Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

22624611 .. 22627384

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGAAGATGATCTAATAATTGAGTTGGTAGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTCATTGAGTCGCATAAAGCCTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAACCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATTGGATAGCCAACTTCGATAAAAATGTGGAAACCTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTCCAGATAATATGATCAAATCACCACCTAGTAATCTTTATTACGATAGAGCTGCAGCTGCATATGGTCTAAATGTTGAACGACGGAAAGAAATTTATCATAACTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAGCAATCAATCAAAGCTTGCACTACTCCTTCCTGTGATCTTTGGGGTTTTCCCTATTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATGGCCCAGCTTCTTTTGACTACAATAGAGGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCTTGTAAAGTATCACAAGCTTATGAGGAAACTAAAGATGCTGGTGGAGCTACTGAGCATTCAGAGGCTTCAAACCCTGGTTGCTTGTGCTATAGGCCACTCCAGCAAGAGGATTTGAACTATTTTTTAAAAAATGGTGAATTCCCAAGCACAGATAGTTACATCCAGACAGCATTTAGTTCTGTTTCCTTATGCACTCCACCAAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCAGATTCCGCATTGAGAAGTGCAGCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCATCACTATGTCATCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCCTCAACATTTTAAGTCCATGTGGTGAGACAAAATTCCATTGCATGGCTCGATCAAATGCCAAAAAACTTTTCCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

505

Amino Acids

57.36

Weight (kDa)

9.37

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 56	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 60	1.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	61 - 100	5.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 114	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	106 - 148	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	109 - 155	1.8e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	792
AccB7I	CCANNNNNTGG	1 cut(s)	1459
AccII	CGCG	1 cut(s)	669
AciI	CCGC	3 cut(s)	536, 669, 1275
AclWI	GGATC	2 cut(s)	631, 1259
AcsI	RAATTY	6 cut(s)	57, 421, 783, 976, 1166, 1448
AfiI	CCNNNNNNNGG	2 cut(s)	1135, 1459
AgsI	TTSAA	7 cut(s)	182, 426, 594, 770, 934, 1098, 1144
AjnI	CCWGG	3 cut(s)	253, 406, 1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	655, 687, 1469, 1501
Alw26I	GTCTC	5 cut(s)	10, 804, 1361, 1436, 1509
AlwI	GGATC	2 cut(s)	631, 1259
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	7, 256, 940, 1121
ApeKI	GCWGC	4 cut(s)	743, 746, 749, 1289
ApoI	RAATTY	6 cut(s)	57, 421, 783, 976, 1166, 1448
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	2 cut(s)	117, 345
AspS9I	GGNCC	3 cut(s)	8, 692, 941
AsuHPI	GGTGA	5 cut(s)	162, 705, 908, 1175, 1451
AvaII	GGWCC	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	1339
BbvI	GCAGC	4 cut(s)	730, 736, 758, 1301
BccI	CCATC	1 cut(s)	1321
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	3 cut(s)	255, 408, 1104
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	5 cut(s)	10, 804, 1361, 1436, 1509
BfaI	CTAG	2 cut(s)	62, 720
BfmI	CTRYAG	2 cut(s)	744, 1117
BfuAI	ACCTGC	1 cut(s)	792
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	4 cut(s)	744, 747, 750, 1290
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	4 cut(s)	745, 748, 751, 1291
Bme1390I	CCNGG	3 cut(s)	255, 408, 1104
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	3 cut(s)	8, 692, 941
BmrFI	CCNGG	3 cut(s)	255, 408, 1104
BmsI	GCATC	3 cut(s)	58, 1054, 1378
BpiI	GAAGAC	1 cut(s)	1339
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	2 cut(s)	1112, 1390
Bpu1102I	GCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	968
BsaJI	CCNNGG	1 cut(s)	1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	1135, 1459
Bse1I	ACTGG	2 cut(s)	101, 443
Bse3DI	GCAATG	2 cut(s)	278, 1453
BseBI	CCWGG	3 cut(s)	255, 408, 1104
BseDI	CCNNGG	1 cut(s)	1102
BseGI	GGATG	2 cut(s)	1188, 1336
BseLI	CCNNNNNNNGG	2 cut(s)	1135, 1459
BseMI	GCAATG	2 cut(s)	278, 1453
BseMII	CTCAG	4 cut(s)	462, 1071, 1377, 1398
BseNI	ACTGG	2 cut(s)	101, 443
BseRI	GAGGAG	2 cut(s)	981, 1485
BseXI	GCAGC	4 cut(s)	730, 736, 758, 1301
BseYI	CCCAGC	1 cut(s)	943
BsgI	GTGCAG	1 cut(s)	1308
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	4 cut(s)	9, 258, 942, 1123
BslI	CCNNNNNNNGG	2 cut(s)	1135, 1459
BsmAI	GTCTC	5 cut(s)	10, 804, 1361, 1436, 1509
BsmBI	CGTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	1084
BsnI	GGCC	4 cut(s)	9, 258, 942, 1123
Bsp1720I	GCTNAGC	1 cut(s)	831
BspACI	CCGC	3 cut(s)	536, 669, 1275
BspANI	GGCC	4 cut(s)	9, 258, 942, 1123
BspCNI	CTCAG	4 cut(s)	461, 1072, 1376, 1397
BspFNI	CGCG	1 cut(s)	669
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	631, 1259
BsrDI	GCAATG	2 cut(s)	278, 1453
BsrI	ACTGG	2 cut(s)	101, 443
BssECI	CCNNGG	1 cut(s)	1102
Bst2UI	CCWGG	3 cut(s)	255, 408, 1104
Bst4CI	ACNGT	1 cut(s)	1009
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	155, 269, 850
BstDEI	CTNAG	7 cut(s)	448, 831, 1080, 1322, 1363, 1384, 1506
BstF5I	GGATG	2 cut(s)	1188, 1336
BstFNI	CGCG	1 cut(s)	669
BstMAI	GTCTC	5 cut(s)	10, 804, 1361, 1436, 1509
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 264, 392, 749, 1073, 1129
BstNI	CCWGG	3 cut(s)	255, 408, 1104
BstSCI	CCNGG	3 cut(s)	253, 406, 1102
BstSFI	CTRYAG	2 cut(s)	744, 1117
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	4 cut(s)	730, 736, 758, 1301
BstV2I	GAAGAC	1 cut(s)	1339
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	9, 258, 942, 1123
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	1188, 1336
BtsIMutI	CAGTG	2 cut(s)	146, 436
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	3 cut(s)	155, 269, 850
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	8, 692, 941
CviAII	CATG	5 cut(s)	324, 893, 1022, 1434, 1459
DdeI	CTNAG	7 cut(s)	448, 831, 1080, 1322, 1363, 1384, 1506
DraI	TTTAAA	2 cut(s)	300, 1155
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRI	GAATTC	2 cut(s)	57, 1166
EcoRII	CCWGG	3 cut(s)	253, 406, 1102
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	5 cut(s)	327, 896, 1025, 1437, 1462
FatI	CATG	5 cut(s)	323, 892, 1021, 1433, 1458
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	744, 747, 750, 1290
FokI	GGATG	2 cut(s)	1175, 1323
Fsp4HI	GCNGC	4 cut(s)	744, 747, 750, 1290
FspBI	CTAG	2 cut(s)	62, 720
GluI	GCNGC	4 cut(s)	744, 747, 750, 1290
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	2 cut(s)	1112, 1390
HaeIII	GGCC	4 cut(s)	9, 258, 942, 1123
Hin1II	CATG	5 cut(s)	327, 896, 1025, 1437, 1462
HindIII	AAGCTT	4 cut(s)	398, 846, 1044, 1511
HinfI	GANTC	7 cut(s)	346, 356, 519, 812, 901, 1025, 1271
HphI	GGTGA	5 cut(s)	162, 705, 908, 1175, 1451
Hpy188I	TCNGA	6 cut(s)	235, 524, 1090, 1366, 1387, 1509
Hpy99I	CGWCG	1 cut(s)	777
HpyAV	CCTTC	4 cut(s)	155, 405, 624, 870
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4V	TGCA	7 cut(s)	323, 746, 752, 852, 1221, 1289, 1458
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 264, 392, 749, 1073, 1129
HpyF3I	CTNAG	7 cut(s)	448, 831, 1080, 1322, 1363, 1384, 1506
Hsp92II	CATG	5 cut(s)	327, 896, 1025, 1437, 1462
Ksp22I	TGATCA	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	686, 968, 1073
Lsp1109I	GCAGC	4 cut(s)	730, 736, 758, 1301
LweI	GCATC	3 cut(s)	58, 1054, 1378
MaeI	CTAG	2 cut(s)	62, 720
MaeIII	GTNAC	1 cut(s)	1184
MboII	GAAGA	6 cut(s)	59, 194, 347, 350, 1344, 1400
MflI	RGATCY	1 cut(s)	636
MlyI	GAGTC	3 cut(s)	365, 528, 806
MroXI	GAANNNNTTC	2 cut(s)	117, 345
MseI	TTAA	6 cut(s)	299, 453, 597, 1154, 1302, 1427
MslI	CAYNNNNRTG	2 cut(s)	795, 1374
MspA1I	CMGCKG	1 cut(s)	749
MspR9I	CCNGG	3 cut(s)	255, 408, 1104
Mva1269I	GAATGC	1 cut(s)	1084
MvaI	CCWGG	3 cut(s)	255, 408, 1104
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	150, 264, 392, 749, 1073, 1129
NdeI	CATATG	1 cut(s)	754
NlaIII	CATG	5 cut(s)	327, 896, 1025, 1437, 1462
PctI	GAATGC	1 cut(s)	1084
PdmI	GAANNNNTTC	2 cut(s)	117, 345
PfeI	GAWTC	4 cut(s)	346, 901, 1025, 1271
PflFI	GACNNNGTC	2 cut(s)	546, 1353
PflMI	CCANNNNNTGG	1 cut(s)	1459
PkrI	GCNGC	4 cut(s)	745, 748, 751, 1291
PleI	GAGTC	3 cut(s)	364, 527, 806
PpsI	GAGTC	3 cut(s)	364, 527, 806
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	253, 406, 1102
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	3 cut(s)	253, 406, 1102
PspPI	GGNCC	3 cut(s)	8, 692, 941
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	636
PsyI	GACNNNGTC	2 cut(s)	546, 1353
PvuII	CAGCTG	1 cut(s)	749
RseI	CAYNNNNRTG	2 cut(s)	795, 1374
SaqAI	TTAA	6 cut(s)	299, 453, 597, 1154, 1302, 1427
SatI	GCNGC	4 cut(s)	744, 747, 750, 1290
Sau96I	GGNCC	3 cut(s)	8, 692, 941
SchI	GAGTC	3 cut(s)	365, 528, 806
ScrFI	CCNGG	3 cut(s)	255, 408, 1104
SfaNI	GCATC	3 cut(s)	58, 1054, 1378
SfcI	CTRYAG	2 cut(s)	744, 1117
SinI	GGWCC	1 cut(s)	692
SmiI	ATTTAAAT	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	795, 1374
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
SsiI	CCGC	3 cut(s)	536, 669, 1275
SspMI	CTAG	2 cut(s)	62, 720
StyD4I	CCNGG	3 cut(s)	253, 406, 1102
SwaI	ATTTAAAT	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	1009
TaqI	TCGA	4 cut(s)	75, 277, 570, 1465
TfiI	GAWTC	4 cut(s)	346, 901, 1025, 1271
Tru1I	TTAA	6 cut(s)	299, 453, 597, 1154, 1302, 1427
Tru9I	TTAA	6 cut(s)	299, 453, 597, 1154, 1302, 1427
TscAI	CASTG	2 cut(s)	146, 443
TseI	GCWGC	4 cut(s)	743, 746, 749, 1289
TspDTI	ATGAA	4 cut(s)	137, 348, 881, 1038
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	2 cut(s)	146, 443
Tth111I	GACNNNGTC	2 cut(s)	546, 1353
Van91I	CCANNNNNTGG	1 cut(s)	1459
VpaK11BI	GGWCC	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	6 cut(s)	57, 421, 783, 976, 1166, 1448
XmnI	GAANNNNTTC	2 cut(s)	117, 345
XspI	CTAG	2 cut(s)	62, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.