Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

44305438 .. 44307007

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGATTCCGAGAATTGAACTCGGGACCTTTCGCTCCCTAAGCGAGCATCCTACCACTGGACTAAATCCCCTAAGTTACATGTTTGTTGTACGGTGTTCTCCAAATTTGATGGTAGGATCAATGTGGTCCTCTCCCCTTCCGGCAGTGAGCTACAATCCAAACTTTATCAGCAGAAGCCAGAAGTGGCCTTGCCGCCGTCTCTCAGATCAGACCCAGCCTTCACCAACCCGAACTCTGACAAAGATTAGATCTCTCAATTGGGATTTCGTATTCAACGATGCGAATGGGTTAGAATTGTTGCAAGAGTTGGAGAACCCGGCCGTCACGACGGTAGCTAGGACTTCGCCTTCTTCATTGTCGTCATTAATGGTGGAGGATGCTCTGGCCAACCCGGAGATGGGATCGATTGACGGGTGGTTCAGCGAGGTTGAGGAGATGCTGATGAAAGACGATGACGGAAGCAAGGTGGCTTTGGAGGAGCCACCTAAGGAGTACTATGAGAATTTTTTTGGCGGATGTACTCGTGGACTCGCCGTCGACGGAATCTTCGGCCTACATGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

190

Amino Acids

21.02

Weight (kDa)

4.76

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	540
AciI	CCGC	2 cut(s)	196, 516
AclWI	GGATC	2 cut(s)	127, 412
AcoI	YGGCCR	2 cut(s)	321, 387
AcsI	RAATTY	2 cut(s)	106, 505
AfaI	GTAC	3 cut(s)	93, 497, 523
AfiI	CCNNNNNNNGG	3 cut(s)	59, 400, 401
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	20, 277
AhdI	GACNNNNNGTC	1 cut(s)	536
AluBI	AGCT	2 cut(s)	153, 338
AluI	AGCT	2 cut(s)	153, 338
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	127, 412
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	4 cut(s)	188, 321, 387, 553
ApoI	RAATTY	2 cut(s)	106, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AseI	ATTAAT	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	27, 129
AsuC2I	CCSGG	2 cut(s)	320, 395
AsuHPI	GGTGA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	27, 129
AxyI	CCTNAGG	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	389
BauI	CACGAG	1 cut(s)	525
BccI	CCATC	2 cut(s)	106, 394
BceAI	ACGGC	3 cut(s)	183, 308, 521
BcnI	CCSGG	2 cut(s)	320, 395
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	320, 395
Bme18I	GGWCC	2 cut(s)	27, 129
BmeRI	GACNNNNNGTC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	27, 129
BmiI	GGNNCC	2 cut(s)	28, 483
BmrFI	CCNGG	2 cut(s)	320, 395
BmsI	GCATC	4 cut(s)	58, 271, 370, 429
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	320, 395
Bsa29I	ATCGAT	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 400, 401
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	407
BseGI	GGATG	3 cut(s)	49, 385, 524
BseLI	CCNNNNNNNGG	3 cut(s)	59, 400, 401
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	449, 494
BseX3I	CGGCCG	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	4 cut(s)	190, 323, 389, 555
BshVI	ATCGAT	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	143, 320, 395
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	59, 400, 401
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	4 cut(s)	190, 323, 389, 555
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	119, 208, 251, 404
BspACI	CCGC	2 cut(s)	196, 516
BspANI	GGCC	4 cut(s)	190, 323, 389, 555
BspCNI	CTCAG	1 cut(s)	218
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	28, 483
BspPI	GGATC	2 cut(s)	127, 412
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	4 cut(s)	119, 208, 251, 404
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	96, 334
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	41, 74, 205, 489
BstF5I	GGATG	3 cut(s)	49, 385, 524
BstKTI	GATC	4 cut(s)	122, 211, 254, 407
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	4 cut(s)	119, 208, 251, 404
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	318, 393
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BstZI	CGGCCG	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	190, 323, 389, 555
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	49, 385, 524
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	57, 153
Cac8I	GCNNGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	27, 129
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	92, 496, 522
CviAII	CATG	2 cut(s)	82, 560
CviQI	GTAC	3 cut(s)	92, 496, 522
DdeI	CTNAG	4 cut(s)	41, 74, 205, 489
DpnI	GATC	4 cut(s)	121, 210, 253, 406
DpnII	GATC	4 cut(s)	119, 208, 251, 404
DriI	GACNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	2 cut(s)	321, 387
EagI	CGGCCG	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	27, 129
Eco52I	CGGCCG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	2 cut(s)	85, 563
FaiI	YATR	3 cut(s)	83, 501, 561
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	81, 559
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	3 cut(s)	36, 392, 531
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	190, 323, 389, 555
HapII	CCGG	3 cut(s)	143, 320, 395
Hin1II	CATG	2 cut(s)	85, 563
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	4 cut(s)	7, 531, 546, 564
HpaII	CCGG	3 cut(s)	143, 320, 395
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	530, 541
Hpy188I	TCNGA	4 cut(s)	12, 208, 213, 240
Hpy188III	TCNNGA	2 cut(s)	25, 328
Hpy8I	GTNNAC	2 cut(s)	530, 541
Hpy99I	CGWCG	3 cut(s)	334, 542, 545
HpyAV	CCTTC	3 cut(s)	149, 231, 360
HpyCH4III	ACNGT	2 cut(s)	96, 334
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	4 cut(s)	41, 74, 205, 489
Hsp92II	CATG	2 cut(s)	85, 563
Kzo9I	GATC	4 cut(s)	119, 208, 251, 404
LmnI	GCTCC	2 cut(s)	41, 481
LpnPI	CCDG	7 cut(s)	45, 156, 194, 230, 333, 371, 408
LweI	GCATC	4 cut(s)	58, 271, 370, 429
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	77, 325
MalI	GATC	4 cut(s)	121, 210, 253, 406
MboI	GATC	4 cut(s)	119, 208, 251, 404
MboII	GAAGA	2 cut(s)	345, 541
MfeI	CAATTG	1 cut(s)	259
MflI	RGATCY	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	5 cut(s)	15, 106, 259, 296, 505
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	142, 370, 421, 427, 472
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	3 cut(s)	143, 320, 395
MspR9I	CCNGG	2 cut(s)	320, 395
MunI	CAATTG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	320, 395
NdeII	GATC	4 cut(s)	119, 208, 251, 404
NlaIII	CATG	2 cut(s)	85, 563
NlaIV	GGNNCC	2 cut(s)	28, 483
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	85
PciI	ACATGT	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	7, 546, 564
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	28, 483
PspPI	GGNCC	2 cut(s)	27, 129
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	3 cut(s)	93, 497, 523
RsaNI	GTAC	3 cut(s)	92, 496, 522
SalI	GTCGAC	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	4 cut(s)	119, 208, 251, 404
Sau96I	GGNCC	2 cut(s)	27, 129
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	320, 395
SetI	ASST	6 cut(s)	32, 155, 340, 432, 471, 490
SfaNI	GCATC	4 cut(s)	58, 271, 370, 429
SgrDI	CGTCGACG	1 cut(s)	539
SinI	GGWCC	2 cut(s)	27, 129
Sse9I	AATT	5 cut(s)	15, 106, 259, 296, 505
SsiI	CCGC	2 cut(s)	196, 516
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	318, 393
TaaI	ACNGT	2 cut(s)	96, 334
TaqI	TCGA	2 cut(s)	407, 540
TasI	AATT	5 cut(s)	15, 106, 259, 296, 505
TatI	WGTACW	2 cut(s)	495, 521
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	7, 546, 564
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	64, 153
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	345, 461
TspGWI	ACGGA	2 cut(s)	474, 558
TspRI	CASTG	2 cut(s)	64, 153
VpaK11BI	GGWCC	2 cut(s)	27, 129
VspI	ATTAAT	1 cut(s)	368
XapI	RAATTY	2 cut(s)	106, 505
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.