Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002399.1

Orthogroup ID

OG0007279

Physical Location & Seq

Genomic Coordinates Reverse (-)

34750 .. 35103

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002399.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ctgctgtctctcataccagccttcaccaacccgaactctgacaaagatttgatctctctatctctcaacagcgttgacgtgatcggagagatcgattgggatttcgtattcgactatgcgaatgggttagaattattgcaagagttggagaatccggccgtcacggcggcaactagggcttcgccttcttcattgtcgtcatcaacggtggaggatgctctggccaacccggagacgggatcgattgacacgtggatcggcgaggttgaggggatgctgatgaaagacgatgacagaagcaaggtggctttggaggagccacctaaggagtactatgagaaattttttggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

4.05

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42990
fragaria_vesca	FvH4_5g26440
malus_domestica	MD06G1002100.v1.1
prunus_persica	Prupe.5G003000_v2.0.a1
pyrus_communis	pycom06g00220
rosa_chinensis	RchiOBHm_Chr7g0217321
rosa_laevigata	RLG00000002495 RLG00000003279 RLG00000008982 RLG00000010053
rosa_multiflora	Rmu_co8478867.1_g000001 Rmu_sc0002399.1_g000009 Rmu_sc0002842.1_g000001 Rmu_sc0007784.1_g000005 Rmu_sc0007843.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242450
rosa_rugosa	Rorug02G0159300 Rorug07G0168000
rosa_samantha	Rh7AG307200 Rh7BG298100 Rh7CG185700 Rh7CG326200 Rh7DG306800
rosa_wichuraiana	Rw7G026080 Rw7G029750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	247, 263
AcoI	YGGCCR	2 cut(s)	156, 222
AcsI	RAATTY	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	235, 236
AflIII	ACRYGT	1 cut(s)	249
AjiI	CACGTC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	12, 227
AlwI	GGATC	2 cut(s)	247, 263
AoxI	GGCC	2 cut(s)	156, 222
ApoI	RAATTY	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	252
BceAI	ACGGC	2 cut(s)	143, 180
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	12, 227
BfaI	CTAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	205, 264
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	93, 242
BsaAI	YACGTR	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 236
Bse21I	CCTNAGG	1 cut(s)	324
BseCI	ATCGAT	2 cut(s)	93, 242
BseGI	GGATG	2 cut(s)	220, 279
BseLI	CCNNNNNNNGG	2 cut(s)	235, 236
BseRI	GAGGAG	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	158, 224
BshVI	ATCGAT	2 cut(s)	93, 242
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	155, 230
BslI	CCNNNNNNNGG	2 cut(s)	235, 236
BsmAI	GTCTC	2 cut(s)	12, 227
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	158, 224
Bsp143I	GATC	5 cut(s)	51, 81, 90, 239, 255
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	158, 224
BspDI	ATCGAT	2 cut(s)	93, 242
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	247, 263
BssMI	GATC	5 cut(s)	51, 81, 90, 239, 255
Bst4CI	ACNGT	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	220, 279
BstKTI	GATC	5 cut(s)	54, 84, 93, 242, 258
BstMAI	GTCTC	2 cut(s)	12, 227
BstMBI	GATC	5 cut(s)	51, 81, 90, 239, 255
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 176
BstSCI	CCNGG	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	156
Bsu15I	ATCGAT	2 cut(s)	93, 242
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	158, 224
BsuTUI	ATCGAT	2 cut(s)	93, 242
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	220, 279
ClaI	ATCGAT	2 cut(s)	93, 242
Csp6I	GTAC	1 cut(s)	331
CviJI	RGCY	7 cut(s)	20, 158, 179, 224, 308, 319, 351
CviKI_1	RGCY	7 cut(s)	20, 158, 179, 224, 308, 319, 351
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	5 cut(s)	53, 83, 92, 241, 257
DpnII	GATC	5 cut(s)	51, 81, 90, 239, 255
EaeI	YGGCCR	2 cut(s)	156, 222
EagI	CGGCCG	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	227
FaiI	YATR	3 cut(s)	14, 117, 336
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	2 cut(s)	227, 286
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	158, 224
HapII	CCGG	2 cut(s)	155, 230
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	155, 230
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	40, 86
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	31, 195
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	78, 251
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 176
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	78, 251
Kzo9I	GATC	5 cut(s)	51, 81, 90, 239, 255
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	4 cut(s)	30, 168, 206, 243
LweI	GCATC	2 cut(s)	205, 264
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	78, 251
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	5 cut(s)	53, 83, 92, 241, 257
MboI	GATC	5 cut(s)	51, 81, 90, 239, 255
MboII	GAAGA	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	131, 341
MluNI	TGGCCA	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	205, 256, 262, 307
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	2 cut(s)	155, 230
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	164, 176
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	5 cut(s)	51, 81, 90, 239, 255
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 248
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	318
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	5 cut(s)	51, 81, 90, 239, 255
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	5 cut(s)	81, 254, 267, 306, 325
SfaNI	GCATC	2 cut(s)	205, 264
Sse9I	AATT	2 cut(s)	131, 341
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	81, 254
TaqI	TCGA	3 cut(s)	93, 111, 242
TasI	AATT	2 cut(s)	131, 341
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	180, 296
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.