Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002842.1

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3873

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggatgatgaacaaggctacaagcctccggcagattttgaagaaaatgctaaagacccagtggtcaatttcaacgtgaacgattttactgagctttggttcattcggtcttggtcttggtcttcgcctccctccctctccttgatcacaaatcttcaggtcttggtcttggtattcgcctccctccctctccttgatcacaaatcttcaggtcttggtcttggtattcgcctccaattccggcgaccaccagccccgccgtcgtctctcagatcggacccagccttcaacccgaactctgaaaaagattcgatctctctatctctcagcagcgttgacgtgatcgaagagatagattgggatttcgtattcgacgatgcgaatgggttagaattgttgcaagagttggagaacccggccatcatggcggcaactagggcttcgccttcttcattttcgtcatcaacggtggaggatgctctggccaacccgaagacgggatcgattgacatgtggattggcgaggttgaggggatgctgatgaaagacgatgacggaagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

188

Amino Acids

20.69

Weight (kDa)

4.14

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	257, 428
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	2 cut(s)	417, 483
AcuI	CTGAAG	2 cut(s)	140, 192
AfiI	CCNNNNNNNGG	2 cut(s)	496, 497
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	3 cut(s)	41, 73, 289
AjiI	CACGTC	1 cut(s)	340
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	2 cut(s)	417, 483
ApeKI	GCWGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	114, 500
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	244
BclI	TGATCA	2 cut(s)	144, 196
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	331, 429
BlsI	GCNGC	2 cut(s)	332, 430
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	367, 466, 525
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	114, 500
BpuMI	CCSGG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 497
Bse1I	ACTGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	503
BseGI	GGATG	3 cut(s)	10, 481, 540
BseLI	CCNNNNNNNGG	2 cut(s)	496, 497
BseMII	CTCAG	3 cut(s)	81, 283, 340
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	419, 485
BshVI	ATCGAT	1 cut(s)	503
BsiSI	CCGG	3 cut(s)	29, 241, 416
BslI	CCNNNNNNNGG	2 cut(s)	496, 497
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	419, 485
Bsp143I	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
BspACI	CCGC	2 cut(s)	257, 428
BspANI	GGCC	2 cut(s)	419, 485
BspCNI	CTCAG	3 cut(s)	82, 282, 339
BspDI	ATCGAT	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	90, 269, 326
BstF5I	GGATG	3 cut(s)	10, 481, 540
BstKTI	GATC	6 cut(s)	147, 199, 275, 315, 345, 503
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 437
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	2 cut(s)	114, 500
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	419, 485
BsuTUI	ATCGAT	1 cut(s)	503
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	10, 481, 540
BtsIMutI	CAGTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	503
CviAII	CATG	2 cut(s)	424, 511
CviJI	RGCY	8 cut(s)	18, 25, 94, 254, 284, 419, 440, 485
CviKI_1	RGCY	8 cut(s)	18, 25, 94, 254, 284, 419, 440, 485
DdeI	CTNAG	3 cut(s)	90, 269, 326
DpnI	GATC	6 cut(s)	146, 198, 274, 314, 344, 502
DpnII	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	417, 483
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	140, 192
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	427, 514
FaiI	YATR	2 cut(s)	425, 512
FatI	CATG	2 cut(s)	423, 510
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	2 cut(s)	144, 196
Fnu4HI	GCNGC	2 cut(s)	331, 429
FokI	GGATG	3 cut(s)	17, 488, 547
Fsp4HI	GCNGC	2 cut(s)	331, 429
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	331, 429
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	419, 485
HapII	CCGG	3 cut(s)	29, 241, 416
Hin1II	CATG	2 cut(s)	427, 514
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	3 cut(s)	29, 241, 416
Hpy166II	GTNNAC	2 cut(s)	79, 337
Hpy188I	TCNGA	3 cut(s)	272, 277, 301
Hpy8I	GTNNAC	2 cut(s)	79, 337
Hpy99I	CGWCG	2 cut(s)	265, 377
HpyAV	CCTTC	2 cut(s)	295, 456
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	75, 339
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 437
HpyF3I	CTNAG	3 cut(s)	90, 269, 326
HpySE526I	ACGT	2 cut(s)	75, 339
Hsp92II	CATG	2 cut(s)	427, 514
Ksp22I	TGATCA	2 cut(s)	144, 196
Kzo9I	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
LpnPI	CCDG	9 cut(s)	42, 72, 143, 195, 254, 264, 294, 429, 467
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	3 cut(s)	367, 466, 525
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	75, 339
MalI	GATC	6 cut(s)	146, 198, 274, 314, 344, 502
MboI	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
MboII	GAAGA	7 cut(s)	53, 114, 146, 198, 359, 441, 505
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	3 cut(s)	67, 236, 392
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	387
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	3 cut(s)	29, 241, 416
MspR9I	CCNGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	425, 437
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
NlaIII	CATG	2 cut(s)	427, 514
NlaIV	GGNNCC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	514
PciI	ACATGT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	332, 430
PscI	ACATGT	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
SatI	GCNGC	2 cut(s)	331, 429
Sau3AI	GATC	6 cut(s)	144, 196, 272, 312, 342, 500
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	6 cut(s)	78, 96, 162, 214, 342, 528
SfaNI	GCATC	3 cut(s)	367, 466, 525
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	67, 236, 392
SsiI	CCGC	2 cut(s)	257, 428
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	78, 342
TaqI	TCGA	4 cut(s)	311, 345, 372, 503
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	67, 236, 392
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	308
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	4 cut(s)	24, 91, 441, 557
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.