Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005122.1

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

32624 .. 40098

Gene Structure 7475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005122.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atggtgcaagtcaaagaatgtgatcctaacatggaaaagggggttttgctttctttgagtcctccggtatcggatagcagtggagataacacagctctcaagccagcctctgctcaactgttcgagaatgacaggccctacgagatgatcagcaaagggaggctggacagaggaagagctgaatgtgttcgtggcagaacagatgttcagtgccttcatcgctggcagaaagtcctctcacctgatcttgaagatgatctaataattgagttggtcgcaaagcaggggaataagaaatggtctgaaatagcaaagtccttgccaggccgtataggcaagcaatgtcgagagaggtggcacaaccatttaaatccagatataaaaagaactgcatggacgaatgaagaagaaaagattctcattgagtcgcataaagcctacgggaacaaatgggctgaaatagcaaagcttctgcctggaagggagattcagataaaatctttggacaaaggaaatcgcggttggcttacaaaaggagttggtgcagataatatgatcaaatcaccacctagtaacctttattacgatagagctgcagctgcatgtggtctaaatattgaacaacgggaagaaatttatcataattatggcaggttgagagactcgcattatttatctgctaaacaatcaatcaaagcttgcagtactccttcctgtgatctttggggttttcccttttttcatggaaagaatcataaacccaatcaccctatgagtttgttgaataatggctcagattcttttgactacaatagaggagctggaaattttctcaagaaaccagatcgtcctattacagttgagagattacatgaatcttgtacagtgtcacaagacttgggtcacctgacctctagatctggtccggcccatcaccttcaccaccagggtgtgcttcacagtcgattccatgctcagatttgggagctcgagacgagggtctggaggaggaggcggccgcttggcttggaggagagtttgagattgtggagattcccaacatcacagatcatcgtcacgtattctcttgatcaggatgggatattgaatgttaatgttaccgctgagggaacatctgagcactctgatatcaaacacatgctactcgtcaagagtagcaagagaggattggacagcaatgtagttagtatgatggccgacaagttagcaagggaggagctcgtaaagcttgctgatggaagcaatgttgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

425

Amino Acids

48.21

Weight (kDa)

8.86

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	642
AccII	CGCG	1 cut(s)	519
AciI	CCGC	4 cut(s)	519, 1015, 1019, 1122
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	1016, 1215
AcsI	RAATTY	2 cut(s)	633, 826
AfaI	GTAC	2 cut(s)	706, 883
AgsI	TTSAA	5 cut(s)	251, 620, 784, 1108, 1271
AjnI	CCWGG	3 cut(s)	322, 475, 945
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AleI	CACNNNNGTG	1 cut(s)	948
Alw21I	GWGCWC	3 cut(s)	990, 1143, 1242
Alw26I	GTCTC	2 cut(s)	654, 986
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	989
AoxI	GGCC	5 cut(s)	134, 325, 927, 1016, 1215
ApeKI	GCWGC	3 cut(s)	593, 596, 599
ApoI	RAATTY	2 cut(s)	633, 826
Asp700I	GAANNNNTTC	2 cut(s)	186, 414
AspS9I	GGNCC	3 cut(s)	135, 923, 928
AsuHPI	GGTGA	6 cut(s)	231, 555, 758, 896, 926, 932
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	923
BanII	GRGCYC	2 cut(s)	990, 1242
Bbv12I	GWGCWC	3 cut(s)	990, 1143, 1242
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	3 cut(s)	580, 586, 608
BccI	CCATC	4 cut(s)	939, 1091, 1207, 1250
BceAI	ACGGC	1 cut(s)	312
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	3 cut(s)	324, 477, 947
BclI	TGATCA	3 cut(s)	147, 555, 1090
BcoDI	GTCTC	2 cut(s)	654, 986
BfaI	CTAG	2 cut(s)	570, 915
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	917
BisI	GCNGC	5 cut(s)	594, 597, 600, 1016, 1019
BlsI	GCNGC	5 cut(s)	595, 598, 601, 1017, 1020
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	3 cut(s)	324, 477, 947
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	3 cut(s)	135, 923, 928
BmrFI	CCNGG	3 cut(s)	324, 477, 947
BoxI	GACNNNNGTC	2 cut(s)	900, 998
BpmI	CTGGAG	1 cut(s)	1024
Bpu10I	CCTNAGC	1 cut(s)	1125
BpuEI	CTTGAG	2 cut(s)	83, 818
BsaAI	YACGTR	1 cut(s)	1080
BsaJI	CCNNGG	1 cut(s)	946
BsaWI	WCCGGW	1 cut(s)	64
Bse3DI	GCAATG	3 cut(s)	347, 1204, 1270
BseBI	CCWGG	3 cut(s)	324, 477, 947
BseDI	CCNNGG	1 cut(s)	946
BseGI	GGATG	1 cut(s)	1102
BseMI	GCAATG	3 cut(s)	347, 1204, 1270
BseMII	CTCAG	4 cut(s)	807, 989, 1116, 1128
BseRI	GAGGAG	5 cut(s)	831, 1021, 1024, 1046, 1250
BseX3I	CGGCCG	1 cut(s)	1016
BseXI	GCAGC	3 cut(s)	580, 586, 608
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	1019
BshFI	GGCC	5 cut(s)	136, 327, 929, 1018, 1217
BsiEI	CGRYCG	1 cut(s)	1019
BsiHKAI	GWGCWC	3 cut(s)	990, 1143, 1242
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	2 cut(s)	65, 926
BsmAI	GTCTC	2 cut(s)	654, 986
BsmBI	CGTCTC	1 cut(s)	986
BsnI	GGCC	5 cut(s)	136, 327, 929, 1018, 1217
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	3 cut(s)	990, 1143, 1242
Bsp1407I	TGTACA	1 cut(s)	881
BspACI	CCGC	4 cut(s)	519, 1015, 1019, 1122
BspANI	GGCC	5 cut(s)	136, 327, 929, 1018, 1217
BspCNI	CTCAG	4 cut(s)	806, 988, 1117, 1129
BspFNI	CGCG	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	169
BsrDI	GCAATG	3 cut(s)	347, 1204, 1270
BsrGI	TGTACA	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	946
Bst2UI	CCWGG	3 cut(s)	324, 477, 947
Bst4CI	ACNGT	4 cut(s)	120, 859, 886, 962
Bst6I	CTCTTC	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	881
BstBAI	YACGTR	1 cut(s)	1080
BstC8I	GCNNGC	5 cut(s)	105, 224, 338, 700, 1251
BstDEI	CTNAG	4 cut(s)	793, 975, 1125, 1137
BstEII	GGTNACC	1 cut(s)	902
BstF5I	GGATG	1 cut(s)	1102
BstFNI	CGCG	1 cut(s)	519
BstMAI	GTCTC	2 cut(s)	654, 986
BstMCI	CGRYCG	1 cut(s)	1019
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 333, 461, 599, 1246
BstNI	CCWGG	3 cut(s)	324, 477, 947
BstNSI	RCATGY	2 cut(s)	606, 1162
BstPAI	GACNNNNGTC	2 cut(s)	900, 998
BstPI	GGTNACC	1 cut(s)	902
BstSCI	CCNGG	3 cut(s)	322, 475, 945
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	580, 586, 608
BstX2I	RGATCY	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	917
BstZI	CGGCCG	1 cut(s)	1016
BsuRI	GGCC	5 cut(s)	136, 327, 929, 1018, 1217
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	1102
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 215, 891
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	5 cut(s)	105, 224, 338, 700, 1251
CaiI	CAGNNNCTG	1 cut(s)	110
CciNI	GCGGCCGC	1 cut(s)	1016
Cfr13I	GGNCC	3 cut(s)	135, 923, 928
Csp6I	GTAC	2 cut(s)	705, 882
CviAII	CATG	7 cut(s)	31, 393, 603, 743, 872, 971, 1159
CviQI	GTAC	2 cut(s)	705, 882
DdeI	CTNAG	4 cut(s)	793, 975, 1125, 1137
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	1016, 1215
EagI	CGGCCG	1 cut(s)	1016
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	2 cut(s)	988, 1240
EclXI	CGGCCG	1 cut(s)	1016
Eco24I	GRGCYC	2 cut(s)	990, 1242
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	1 cut(s)	923
Eco52I	CGGCCG	1 cut(s)	1016
Eco53kI	GAGCTC	2 cut(s)	988, 1240
Eco88I	CYCGRG	1 cut(s)	989
Eco91I	GGTNACC	1 cut(s)	902
EcoICRI	GAGCTC	2 cut(s)	988, 1240
EcoO109I	RGGNCCY	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	902
EcoRII	CCWGG	3 cut(s)	322, 475, 945
EcoRV	GATATC	1 cut(s)	1150
EcoT38I	GRGCYC	2 cut(s)	990, 1242
Esp3I	CGTCTC	1 cut(s)	986
FaeI	CATG	7 cut(s)	34, 396, 606, 746, 875, 974, 1162
FatI	CATG	7 cut(s)	30, 392, 602, 742, 871, 970, 1158
FbaI	TGATCA	3 cut(s)	147, 555, 1090
Fnu4HI	GCNGC	5 cut(s)	594, 597, 600, 1016, 1019
FokI	GGATG	1 cut(s)	1109
FriOI	GRGCYC	2 cut(s)	990, 1242
Fsp4HI	GCNGC	5 cut(s)	594, 597, 600, 1016, 1019
FspBI	CTAG	2 cut(s)	570, 915
GluI	GCNGC	5 cut(s)	594, 597, 600, 1016, 1019
GsuI	CTGGAG	1 cut(s)	1024
HaeIII	GGCC	5 cut(s)	136, 327, 929, 1018, 1217
HapII	CCGG	2 cut(s)	65, 926
Hin1II	CATG	7 cut(s)	34, 396, 606, 746, 875, 974, 1162
HindIII	AAGCTT	3 cut(s)	467, 696, 1247
HpaII	CCGG	2 cut(s)	65, 926
HphI	GGTGA	6 cut(s)	231, 555, 758, 896, 926, 932
Hpy188I	TCNGA	7 cut(s)	73, 304, 492, 796, 978, 1138, 1147
HpyAV	CCTTC	4 cut(s)	224, 474, 720, 947
HpyCH4III	ACNGT	4 cut(s)	120, 859, 886, 962
HpyCH4IV	ACGT	1 cut(s)	1079
HpyCH4V	TGCA	6 cut(s)	7, 392, 545, 596, 602, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 333, 461, 599, 1246
HpyF3I	CTNAG	4 cut(s)	793, 975, 1125, 1137
HpySE526I	ACGT	1 cut(s)	1079
Hsp92II	CATG	7 cut(s)	34, 396, 606, 746, 875, 974, 1162
Ksp22I	TGATCA	3 cut(s)	147, 555, 1090
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	818, 985, 1237
Lsp1109I	GCAGC	3 cut(s)	580, 586, 608
MaeI	CTAG	2 cut(s)	570, 915
MaeII	ACGT	1 cut(s)	1079
MaeIII	GTNAC	5 cut(s)	572, 888, 902, 1075, 1117
MboII	GAAGA	5 cut(s)	186, 263, 416, 419, 641
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	3 cut(s)	990, 1143, 1242
MluCI	AATT	4 cut(s)	264, 633, 643, 826
MlyI	GAGTC	3 cut(s)	67, 434, 656
MroXI	GAANNNNTTC	2 cut(s)	186, 414
MseI	TTAA	3 cut(s)	368, 1113, 1276
MslI	CAYNNNNRTG	2 cut(s)	645, 948
MspA1I	CMGCKG	2 cut(s)	599, 1124
MspI	CCGG	2 cut(s)	65, 926
MspR9I	CCNGG	3 cut(s)	324, 477, 947
MvaI	CCWGG	3 cut(s)	324, 477, 947
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	219, 333, 461, 599, 1246
NlaIII	CATG	7 cut(s)	34, 396, 606, 746, 875, 974, 1162
NmuCI	GTSAC	3 cut(s)	888, 902, 1075
NotI	GCGGCCGC	1 cut(s)	1016
NspI	RCATGY	2 cut(s)	606, 1162
OliI	CACNNNNGTG	1 cut(s)	948
PaeR7I	CTCGAG	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	186, 414
PfeI	GAWTC	7 cut(s)	415, 487, 751, 797, 875, 966, 1053
PkrI	GCNGC	5 cut(s)	595, 598, 601, 1017, 1020
PleI	GAGTC	3 cut(s)	66, 433, 656
PpsI	GAGTC	3 cut(s)	66, 433, 656
Ppu21I	YACGTR	1 cut(s)	1080
PshAI	GACNNNNGTC	2 cut(s)	900, 998
Psp124BI	GAGCTC	2 cut(s)	990, 1242
Psp6I	CCWGG	3 cut(s)	322, 475, 945
PspEI	GGTNACC	1 cut(s)	902
PspGI	CCWGG	3 cut(s)	322, 475, 945
PspPI	GGNCC	3 cut(s)	135, 923, 928
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	706, 883
RsaNI	GTAC	2 cut(s)	705, 882
RseI	CAYNNNNRTG	2 cut(s)	645, 948
SacI	GAGCTC	2 cut(s)	990, 1242
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	368, 1113, 1276
SatI	GCNGC	5 cut(s)	594, 597, 600, 1016, 1019
Sau96I	GGNCC	3 cut(s)	135, 923, 928
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	3 cut(s)	67, 434, 656
ScrFI	CCNGG	3 cut(s)	324, 477, 947
SduI	GDGCHC	3 cut(s)	990, 1143, 1242
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	923
SlaI	CTCGAG	1 cut(s)	989
SmiI	ATTTAAAT	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	645, 948
SmlI	CTYRAG	3 cut(s)	98, 833, 989
SmoI	CTYRAG	3 cut(s)	98, 833, 989
Sse9I	AATT	4 cut(s)	264, 633, 643, 826
SsiI	CCGC	4 cut(s)	519, 1015, 1019, 1122
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	570, 915
SstI	GAGCTC	2 cut(s)	990, 1242
StyD4I	CCNGG	3 cut(s)	322, 475, 945
SwaI	ATTTAAAT	1 cut(s)	369
TaaI	ACNGT	4 cut(s)	120, 859, 886, 962
TaiI	ACGT	1 cut(s)	1082
TaqI	TCGA	4 cut(s)	123, 346, 964, 990
TasI	AATT	4 cut(s)	264, 633, 643, 826
TatI	WGTACW	2 cut(s)	704, 881
TauI	GCSGC	2 cut(s)	1018, 1021
TfiI	GAWTC	7 cut(s)	415, 487, 751, 797, 875, 966, 1053
Tru1I	TTAA	3 cut(s)	368, 1113, 1276
Tru9I	TTAA	3 cut(s)	368, 1113, 1276
TscAI	CASTG	3 cut(s)	85, 215, 891
TseFI	GTSAC	3 cut(s)	888, 902, 1075
TseI	GCWGC	3 cut(s)	593, 596, 599
Tsp45I	GTSAC	3 cut(s)	888, 902, 1075
TspDTI	ATGAA	4 cut(s)	206, 417, 731, 888
TspRI	CASTG	3 cut(s)	85, 215, 891
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	2 cut(s)	633, 826
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	2 cut(s)	606, 1162
XhoI	CTCGAG	1 cut(s)	989
XmnI	GAANNNNTTC	2 cut(s)	186, 414
XspI	CTAG	2 cut(s)	570, 915
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.