Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

16359029 .. 16360023

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAGAGTCTATTGATTTGAATCGATTAGAGTCCGAGTCTGATAACAACACCGACGACGTTACTCCTATTTTTGCAATTGATGACTCTGCAAAAGGGTATTTTTCTCTTAATAGGAGGAATGATGTCCAATGCCAACACCGTTGGTTAAAGGTTCTTGATCCAAGCCTCCAAAAAGGAGCTTGGAAAAAAGAGGAAGATAAACTCTTAAGTGAGTTGGTTAAAAATTATATATGTAATTATGTATATATATTCCTTTCGATACTATTTAACTATAATAAAAAATCAAATATTAATAGTTATTTTTTTGGTACATCAAAAAGGATAAAATTTATTATATTTCTATTTTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

118

Amino Acids

14.03

Weight (kDa)

8.49

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	37 - 70	1.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	313
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	25
BspPI	GGATC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	208
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	312
CviJI	RGCY	2 cut(s)	168, 182
CviKI_1	RGCY	2 cut(s)	168, 182
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
HinfI	GANTC	5 cut(s)	8, 22, 32, 38, 86
Hpy188I	TCNGA	2 cut(s)	37, 43
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	77, 92
HpySE526I	ACGT	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	179
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	4 cut(s)	78, 226, 238, 329
MlyI	GAGTC	4 cut(s)	17, 41, 47, 80
MnlI	CCTC	3 cut(s)	111, 179, 187
MseI	TTAA	6 cut(s)	111, 149, 209, 222, 270, 294
MspCI	CTTAAG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	78
NdeII	GATC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	7
PleI	GAGTC	4 cut(s)	16, 40, 46, 80
PpsI	GAGTC	4 cut(s)	16, 40, 46, 80
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	351
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	6 cut(s)	111, 149, 209, 222, 270, 294
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	4 cut(s)	17, 41, 47, 80
SetI	ASST	3 cut(s)	63, 156, 184
SgeI	CNNG	4 cut(s)	49, 170, 177, 195
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	4 cut(s)	78, 226, 238, 329
SspI	AATATT	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	25, 260
TasI	AATT	4 cut(s)	78, 226, 238, 329
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	6 cut(s)	111, 149, 209, 222, 270, 294
Tru9I	TTAA	6 cut(s)	111, 149, 209, 222, 270, 294
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.