Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Reverse (-)

16236342 .. 16241337

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCGGGTGTACTGATCACTTTTGCACCCAGATCTTCAGGTCTTGGTCTTCGCCTCCAATTCCGGCGACCACCAGTCTCGCCGCCATGTCTCAGATCGGACCCAGCCTTCACCAACCAGAACTCTGACAAAGATTCGATCTCTCTATCTCTCAGCAGCGTTGACGTGATCGGAGAGATCGATTGGGATTTTGTATTCGACGATGCGAATGGGTTAGAATTGTTCCAAGCATTGGAGAACCCGGCCGTCACGGCGGCAACTAGGGCTTCGCCATCTTCATTGTCGTCATCAACGGTGGAGGATGCTCGGGCCAACCCGGAGACGGGATCAATTGACACGTGGATCGGCGAGGTTGAGGGGATGCTGATGAAAGACGATGACGGAAGCAAGGTGGCTTCGGAGGAGCCACCTAAGGAGTACTATGAGAATTTTTTTGGCAGGTGTACTCGTGGACTATCCGTCGACGGAATCTCCGGCCTACGTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

163

Amino Acids

17.57

Weight (kDa)

4.35

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	2 cut(s)	83, 254
AclWI	GGATC	2 cut(s)	334, 350
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	21
AcvI	CACGTG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	12, 419, 445
AfiI	CCNNNNNNNGG	3 cut(s)	232, 322, 323
AflIII	ACRYGT	1 cut(s)	336
AhdI	GACNNNNNGTC	2 cut(s)	74, 458
AjiI	CACGTC	1 cut(s)	166
Alw26I	GTCTC	3 cut(s)	82, 95, 314
AlwI	GGATC	2 cut(s)	334, 350
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	3 cut(s)	243, 309, 475
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	100, 309
AsuC2I	CCSGG	3 cut(s)	6, 242, 317
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	411
BauI	CACGAG	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	230, 267
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	3 cut(s)	6, 242, 317
BcoDI	GTCTC	3 cut(s)	82, 95, 314
BfaI	CTAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	251
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	3 cut(s)	83, 157, 255
BlsI	GCNGC	3 cut(s)	84, 158, 256
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	3 cut(s)	6, 242, 317
Bme18I	GGWCC	1 cut(s)	100
BmeRI	GACNNNNNGTC	2 cut(s)	74, 458
BmeT110I	CYCGRG	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	100, 309
BmiI	GGNNCC	2 cut(s)	102, 405
BmrFI	CCNGG	3 cut(s)	6, 242, 317
BmsI	GCATC	3 cut(s)	193, 292, 351
BpiI	GAAGAC	1 cut(s)	41
BpuMI	CCSGG	3 cut(s)	6, 242, 317
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	2 cut(s)	339, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 322, 323
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	411
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	2 cut(s)	307, 366
BseLI	CCNNNNNNNGG	3 cut(s)	232, 322, 323
BseMII	CTCAG	2 cut(s)	106, 166
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	416
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	245, 311, 477
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	5, 64, 242, 317, 474
BslI	CCNNNNNNNGG	3 cut(s)	232, 322, 323
BsmAI	GTCTC	3 cut(s)	82, 95, 314
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	245, 311, 477
BsoBI	CYCGRG	1 cut(s)	306
Bsp143I	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
BspACI	CCGC	2 cut(s)	83, 254
BspANI	GGCC	3 cut(s)	245, 311, 477
BspCNI	CTCAG	2 cut(s)	105, 165
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	102, 405
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	334, 350
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	295
BstBAI	YACGTR	2 cut(s)	339, 482
BstDEI	CTNAG	3 cut(s)	92, 152, 411
BstF5I	GGATG	2 cut(s)	307, 366
BstKTI	GATC	8 cut(s)	18, 35, 98, 141, 171, 180, 329, 345
BstMAI	GTCTC	3 cut(s)	82, 95, 314
BstMBI	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 263
BstSCI	CCNGG	3 cut(s)	4, 240, 315
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	245, 311, 477
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	307, 366
BveI	ACCTGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	100, 309
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	11, 418, 444
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	7 cut(s)	107, 245, 266, 311, 395, 406, 477
CviKI_1	RGCY	7 cut(s)	107, 245, 266, 311, 395, 406, 477
CviQI	GTAC	3 cut(s)	11, 418, 444
DdeI	CTNAG	3 cut(s)	92, 152, 411
DpnI	GATC	8 cut(s)	17, 34, 97, 140, 170, 179, 328, 344
DpnII	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
DriI	GACNNNNNGTC	2 cut(s)	74, 458
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1105I	GACNNNNNGTC	2 cut(s)	74, 458
EclXI	CGGCCG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 423
FatI	CATG	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	83, 157, 255
FokI	GGATG	2 cut(s)	314, 373
Fsp4HI	GCNGC	3 cut(s)	83, 157, 255
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	3 cut(s)	83, 157, 255
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	245, 311, 477
HapII	CCGG	5 cut(s)	5, 64, 242, 317, 474
Hin1II	CATG	1 cut(s)	90
HincII	GTYRAC	2 cut(s)	163, 463
HindII	GTYRAC	2 cut(s)	163, 463
HinfI	GANTC	3 cut(s)	134, 468, 486
HpaII	CCGG	5 cut(s)	5, 64, 242, 317, 474
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	5 cut(s)	11, 163, 444, 452, 463
Hpy188I	TCNGA	5 cut(s)	95, 100, 127, 173, 400
Hpy8I	GTNNAC	5 cut(s)	11, 163, 444, 452, 463
Hpy99I	CGWCG	3 cut(s)	203, 464, 467
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	3 cut(s)	165, 338, 481
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 263
HpyF3I	CTNAG	3 cut(s)	92, 152, 411
HpySE526I	ACGT	3 cut(s)	165, 338, 481
Hsp92II	CATG	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	3 cut(s)	193, 292, 351
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	165, 338, 481
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	8 cut(s)	17, 34, 97, 140, 170, 179, 328, 344
MboI	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
MboII	GAAGA	3 cut(s)	27, 41, 267
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	4 cut(s)	59, 218, 330, 427
MnlI	CCTC	5 cut(s)	65, 292, 343, 349, 394
MspI	CCGG	5 cut(s)	5, 64, 242, 317, 474
MspR9I	CCNGG	3 cut(s)	6, 242, 317
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	251, 263
NciI	CCSGG	3 cut(s)	6, 242, 317
NdeII	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	102, 405
NmuCI	GTSAC	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	134, 468, 486
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	84, 158, 256
PmaCI	CACGTG	1 cut(s)	339
PmlI	CACGTG	1 cut(s)	339
Ppu21I	YACGTR	2 cut(s)	339, 482
PspCI	CACGTG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	102, 405
PspPI	GGNCC	2 cut(s)	100, 309
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	3 cut(s)	12, 419, 445
RsaNI	GTAC	3 cut(s)	11, 418, 444
SalI	GTCGAC	1 cut(s)	461
SatI	GCNGC	3 cut(s)	83, 157, 255
Sau3AI	GATC	8 cut(s)	15, 32, 95, 138, 168, 177, 326, 342
Sau96I	GGNCC	2 cut(s)	100, 309
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	6, 242, 317
SetI	ASST	8 cut(s)	43, 168, 341, 354, 393, 412, 443, 484
SfaNI	GCATC	3 cut(s)	193, 292, 351
SgrDI	CGTCGACG	1 cut(s)	461
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	4 cut(s)	59, 218, 330, 427
SsiI	CCGC	2 cut(s)	83, 254
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	4, 240, 315
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	3 cut(s)	168, 341, 484
TaqI	TCGA	4 cut(s)	137, 180, 198, 462
TasI	AATT	4 cut(s)	59, 218, 330, 427
TatI	WGTACW	3 cut(s)	10, 417, 443
TauI	GCSGC	2 cut(s)	85, 257
TfiI	GAWTC	3 cut(s)	134, 468, 486
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	267, 383
TspGWI	ACGGA	3 cut(s)	396, 448, 480
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.