Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

62250966 .. 62252899

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCGCGACGTTGACGTGATCGGAGAGATCAATTGGGATTTCGTATTCGACGATGCGAATGGGTTAGATTTGTTGCAAGAGTTGGAGAACCCGGCCGTCACAGCGGCAACTAGGGCTTCACCTTCTTCATTGTCGTCATCAACGGTGGAGGATGCTCTGGCCAACTCGGAGACGGGATCGATTGACAAGTGGATCGGCGAGGTTGAGGAGATGCTGATGAAAGATGATGACGGAAGCAAGGTGGCTTTGGAGGAGCCACCTAGGGAGTACTGTGAGCTTTTTTTTGGCGGATGTACTCGTGGATTCACCGTCGACAGAATCTCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

110

Amino Acids

11.89

Weight (kDa)

4.05

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	6
AciI	CCGC	2 cut(s)	104, 288
AclWI	GGATC	2 cut(s)	184, 200
AcoI	YGGCCR	2 cut(s)	93, 159
AfaI	GTAC	2 cut(s)	269, 295
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	184, 200
AoxI	GGCC	2 cut(s)	93, 159
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	111, 298
AvrII	CCTAGG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	161
BauI	CACGAG	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	111, 261
BisI	GCNGC	1 cut(s)	105
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	43, 142, 201
BpuMI	CCSGG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	260
BsaXI	ACNNNNNCTCC	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	157, 296
BseRI	GAGGAG	2 cut(s)	221, 266
BseX3I	CGGCCG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	95, 161
BshVI	ATCGAT	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	92, 324
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	95, 161
Bsp143I	GATC	4 cut(s)	18, 27, 176, 192
BspACI	CCGC	2 cut(s)	104, 288
BspANI	GGCC	2 cut(s)	95, 161
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	184, 200
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	18, 27, 176, 192
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	145, 272, 310
BstF5I	GGATG	2 cut(s)	157, 296
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	21, 30, 179, 195
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	4 cut(s)	18, 27, 176, 192
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 113
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	6
BstZI	CGGCCG	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	95, 161
BsuTUI	ATCGAT	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	157, 296
CfoI	GCGC	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	268, 294
CviJI	RGCY	7 cut(s)	95, 116, 161, 245, 256, 277, 327
CviKI_1	RGCY	7 cut(s)	95, 116, 161, 245, 256, 277, 327
CviQI	GTAC	2 cut(s)	268, 294
DpnI	GATC	4 cut(s)	20, 29, 178, 194
DpnII	GATC	4 cut(s)	18, 27, 176, 192
EaeI	YGGCCR	2 cut(s)	93, 159
EagI	CGGCCG	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	303
EclXI	CGGCCG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	164, 303
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	111, 261
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	95, 161
HapII	CCGG	2 cut(s)	92, 324
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	13, 313
HindII	GTYRAC	2 cut(s)	13, 313
HinfI	GANTC	2 cut(s)	303, 318
HpaII	CCGG	2 cut(s)	92, 324
HphI	GGTGA	2 cut(s)	111, 298
Hpy166II	GTNNAC	2 cut(s)	13, 313
Hpy188I	TCNGA	2 cut(s)	23, 169
Hpy8I	GTNNAC	2 cut(s)	13, 313
Hpy99I	CGWCG	3 cut(s)	11, 53, 314
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	3 cut(s)	145, 272, 310
HpyCH4IV	ACGT	2 cut(s)	9, 15
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 113
HpySE526I	ACGT	2 cut(s)	9, 15
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	18, 27, 176, 192
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	2 cut(s)	105, 143
LweI	GCATC	3 cut(s)	43, 142, 201
MaeI	CTAG	2 cut(s)	111, 261
MaeII	ACGT	2 cut(s)	9, 15
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	20, 29, 178, 194
MboI	GATC	4 cut(s)	18, 27, 176, 192
MboII	GAAGA	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	1 cut(s)	31
MluNI	TGGCCA	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	142, 193, 199, 244
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	92, 324
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	101, 113
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	18, 27, 176, 192
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	303, 318
PkrI	GCNGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	255
RsaI	GTAC	2 cut(s)	269, 295
RsaNI	GTAC	2 cut(s)	268, 294
SalI	GTCGAC	1 cut(s)	311
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	18, 27, 176, 192
ScaI	AGTACT	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	12, 18, 124, 204, 243, 262, 279
SfaNI	GCATC	3 cut(s)	43, 142, 201
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	104, 288
SspMI	CTAG	2 cut(s)	111, 261
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	145, 272, 310
TaiI	ACGT	2 cut(s)	12, 18
TaqI	TCGA	3 cut(s)	48, 179, 312
TasI	AATT	1 cut(s)	31
TatI	WGTACW	2 cut(s)	267, 293
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	303, 318
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	117, 233
TspGWI	ACGGA	1 cut(s)	246
XmaJI	CCTAGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	111, 261
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.