Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

41487346 .. 41488993

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTCGGAGCTCCGCAAAGCCCAAATGGGTCTTACCGTTTATGCTTGTTCTTGGTTCTCTGGCTTCTCAAATCTCAGCTGTAGATGATTTGTTGCAAGAGTTGGAGAACCCGACTGTCACAGAGGCAATTAGGCCTTCTTCATCGTCGTCATCAACGGTGGAGCATGGCCAACCTGGAGATGGATCGATTAACACGTGGATCGACGAGGTTGAGGAGATGCTGATGAAAGATGATGACAGAAGCAAGGTGGCTTTGGAGGAGCCACCTAAGGAGTACTGTGAGATTTTTTTTGGCGGATGTACTCGTGGATTCGCCGTCGACGGAATCTCTGGCCGACATGGCTTCGAATTCAAACGGCTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

122

Amino Acids

13.45

Weight (kDa)

4.78

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	2 cut(s)	15, 297
AclWI	GGATC	2 cut(s)	193, 209
AcoI	YGGCCR	2 cut(s)	169, 334
AcsI	RAATTY	1 cut(s)	350
AcvI	CACGTG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	278, 304
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	2 cut(s)	12, 80
AluI	AGCT	2 cut(s)	12, 80
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	193, 209
AoxI	GGCC	3 cut(s)	134, 169, 334
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	366
AsuII	TTCGAA	1 cut(s)	348
AxyI	CCTNAGG	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	188
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	230, 275
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	3 cut(s)	136, 171, 336
BshVI	ATCGAT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	3 cut(s)	136, 171, 336
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	185, 201
BspACI	CCGC	2 cut(s)	15, 297
BspANI	GGCC	3 cut(s)	136, 171, 336
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	193, 209
BspT104I	TTCGAA	1 cut(s)	348
BssMI	GATC	2 cut(s)	185, 201
BssSI	CACGAG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	39, 118, 160, 281
BstBAI	YACGTR	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	76, 270
BstF5I	GGATG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	188, 204
BstMBI	GATC	2 cut(s)	185, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	136, 171, 336
BsuTUI	ATCGAT	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	366
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	277, 303
CviAII	CATG	2 cut(s)	167, 341
CviQI	GTAC	2 cut(s)	277, 303
DdeI	CTNAG	2 cut(s)	76, 270
DpnI	GATC	2 cut(s)	187, 203
DpnII	GATC	2 cut(s)	185, 201
EaeI	YGGCCR	2 cut(s)	169, 334
EciI	GGCGGA	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	2 cut(s)	170, 344
FaiI	YATR	3 cut(s)	44, 168, 342
FatI	CATG	2 cut(s)	166, 340
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	136, 171, 336
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	170, 344
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	2 cut(s)	312, 327
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	4 cut(s)	151, 209, 323, 326
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	4 cut(s)	39, 118, 160, 281
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	2 cut(s)	76, 270
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	170, 344
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	185, 201
LmnI	GCTCC	4 cut(s)	9, 17, 163, 262
LpnPI	CCDG	4 cut(s)	47, 162, 189, 318
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	210
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	187, 203
MboI	GATC	2 cut(s)	185, 201
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	2 cut(s)	129, 350
MluNI	TGGCCA	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	118, 202, 208, 253
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	2 cut(s)	185, 201
NlaIII	CATG	2 cut(s)	170, 344
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	312, 327
PkrI	GCNGC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	198
PmlI	CACGTG	1 cut(s)	198
Ppu21I	YACGTR	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	278, 304
RsaNI	GTAC	2 cut(s)	277, 303
SacI	GAGCTC	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	185, 201
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	7 cut(s)	14, 82, 178, 200, 213, 252, 271
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	348
SgrDI	CGTCGACG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	129, 350
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	15, 297
SstI	GAGCTC	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	39, 118, 160, 281
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	4 cut(s)	188, 204, 321, 348
TasI	AATT	2 cut(s)	129, 350
TatI	WGTACW	2 cut(s)	276, 302
TfiI	GAWTC	2 cut(s)	312, 327
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	132, 242
TspGWI	ACGGA	1 cut(s)	339
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.