Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

434425 .. 435739

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAATTGGAAGGAGATGTTGGATTTCTGGATGAGAATGACATAATCGGAGAAATCGATTGGGATTTTTTGTTCGACGGCTCAAATACCTTGGAGGATGTGTTGGAGTTGGAAAATCCAGTCGTCACGGCGACTGGTTCATCATCACCATCACCATCATCAACGGTGGAGGATGCTCCCTCCGACTCATCCCCGGATTGGATCGGCGAGATCGAGACCATTCTGATGAAAGACGACGATGTCAACGGCAACCAGGTTGTTCCGGATTCGGTGGAGCCCACTAATGCTGAATATTATGAGAAGTTTTTGGCGGATGTACTCGTCGACTCGCCTTCCACCGATGCCGGTTCCAACGCCTCCGCCGACTCCGAGAAGGAGAAACTCGACCGATCCCCGCTCAACGATGACGATGACGATGACGATGACGCTGCTGACGCCGACGCCGACGATCCTATCTCCAAGAAAAGGAGAAGGCAGCTGAGAAACAAGGATGCAGCGGTGAGATCAAGGGAGAGGAAAAAGATTTATGTGAGGGATCTGGAGATGAAGAGCAAGTACTTGGAAGGCGAATGCAGGAGACTGGGGCGTTTGCTCCAGTGCTGCTACGCTGAGAATCACGCTTTGCGCCTCGGTTTGCAGATGAACAATGCTTATGGGCATGGACATGGTGTTTTGGCCACCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAACTCCTGCTGTTGGGTTCCCTGCTTCGGTGCCTGGACATCATGTGCCTCGTTGCTCTGCCTCTAATTCTGATGGCCGGACTAAGAAATCCACTGAACAACGTGGCGGCAAACAAAGATCTAGAAAATGTGGATCTAAGGCCAAGAGGGGCAGCAAGTAAGATGTTTCAACATTCGGTGCTCCTATGTTTTTCTAAAAGTAGGAGATGCAAAGCGTCGAGGACAAAGATGAAACATAGTCGATTTCCTTGTTTATTGGGTTCTTATGTGAGCTTTGCTCTCCCGCTTCTAATGTTAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

338

Amino Acids

37.27

Weight (kDa)

4.69

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	738
AccBSI	CCGCTC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	6 cut(s)	311, 360, 395, 497, 815, 992
AclWI	GGATC	5 cut(s)	209, 384, 443, 543, 849
AcoI	YGGCCR	2 cut(s)	675, 783
AcyI	GRCGYC	2 cut(s)	435, 441
AfaI	GTAC	2 cut(s)	318, 557
AfiI	CCNNNNNNNGG	4 cut(s)	198, 465, 721, 735
AgsI	TTSAA	1 cut(s)	878
AjnI	CCWGG	2 cut(s)	252, 741
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	478, 981
AluI	AGCT	2 cut(s)	478, 981
Alw21I	GWGCWC	2 cut(s)	702, 891
Alw26I	GTCTC	2 cut(s)	209, 571
AlwI	GGATC	5 cut(s)	209, 384, 443, 543, 849
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	3 cut(s)	675, 783, 848
ApeKI	GCWGC	5 cut(s)	428, 475, 494, 600, 860
AspLEI	GCGC	1 cut(s)	627
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	138, 144, 511
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	279
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
Bbv12I	GWGCWC	2 cut(s)	702, 891
BbvI	GCAGC	5 cut(s)	415, 487, 506, 587, 872
BccI	CCATC	3 cut(s)	157, 163, 775
BceAI	ACGGC	3 cut(s)	94, 144, 262
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	254, 743
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	209, 571
BfaI	CTAG	1 cut(s)	830
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	6 cut(s)	429, 476, 495, 601, 816, 861
BlsI	GCNGC	6 cut(s)	430, 477, 496, 602, 817, 862
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	3 cut(s)	194, 254, 743
BmiI	GGNNCC	4 cut(s)	276, 349, 727, 740
BmrFI	CCNGG	3 cut(s)	194, 254, 743
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	4 cut(s)	163, 331, 481, 905
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	970, 1002
BpmI	CTGGAG	2 cut(s)	560, 578
BpuMI	CCSGG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	435, 441
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	90, 192, 628
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 465, 721, 735
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	4 cut(s)	119, 139, 585, 595
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	254, 743
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	90, 192, 628
BseGI	GGATG	6 cut(s)	37, 103, 178, 188, 319, 496
BseLI	CCNNNNNNNGG	4 cut(s)	198, 465, 721, 735
BseMII	CTCAG	2 cut(s)	470, 600
BseNI	ACTGG	4 cut(s)	119, 139, 585, 595
BseXI	GCAGC	5 cut(s)	415, 487, 506, 587, 872
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	677, 785, 850
BshNI	GGYRCC	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	702, 891
BsiSI	CCGG	4 cut(s)	194, 263, 345, 786
BslI	CCNNNNNNNGG	4 cut(s)	198, 465, 721, 735
BsmAI	GTCTC	2 cut(s)	209, 571
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	677, 785, 850
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	279, 702, 891
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
BspACI	CCGC	6 cut(s)	311, 360, 395, 497, 815, 992
BspANI	GGCC	3 cut(s)	677, 785, 850
BspCNI	CTCAG	2 cut(s)	471, 601
BspDI	ATCGAT	1 cut(s)	57
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	4 cut(s)	276, 349, 727, 740
BspPI	GGATC	5 cut(s)	209, 384, 443, 543, 849
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	738
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	119, 139, 585, 595
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	90, 192, 628
BssMI	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
BssNI	GRCGYC	2 cut(s)	435, 441
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	254, 743
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	2 cut(s)	435, 441
BstDEI	CTNAG	4 cut(s)	479, 609, 791, 845
BstF5I	GGATG	6 cut(s)	37, 103, 178, 188, 319, 496
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	8 cut(s)	204, 213, 392, 451, 506, 538, 829, 844
BstMAI	GTCTC	2 cut(s)	209, 571
BstMBI	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	2 cut(s)	254, 743
BstSCI	CCNGG	3 cut(s)	192, 252, 741
BstV1I	GCAGC	5 cut(s)	415, 487, 506, 587, 872
BstX2I	RGATCY	3 cut(s)	535, 826, 841
BstYI	RGATCY	3 cut(s)	535, 826, 841
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	677, 785, 850
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	6 cut(s)	37, 103, 178, 188, 319, 496
BtsIMutI	CAGTG	2 cut(s)	602, 800
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	4 cut(s)	434, 443, 449, 912
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	317, 556
CviAII	CATG	3 cut(s)	659, 665, 751
CviJI	RGCY	7 cut(s)	81, 277, 478, 677, 785, 850, 981
CviKI_1	RGCY	7 cut(s)	81, 277, 478, 677, 785, 850, 981
CviQI	GTAC	2 cut(s)	317, 556
DdeI	CTNAG	4 cut(s)	479, 609, 791, 845
DpnI	GATC	8 cut(s)	203, 212, 391, 450, 505, 537, 828, 843
DpnII	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	2 cut(s)	675, 783
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	2 cut(s)	326, 349
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	252, 741
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	662, 668, 754
FatI	CATG	3 cut(s)	658, 664, 750
FauI	CCCGC	2 cut(s)	402, 999
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	429, 476, 495, 601, 816, 861
FokI	GGATG	6 cut(s)	44, 110, 175, 185, 326, 503
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	6 cut(s)	429, 476, 495, 601, 816, 861
FspBI	CTAG	1 cut(s)	830
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	6 cut(s)	429, 476, 495, 601, 816, 861
GsuI	CTGGAG	2 cut(s)	560, 578
HaeIII	GGCC	3 cut(s)	677, 785, 850
HapII	CCGG	4 cut(s)	194, 263, 345, 786
HgaI	GACGC	4 cut(s)	434, 443, 449, 912
HhaI	GCGC	1 cut(s)	627
Hin1I	GRCGYC	2 cut(s)	435, 441
Hin1II	CATG	3 cut(s)	662, 668, 754
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	2 cut(s)	244, 325
HindII	GTYRAC	2 cut(s)	244, 325
HinfI	GANTC	6 cut(s)	185, 266, 326, 365, 613, 689
HpaII	CCGG	4 cut(s)	194, 263, 345, 786
HphI	GGTGA	3 cut(s)	138, 144, 511
Hpy166II	GTNNAC	2 cut(s)	244, 325
Hpy188I	TCNGA	5 cut(s)	50, 184, 225, 370, 780
Hpy188III	TCNNGA	5 cut(s)	29, 214, 263, 539, 830
Hpy8I	GTNNAC	2 cut(s)	244, 325
Hpy99I	CGWCG	6 cut(s)	80, 239, 326, 443, 449, 928
HpyAV	CCTTC	5 cut(s)	5, 342, 367, 465, 557
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	4 cut(s)	494, 573, 637, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	4 cut(s)	479, 609, 791, 845
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	2 cut(s)	435, 441
Hsp92II	CATG	3 cut(s)	662, 668, 754
HspAI	GCGC	1 cut(s)	625
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	4 cut(s)	181, 274, 597, 894
Lsp1109I	GCAGC	5 cut(s)	415, 487, 506, 587, 872
LweI	GCATC	4 cut(s)	163, 331, 481, 905
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	8 cut(s)	203, 212, 391, 450, 505, 537, 828, 843
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
MboII	GAAGA	1 cut(s)	559
MflI	RGATCY	3 cut(s)	535, 826, 841
MhlI	GDGCHC	3 cut(s)	279, 702, 891
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	2 cut(s)	5, 774
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	4 cut(s)	179, 320, 359, 698
MmeI	TCCRAC	5 cut(s)	84, 90, 207, 375, 687
Mox20I	TGGCCA	1 cut(s)	677
MroI	TCCGGA	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	1012
MslI	CAYNNNNRTG	2 cut(s)	224, 663
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	2 cut(s)	478, 497
MspI	CCGG	4 cut(s)	194, 263, 345, 786
MspR9I	CCNGG	3 cut(s)	194, 254, 743
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	254, 743
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
NlaIII	CATG	3 cut(s)	662, 668, 754
NlaIV	GGNNCC	4 cut(s)	276, 349, 727, 740
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 210, 360, 441
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	266, 613
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	6 cut(s)	430, 477, 496, 602, 817, 862
PleI	GAGTC	4 cut(s)	179, 320, 359, 697
PpsI	GAGTC	4 cut(s)	179, 320, 359, 697
Psp6I	CCWGG	2 cut(s)	252, 741
PspGI	CCWGG	2 cut(s)	252, 741
PspN4I	GGNNCC	4 cut(s)	276, 349, 727, 740
PsuI	RGATCY	3 cut(s)	535, 826, 841
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	2 cut(s)	318, 557
RsaNI	GTAC	2 cut(s)	317, 556
RseI	CAYNNNNRTG	2 cut(s)	224, 663
SalI	GTCGAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	1012
SatI	GCNGC	6 cut(s)	429, 476, 495, 601, 816, 861
Sau3AI	GATC	8 cut(s)	201, 210, 389, 448, 503, 535, 826, 841
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	4 cut(s)	179, 320, 359, 698
ScrFI	CCNGG	3 cut(s)	194, 254, 743
SduI	GDGCHC	3 cut(s)	279, 702, 891
SetI	ASST	5 cut(s)	92, 258, 480, 813, 983
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	4 cut(s)	163, 331, 481, 905
SmiMI	CAYNNNNRTG	2 cut(s)	224, 663
Sse9I	AATT	2 cut(s)	5, 774
SsiI	CCGC	6 cut(s)	311, 360, 395, 497, 815, 992
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	192, 252, 741
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	7 cut(s)	57, 75, 213, 324, 384, 926, 949
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	5, 774
TatI	WGTACW	2 cut(s)	316, 555
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	2 cut(s)	266, 613
Tru1I	TTAA	1 cut(s)	1012
Tru9I	TTAA	1 cut(s)	1012
TscAI	CASTG	2 cut(s)	602, 807
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	5 cut(s)	428, 475, 494, 600, 860
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	129, 242, 560, 656, 953
TspRI	CASTG	2 cut(s)	602, 807
Tth111I	GACNNNGTC	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	830
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.