Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12076012 .. 12080332

Gene Structure 4321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAATATGGAAAAGGGGGTTTTGCTTTCTTTGAGTCCTCCGGTATCGGATAGCAGCGGAGATCAATATAACACAGCTCTCAAGCCAGCCTCCGCCCAAGTGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAAGAAGAGGATAGAGTTCTAGCAGATGCTGTTGAGAAGTACAATGGCAAAAACTGGAAAAGGATTGCTGAATGTGTTCGTGGAAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTGGTCGCAAAGCAGGGAAATAAAAAATGGTCTGAAATAGCGAAGTCCTTGCCAGGCCGTATAGGCAAACAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAGGAACAGATTCTCATTCAGTCGCATAAAGTCTATGGGAACAAATGGGCTGAAATAGCAAAGTTTTTACCTGGAAGGACTGAAAATTCAATAAAAAACCACTGGAACTGCTCAGTTAAGAAAAAACTAGAACTACGCTCATTCCATTTATCTGATATGGAGAGTCATAAAACACAAGTAGGAATCAGAAAGACAGGTCTTGATCAGATAGCCAACTTCGATAAAAATGTGGAAACCTGTTCTATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGAGCCTGATAAAATCTTCGGACAAAGGAACTCGCAGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGACAAAAACACCAGCTAGAAACCTGTATTATGATAAATCTGCAGCTACATTTGGTCATAAAGTTGAACAACGGAAAGAGTTATATAATAACTATGGCAGGTTGAGAGACTCAAATTGTTTGTCTGATAGACATTCAATCAATGATTGCAGTACTACTCCTTCCGGTGATCTTCGGGGTTCTCCCTATTGTCATGAAAAGCATCAAAACACCATTTACCCTATGAGTTTGTTGAATAATGGCTTAGATGCTTTTGACTACAACAGGAAAGCTGGTAATTTTCTCAAGAAACCAGATCATCCTGTTACAGTTGAGAGAATACATGAATCTTCTAAAGGGTCACAAGTTTATGAGAAAATTAAAGATGCTAGTGGAGCCACCAAGCATTCAGATGCTTCAAACCCTGGTTGCTTGTGCTATAGGCCACTCCAACAAGAGGATTTGAATTATTTTTTGGAAAATGGTGATTTCCCAAGCACAGATGGTTACATCCAGACAGAAATGTTTAGTTCAGTTTCCTTATGCACTCCACCAAGCAAAAAAGGAATTTCTGTTGATTGTAATGATCCAGATTCCGTATTGAAAAGTGCAGCGCAGACTTTTAAGAGTTCACCATCTATCCTAAGAAAACGAAAACATCCATCTTCCAGACAAAGTTTCAAGTCAGAGCATGACCATGTTCCCTCAGAAGAAACGAGCAATGACTCCAGAAACAGCACCAACATTCGAAGTCCATGTGCTGAGACCAAATTCCATTGCATGGCTCGATCAAATGCCAGACAACTTTTTCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

553

Amino Acids

62.37

Weight (kDa)

9.11

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	53 - 99	2.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	56 - 112	2.8e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	106 - 151	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	108 - 166	7.5e-20	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	157 - 199	4.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	160 - 206	1.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	930
AccB7I	CCANNNNNTGG	1 cut(s)	1600
AciI	CCGC	2 cut(s)	81, 117
AclWI	GGATC	2 cut(s)	17, 1400
AcsI	RAATTY	3 cut(s)	574, 1386, 1589
AfaI	GTAC	2 cut(s)	212, 994
AfiI	CCNNNNNNNGG	2 cut(s)	1276, 1600
AgsI	TTSAA	8 cut(s)	579, 908, 978, 1075, 1239, 1285, 1423, 1501
AjnI	CCWGG	3 cut(s)	406, 559, 1243
AjuI	GAANNNNNNNTTGG	4 cut(s)	793, 825, 1277, 1309
AluBI	AGCT	6 cut(s)	101, 827, 857, 887, 1112, 1654
AluI	AGCT	6 cut(s)	101, 827, 857, 887, 1112, 1654
Alw26I	GTCTC	4 cut(s)	139, 942, 1577, 1650
AlwI	GGATC	2 cut(s)	17, 1400
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	136, 409, 1262
ApeKI	GCWGC	3 cut(s)	78, 884, 1430
ApoI	RAATTY	3 cut(s)	574, 1386, 1589
ArsI	GACNNNNNNTTYG	2 cut(s)	947, 979
AseI	ATTAAT	1 cut(s)	735
Asp700I	GAANNNNTTC	2 cut(s)	246, 498
AspLEI	GCGC	1 cut(s)	1435
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	291, 1019, 1316, 1443
AsuII	TTCGAA	1 cut(s)	1567
BarI	GAAGNNNNNNTAC	2 cut(s)	985, 1017
BbvI	GCAGC	3 cut(s)	90, 896, 1442
BccI	CCATC	3 cut(s)	1316, 1462, 1489
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	3 cut(s)	408, 561, 1245
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	4 cut(s)	139, 942, 1577, 1650
BfaI	CTAG	4 cut(s)	191, 617, 858, 1209
BfmI	CTRYAG	2 cut(s)	882, 1258
BfuAI	ACCTGC	1 cut(s)	930
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	79, 885, 1431
BlsI	GCNGC	3 cut(s)	80, 886, 1432
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	3 cut(s)	408, 561, 1245
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	1216
BmrFI	CCNGG	3 cut(s)	408, 561, 1245
BmsI	GCATC	5 cut(s)	187, 1051, 1078, 1195, 1222
BpmI	CTGGAG	1 cut(s)	1531
Bpu14I	TTCGAA	1 cut(s)	1567
BpuEI	CTTGAG	2 cut(s)	89, 1109
BsaI	GGTCTC	1 cut(s)	1577
BsaJI	CCNNGG	1 cut(s)	1243
BsaWI	WCCGGW	2 cut(s)	64, 1004
Bsc4I	CCNNNNNNNGG	2 cut(s)	1276, 1600
Bse1I	ACTGG	2 cut(s)	230, 596
Bse3DI	GCAATG	2 cut(s)	1546, 1594
BseBI	CCWGG	3 cut(s)	408, 561, 1245
BseDI	CCNNGG	1 cut(s)	1243
BseGI	GGATG	3 cut(s)	1138, 1329, 1477
BseLI	CCNNNNNNNGG	2 cut(s)	1276, 1600
BseMI	GCAATG	2 cut(s)	1546, 1594
BseMII	CTCAG	3 cut(s)	615, 1539, 1572
BseNI	ACTGG	2 cut(s)	230, 596
BseRI	GAGGAG	1 cut(s)	1626
BseXI	GCAGC	3 cut(s)	90, 896, 1442
BsgI	GTGCAG	2 cut(s)	852, 1449
BshFI	GGCC	3 cut(s)	138, 411, 1264
BsiSI	CCGG	2 cut(s)	65, 1005
BslI	CCNNNNNNNGG	2 cut(s)	1276, 1600
BsmAI	GTCTC	4 cut(s)	139, 942, 1577, 1650
BsmBI	CGTCTC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	3 cut(s)	138, 411, 1264
Bso31I	GGTCTC	1 cut(s)	1577
Bsp119I	TTCGAA	1 cut(s)	1567
BspACI	CCGC	2 cut(s)	81, 117
BspANI	GGCC	3 cut(s)	138, 411, 1264
BspCNI	CTCAG	3 cut(s)	614, 1538, 1573
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	1 cut(s)	1216
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	1 cut(s)	930
BspPI	GGATC	2 cut(s)	17, 1400
BspT104I	TTCGAA	1 cut(s)	1567
BspTNI	GGTCTC	1 cut(s)	1577
BsrDI	GCAATG	2 cut(s)	1546, 1594
BsrI	ACTGG	2 cut(s)	230, 596
BssECI	CCNNGG	1 cut(s)	1243
Bst2UI	CCWGG	3 cut(s)	408, 561, 1245
Bst4CI	ACNGT	1 cut(s)	1150
Bst6I	CTCTTC	2 cut(s)	171, 483
BstBI	TTCGAA	1 cut(s)	1567
BstC8I	GCNNGC	2 cut(s)	111, 284
BstDEI	CTNAG	7 cut(s)	327, 601, 1084, 1463, 1525, 1581, 1647
BstF5I	GGATG	3 cut(s)	1138, 1329, 1477
BstHHI	GCGC	1 cut(s)	1435
BstMAI	GTCTC	4 cut(s)	139, 942, 1577, 1650
BstMWI	GCNNNNNNNGC	4 cut(s)	279, 417, 545, 1214
BstNI	CCWGG	3 cut(s)	408, 561, 1245
BstSCI	CCNGG	3 cut(s)	406, 559, 1243
BstSFI	CTRYAG	2 cut(s)	882, 1258
BstV1I	GCAGC	3 cut(s)	90, 896, 1442
BsuRI	GGCC	3 cut(s)	138, 411, 1264
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	1138, 1329, 1477
BtsIMutI	CAGTG	2 cut(s)	275, 589
BveI	ACCTGC	1 cut(s)	930
Cac8I	GCNNGC	2 cut(s)	111, 284
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	1 cut(s)	1435
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	211, 993
CviAII	CATG	7 cut(s)	477, 1034, 1163, 1511, 1517, 1575, 1600
CviQI	GTAC	2 cut(s)	211, 993
DdeI	CTNAG	7 cut(s)	327, 601, 1084, 1463, 1525, 1581, 1647
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	171, 483
EarI	CTCTTC	2 cut(s)	171, 483
EciI	GGCGGA	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	1577
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	406, 559, 1243
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	7 cut(s)	480, 1037, 1166, 1514, 1520, 1578, 1603
FatI	CATG	7 cut(s)	476, 1033, 1162, 1510, 1516, 1574, 1599
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	3 cut(s)	79, 885, 1431
FokI	GGATG	3 cut(s)	1125, 1316, 1464
Fsp4HI	GCNGC	3 cut(s)	79, 885, 1431
FspBI	CTAG	4 cut(s)	191, 617, 858, 1209
GlaI	GCGC	1 cut(s)	1434
GluI	GCNGC	3 cut(s)	79, 885, 1431
GsuI	CTGGAG	1 cut(s)	1531
HaeIII	GGCC	3 cut(s)	138, 411, 1264
HapII	CCGG	2 cut(s)	65, 1005
HhaI	GCGC	1 cut(s)	1435
Hin1II	CATG	7 cut(s)	480, 1037, 1166, 1514, 1520, 1578, 1603
Hin6I	GCGC	1 cut(s)	1433
HinP1I	GCGC	1 cut(s)	1433
HindIII	AAGCTT	1 cut(s)	1652
HinfI	GANTC	8 cut(s)	58, 499, 652, 672, 950, 1166, 1412, 1544
HpaII	CCGG	2 cut(s)	65, 1005
HphI	GGTGA	4 cut(s)	291, 1019, 1316, 1443
Hpy166II	GTNNAC	1 cut(s)	1451
Hpy8I	GTNNAC	1 cut(s)	1451
HpyAV	CCTTC	4 cut(s)	284, 558, 762, 1011
HpyCH4III	ACNGT	1 cut(s)	1150
HpyCH4V	TGCA	8 cut(s)	7, 476, 833, 884, 990, 1365, 1430, 1599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	279, 417, 545, 1214
HpyF3I	CTNAG	7 cut(s)	327, 601, 1084, 1463, 1525, 1581, 1647
Hsp92II	CATG	7 cut(s)	480, 1037, 1166, 1514, 1520, 1578, 1603
HspAI	GCGC	1 cut(s)	1433
Ksp22I	TGATCA	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	824, 1214
Lsp1109I	GCAGC	3 cut(s)	90, 896, 1442
LweI	GCATC	5 cut(s)	187, 1051, 1078, 1195, 1222
MaeI	CTAG	4 cut(s)	191, 617, 858, 1209
MaeIII	GTNAC	3 cut(s)	1144, 1179, 1325
MluCI	AATT	8 cut(s)	348, 574, 955, 1117, 1197, 1285, 1386, 1589
MlyI	GAGTC	4 cut(s)	67, 661, 944, 1538
MmeI	TCCRAC	1 cut(s)	1294
MroXI	GAANNNNTTC	2 cut(s)	246, 498
MseI	TTAA	6 cut(s)	312, 452, 606, 735, 1200, 1443
MslI	CAYNNNNRTG	2 cut(s)	1230, 1515
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	2 cut(s)	65, 1005
MspR9I	CCNGG	3 cut(s)	408, 561, 1245
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	3 cut(s)	408, 561, 1245
MwoI	GCNNNNNNNGC	4 cut(s)	279, 417, 545, 1214
NlaIII	CATG	7 cut(s)	480, 1037, 1166, 1514, 1520, 1578, 1603
NlaIV	GGNNCC	1 cut(s)	1216
NmuCI	GTSAC	1 cut(s)	1179
NspV	TTCGAA	1 cut(s)	1567
PagI	TCATGA	1 cut(s)	1033
PctI	GAATGC	1 cut(s)	1225
PdmI	GAANNNNTTC	2 cut(s)	246, 498
PfeI	GAWTC	4 cut(s)	499, 672, 1166, 1412
PflMI	CCANNNNNTGG	1 cut(s)	1600
PkrI	GCNGC	3 cut(s)	80, 886, 1432
PleI	GAGTC	4 cut(s)	66, 660, 944, 1538
PpsI	GAGTC	4 cut(s)	66, 660, 944, 1538
PshBI	ATTAAT	1 cut(s)	735
Psp6I	CCWGG	3 cut(s)	406, 559, 1243
PspGI	CCWGG	3 cut(s)	406, 559, 1243
PspN4I	GGNNCC	1 cut(s)	1216
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	212, 994
RsaNI	GTAC	2 cut(s)	211, 993
RseI	CAYNNNNRTG	2 cut(s)	1230, 1515
SaqAI	TTAA	6 cut(s)	312, 452, 606, 735, 1200, 1443
SatI	GCNGC	3 cut(s)	79, 885, 1431
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	4 cut(s)	67, 661, 944, 1538
ScrFI	CCNGG	3 cut(s)	408, 561, 1245
SfaNI	GCATC	5 cut(s)	187, 1051, 1078, 1195, 1222
SfcI	CTRYAG	2 cut(s)	882, 1258
SfuI	TTCGAA	1 cut(s)	1567
SmiI	ATTTAAAT	1 cut(s)	453
SmiMI	CAYNNNNRTG	2 cut(s)	1230, 1515
SmlI	CTYRAG	2 cut(s)	104, 1124
SmoI	CTYRAG	2 cut(s)	104, 1124
Sse9I	AATT	8 cut(s)	348, 574, 955, 1117, 1197, 1285, 1386, 1589
SsiI	CCGC	2 cut(s)	81, 117
SspMI	CTAG	4 cut(s)	191, 617, 858, 1209
StyD4I	CCNGG	3 cut(s)	406, 559, 1243
SwaI	ATTTAAAT	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	1150
TaqI	TCGA	4 cut(s)	430, 708, 1567, 1606
TasI	AATT	8 cut(s)	348, 574, 955, 1117, 1197, 1285, 1386, 1589
TatI	WGTACW	2 cut(s)	210, 992
TfiI	GAWTC	4 cut(s)	499, 672, 1166, 1412
Tru1I	TTAA	6 cut(s)	312, 452, 606, 735, 1200, 1443
Tru9I	TTAA	6 cut(s)	312, 452, 606, 735, 1200, 1443
TscAI	CASTG	2 cut(s)	275, 596
TseFI	GTSAC	1 cut(s)	1179
TseI	GCWGC	3 cut(s)	78, 884, 1430
Tsp45I	GTSAC	1 cut(s)	1179
TspDTI	ATGAA	4 cut(s)	266, 501, 1050, 1179
TspGWI	ACGGA	2 cut(s)	928, 1405
TspRI	CASTG	2 cut(s)	275, 596
Van91I	CCANNNNNTGG	1 cut(s)	1600
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	3 cut(s)	574, 1386, 1589
XmnI	GAANNNNTTC	2 cut(s)	246, 498
XspI	CTAG	4 cut(s)	191, 617, 858, 1209
ZrmI	AGTACT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.