Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Forward (+)

46512963 .. 46515152

Gene Structure 2190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACGATCAAAATCAAGGGCCATGATGCAGTGACTGTTTCAAATTTCAAGGTCGCCAACGGCTGTTTAAATACGTGGGCAAGCTGGGAGGTAGACCTTGAATTTTTGGACAGCGGCGTTGACGTGATCGGAGAGATCGATTGGGATTTTGTATTCGATGATGGGAATGGGTTAGATTTGTTGCAAGAGTTGGAGAACCCGGCCATCGTAGCGGCAACTAGGGCTTCGCCTTCTTCACCGTCGTCATCAACGGTGGAGGATGCTCTGGCCAACCCGGAGACGAGATTGATTGACACGTTAATCGGCGAGGTTGAGGAGATGCTGATGAAAGATGATGACGGAAGCAAGGTGGCTTTGGAGGAGCCACCTAAGGAGTATTGTGAGATTTTTTTTGGCAGATGTACTCGTGGATTCGGGGTCGACGGAATCTCCGGCCGACGTGGCTTCGAATTCGAACGGCTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

156

Amino Acids

17.07

Weight (kDa)

4.24

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 420
AciI	CCGC	2 cut(s)	114, 212
AcoI	YGGCCR	3 cut(s)	201, 267, 433
AcsI	RAATTY	3 cut(s)	43, 101, 449
AfaI	GTAC	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	42, 49, 101
AjiI	CACGTC	2 cut(s)	124, 440
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	19, 201, 267, 433
ApeKI	GCWGC	1 cut(s)	460
ApoI	RAATTY	3 cut(s)	43, 101, 449
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	200, 275
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	2 cut(s)	447, 453
AxyI	CCTNAGG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	269
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	2 cut(s)	155, 212
BceAI	ACGGC	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	200, 275
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	441
BisI	GCNGC	3 cut(s)	115, 213, 461
BlsI	GCNGC	3 cut(s)	116, 214, 462
Bme1390I	CCNGG	2 cut(s)	200, 275
BmgBI	CACGTC	2 cut(s)	124, 440
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	200, 275
BmsI	GCATC	3 cut(s)	16, 250, 309
Bpu14I	TTCGAA	2 cut(s)	447, 453
BpuMI	CCSGG	2 cut(s)	200, 275
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bse21I	CCTNAGG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	329, 374
BseX3I	CGGCCG	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	4 cut(s)	21, 203, 269, 435
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	200, 275, 432
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	21, 203, 269, 435
Bsp119I	TTCGAA	2 cut(s)	447, 453
Bsp143I	GATC	3 cut(s)	6, 126, 135
BspACI	CCGC	2 cut(s)	114, 212
BspANI	GGCC	4 cut(s)	21, 203, 269, 435
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	363
BspT104I	TTCGAA	2 cut(s)	447, 453
BssMI	GATC	3 cut(s)	6, 126, 135
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	37, 240, 253
BstBAI	YACGTR	1 cut(s)	75
BstBI	TTCGAA	2 cut(s)	447, 453
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	3 cut(s)	9, 129, 138
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	3 cut(s)	6, 126, 135
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 221, 441
BstSCI	CCNGG	2 cut(s)	198, 273
BstV1I	GCAGC	1 cut(s)	447
BstZI	CGGCCG	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	21, 203, 269, 435
BsuTUI	ATCGAT	1 cut(s)	138
BtrI	CACGTC	2 cut(s)	124, 440
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	8, 128, 137
DpnII	GATC	3 cut(s)	6, 126, 135
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	3 cut(s)	201, 267, 433
EagI	CGGCCG	1 cut(s)	433
EclXI	CGGCCG	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	26
FaiI	YATR	1 cut(s)	24
FatI	CATG	1 cut(s)	22
FblI	GTMKAC	2 cut(s)	93, 420
Fnu4HI	GCNGC	3 cut(s)	115, 213, 461
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	115, 213, 461
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	3 cut(s)	115, 213, 461
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	21, 203, 269, 435
HapII	CCGG	3 cut(s)	200, 275, 432
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	121, 421
HindII	GTYRAC	2 cut(s)	121, 421
HinfI	GANTC	2 cut(s)	411, 426
HpaII	CCGG	3 cut(s)	200, 275, 432
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	3 cut(s)	94, 121, 421
Hpy188I	TCNGA	1 cut(s)	131
Hpy8I	GTNNAC	3 cut(s)	94, 121, 421
Hpy99I	CGWCG	3 cut(s)	244, 425, 441
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	3 cut(s)	37, 240, 253
HpyCH4IV	ACGT	4 cut(s)	74, 123, 296, 439
HpyCH4V	TGCA	2 cut(s)	29, 184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 221, 441
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	4 cut(s)	74, 123, 296, 439
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	6, 126, 135
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	5 cut(s)	70, 213, 251, 288, 445
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	3 cut(s)	16, 250, 309
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	4 cut(s)	74, 123, 296, 439
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	8, 128, 137
MboI	GATC	3 cut(s)	6, 126, 135
MboII	GAAGA	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	43, 101, 449
MluNI	TGGCCA	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	82, 250, 301, 307, 352
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	68, 299
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	3 cut(s)	200, 275, 432
MspR9I	CCNGG	2 cut(s)	200, 275
MwoI	GCNNNNNNNGC	3 cut(s)	209, 221, 441
NciI	CCSGG	2 cut(s)	200, 275
NdeII	GATC	3 cut(s)	6, 126, 135
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	31
NspV	TTCGAA	2 cut(s)	447, 453
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	411, 426
PkrI	GCNGC	3 cut(s)	116, 214, 462
Ppu21I	YACGTR	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	68, 299
SatI	GCNGC	3 cut(s)	115, 213, 461
Sau3AI	GATC	3 cut(s)	6, 126, 135
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	200, 275
SfaNI	GCATC	3 cut(s)	16, 250, 309
SfuI	TTCGAA	2 cut(s)	447, 453
Sse9I	AATT	3 cut(s)	43, 101, 449
SsiI	CCGC	2 cut(s)	114, 212
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	198, 273
TaaI	ACNGT	3 cut(s)	37, 240, 253
TaiI	ACGT	4 cut(s)	77, 126, 299, 442
TaqI	TCGA	5 cut(s)	138, 156, 420, 447, 453
TasI	AATT	3 cut(s)	43, 101, 449
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	2 cut(s)	117, 215
TfiI	GAWTC	2 cut(s)	411, 426
Tru1I	TTAA	2 cut(s)	68, 299
Tru9I	TTAA	2 cut(s)	68, 299
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	2 cut(s)	354, 438
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	3 cut(s)	43, 101, 449
XmiI	GTMKAC	2 cut(s)	93, 420
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.