Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

14180082 .. 14182049

Gene Structure 1968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCGCTTGGCTTCAAACCCCGTCGGACTCCATAGATTCCGGCCATGTTTCCGAACTGCTCAACTTCCCCAACAACTCAGAGCCTTCATTCCCTCCCGAACCAACGACCACCGCAGATTTCAGACCGTTGCTTGCCAGAAAACCCCAAATCCCAGTGAGCCTTCCACCTCGGAAAAGTCGCCGCCTGTTGAGCCAGTTTCTGGTAATGAAGTGAGTAGCACGGTTATGAGTAGTTCCTCGACAGACCCTGGCATTCCGGAATTTCCAAACAAAAATACCAACAGGCAAGTAGCAGTGGTTTCTACTCTTGCGGCATTAGCACTTTTCTTATCAGGACGGCTCGATTTTGGTGTTTCTTTAAAGGACCTAACTGTTGCTGCATTACCTTACGAAGAGGCTCTCTCGAATGGCAAGCCTACTGTTGTTGAGTTCTATGCTGATTGGTGTGAAGTATGCAGGGAATTAGCTCCAGATGTCTACAAAGTTGAGCAGCAGTATAAGGGTCGTGTAAATTTTGTTATGCTCAATGTTGATAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTAGATAAAGAGGGAAATGAAGAGGGCAATGTTACTGGCAGGCTCCCAGAAAAGTACTTGCGTGAGAATGTGGATGCCCTCTCCCGCGGAGAAGCTTCCATACCTCATGCCCGTGTAGTGGGGCAATATTCCAGTGCTGAAAACAGAAAGGTTCACCAAGTTGTGGATCCAAGAAGTCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

261

Amino Acids

28.98

Weight (kDa)

5.92

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	130 - 225	7.8e-20	Thioredoxin
Thioredoxin_7	PF13899	131 - 202	6.6e-10	Thioredoxin-like
Thioredoxin_2	PF13098	136 - 220	2.1e-09	Thioredoxin-like domain
Thioredoxin_8	PF13905	138 - 199	2.2e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	203, 763
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	687
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	5 cut(s)	115, 185, 314, 685, 687
AclWI	GGATC	2 cut(s)	761, 774
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	263, 514
AdeI	CACNNNGTG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	203, 718, 763
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	470, 559, 695
AluI	AGCT	3 cut(s)	470, 559, 695
AlwI	GGATC	2 cut(s)	761, 774
AlwNI	CAGNNNCTG	2 cut(s)	203, 251
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	380, 493
ApoI	RAATTY	2 cut(s)	263, 514
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	766
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbvI	GCAGC	2 cut(s)	367, 505
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	252
BfaI	CTAG	1 cut(s)	602
BisI	GCNGC	4 cut(s)	185, 315, 381, 494
BlsI	GCNGC	4 cut(s)	186, 316, 382, 495
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	644, 768
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	171, 250, 685
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 718, 763
Bse1I	ACTGG	4 cut(s)	156, 197, 640, 732
Bse3DI	GCAATG	1 cut(s)	634
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	171, 250, 685
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	3 cut(s)	203, 718, 763
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	4 cut(s)	156, 197, 640, 732
BseXI	GCAGC	2 cut(s)	367, 505
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	43, 260
BslI	CCNNNNNNNGG	3 cut(s)	203, 718, 763
BsmI	GAATGC	2 cut(s)	255, 596
BsnI	GGCC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	766
BspACI	CCGC	5 cut(s)	115, 185, 314, 685, 687
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	644, 768
BspPI	GGATC	2 cut(s)	761, 774
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	4 cut(s)	156, 197, 640, 732
BssECI	CCNNGG	3 cut(s)	171, 250, 685
BssMI	GATC	1 cut(s)	766
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	130, 226, 376, 424
Bst6I	CTCTTC	2 cut(s)	390, 615
BstC8I	GCNNGC	4 cut(s)	7, 136, 416, 641
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	1 cut(s)	687
BstKTI	GATC	1 cut(s)	769
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 193, 320
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	2 cut(s)	367, 505
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	163, 303, 739
Cac8I	GCNNGC	4 cut(s)	7, 136, 416, 641
CaiI	CAGNNNCTG	2 cut(s)	203, 251
Cfr13I	GGNCC	1 cut(s)	367
Cfr42I	CCGCGG	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	3 cut(s)	48, 707, 779
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	390, 615
EarI	CTCTTC	2 cut(s)	390, 615
Eco47I	GGWCC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	51, 710, 782
FatI	CATG	3 cut(s)	47, 706, 778
FauI	CCCGC	1 cut(s)	692
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	185, 315, 381, 494
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	4 cut(s)	185, 315, 381, 494
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	4 cut(s)	185, 315, 381, 494
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	43, 260
Hin1II	CATG	3 cut(s)	51, 710, 782
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	2 cut(s)	30, 39
HpaII	CCGG	2 cut(s)	43, 260
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	2 cut(s)	481, 754
Hpy188I	TCNGA	5 cut(s)	29, 56, 83, 126, 175
Hpy188III	TCNNGA	5 cut(s)	99, 260, 336, 406, 473
Hpy8I	GTNNAC	2 cut(s)	481, 754
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	97, 174
HpyCH4III	ACNGT	4 cut(s)	130, 226, 376, 424
HpyCH4V	TGCA	3 cut(s)	383, 459, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 193, 320
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	51, 710, 782
Kpn2I	TCCGGA	1 cut(s)	259
KspI	CCGCGG	1 cut(s)	688
Kzo9I	GATC	1 cut(s)	766
LmnI	GCTCC	3 cut(s)	475, 556, 648
Lsp1109I	GCAGC	2 cut(s)	367, 505
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MboII	GAAGA	2 cut(s)	407, 632
MflI	RGATCY	1 cut(s)	766
MluCI	AATT	3 cut(s)	263, 464, 514
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	9 cut(s)	106, 181, 250, 391, 571, 604, 616, 689, 714
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	227, 711
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	2 cut(s)	43, 260
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	2 cut(s)	255, 596
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	11, 193, 320
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	3 cut(s)	51, 710, 782
NlaIV	GGNNCC	2 cut(s)	644, 768
PctI	GAATGC	2 cut(s)	255, 596
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	2 cut(s)	203, 763
PkrI	GCNGC	4 cut(s)	186, 316, 382, 495
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	644, 768
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	203, 251
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	2 cut(s)	227, 711
SacII	CCGCGG	1 cut(s)	688
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	4 cut(s)	185, 315, 381, 494
Sau3AI	GATC	1 cut(s)	766
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	8 cut(s)	173, 372, 391, 472, 561, 697, 706, 753
SfaNI	GCATC	1 cut(s)	664
Sfr303I	CCGCGG	1 cut(s)	688
SgrBI	CCGCGG	1 cut(s)	688
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	227, 711
Sse9I	AATT	3 cut(s)	263, 464, 514
SsiI	CCGC	5 cut(s)	115, 185, 314, 685, 687
SspI	AATATT	1 cut(s)	728
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	130, 226, 376, 424
TaqI	TCGA	3 cut(s)	242, 345, 407
TasI	AATT	3 cut(s)	263, 464, 514
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	2 cut(s)	187, 317
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	3 cut(s)	163, 303, 739
TseI	GCWGC	2 cut(s)	380, 493
TspDTI	ATGAA	3 cut(s)	79, 225, 633
TspRI	CASTG	3 cut(s)	163, 303, 739
Van91I	CCANNNNNTGG	2 cut(s)	203, 763
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	263, 514
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	1 cut(s)	602
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.