC | 6 cut(s) | 123, 135, 287, 485, 504, 610 |
| Sau3AI | GATC | 9 cut(s) | 48, 57, 206, 222, 413, 420, 457, 512, 544 |
| Sau96I | GGNCC | 2 cut(s) | 748, 842 |
| ScaI | AGTACT | 1 cut(s) | 566 |
| SchI | GAGTC | 6 cut(s) | 92, 209, 326, 356, 398, 701 |
| ScrFI | CCNGG | 2 cut(s) | 107, 141 |
| SduI | GDGCHC | 1 cut(s) | 705 |
| SfaNI | GCATC | 3 cut(s) | 172, 427, 490 |
| SfcI | CTRYAG | 1 cut(s) | 644 |
| SfoI | GGCGCC | 1 cut(s) | 138 |
| SfuI | TTCGAA | 1 cut(s) | 374 |
| SgrDI | CGTCGACG | 1 cut(s) | 340 |
| SinI | GGWCC | 2 cut(s) | 748, 842 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 245, 359 |
| Sse9I | AATT | 2 cut(s) | 5, 370 |
| SsiI | CCGC | 8 cut(s) | 12, 122, 134, 197, 287, 317, 384, 408 |
| SspDI | GGCGCC | 1 cut(s) | 136 |
| SspMI | CTAG | 2 cut(s) | 830, 909 |
| StyD4I | CCNGG | 2 cut(s) | 105, 139 |
| TaaI | ACNGT | 1 cut(s) | 175 |
| TaiI | ACGT | 4 cut(s) | 48, 221, 363, 758 |
| TaqI | TCGA | 7 cut(s) | 60, 78, 170, 209, 341, 374, 926 |
| TasI | AATT | 2 cut(s) | 5, 370 |
| TatI | WGTACW | 1 cut(s) | 564 |
| TauI | GCSGC | 3 cut(s) | 125, 137, 289 |
| TfiI | GAWTC | 1 cut(s) | 365 |
| TscAI | CASTG | 1 cut(s) | 611 |
| TseFI | GTSAC | 3 cut(s) | 127, 348, 538 |
| TseI | GCWGC | 3 cut(s) | 484, 503, 609 |
| Tsp45I | GTSAC | 3 cut(s) | 127, 348, 538 |
| TspDTI | ATGAA | 3 cut(s) | 263, 569, 953 |
| TspGWI | ACGGA | 2 cut(s) | 359, 449 |
| TspRI | CASTG | 1 cut(s) | 611 |
| Tth111I | GACNNNGTC | 2 cut(s) | 346, 639 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 112 |
| VpaK11BI | GGWCC | 2 cut(s) | 748, 842 |
| XapI | RAATTY | 2 cut(s) | 5, 370 |
| XbaI | TCTAGA | 1 cut(s) | 829 |
| XceI | RCATGY | 1 cut(s) | 244 |
| XmiI | GTMKAC | 2 cut(s) | 341, 643 |
| XspI | CTAG | 2 cut(s) | 830, 909 |
| ZrmI | AGTACT | 1 cut(s) | 566 |
| Zsp2I | ATGCAT | 1 cut(s) | 661 |