Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00664

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

26939 .. 33960

Gene Structure 7022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAACATGGAAAAGGGGGTTTTGCTTTCTTTGAGTCCTCCGGTATCGGATAGCAGTGGAGATAACACAGCTCTCAAGCCAGCCTCTGCTCAACTGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGTGATGGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAAACTGCTGGACAAATGAAGAAGAAAAGATTCTCATTGAGTCGCATAAAAAAAAATTAGAGCTACGCTCATTCCATACATCTAATATGGAAAGTCATAAAATAAAAGCAGGTGTCAGAAAGACAAAGGCGGTAAGACAAACCAACTTCGATAAAAATGTGGAAACCTGTTCAATTAATCTTGATCTGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGTTGGTGCAGATAATATGATCAAATCACCACCTAGTAACCTTTATTACGATAGAGCTGCAGCTGCATGTGGTCTAAATATTGAACAACGGGAAGAAATTTATCATAATTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCTATCAAAGCTTGCAGTACTCCTTCCTGTGATCTTTGGGGTTTTCCCTTTTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATGGCTCAGATTCTTTTGACTACAATAGAGGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCTTGTACAGTGTCACAAGCTTATGAGAAAACTAAAGATGCTGGTGGAGCTACTGAGCATTTAGAGGCTTCAAATTCTGGTTGCTTGTGCTATAGCACAGATAGTTACATCCATACAGCATTTAGTTCAGCTTCCTTGTACACTCCACCAAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCAGATTCCGCATTGAGAAGTGCATCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCTTCACTATGTCACCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCACTACTAGAAAAACATGTACTTCCACACGGATGAATTCTGTTCCATGTGGTGAGACAAAATTCCAATGCACGGCTCGATCAAATGCCAAAAAACTTTTCCTCTCTCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

488

Amino Acids

54.92

Weight (kDa)

9.42

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 97	2.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 109	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	112 - 143	8.2e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	112 - 158	1e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc36I	ACCTGC	2 cut(s)	545, 783
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	575, 660, 1212
AclWI	GGATC	2 cut(s)	17, 1196
AcsI	RAATTY	6 cut(s)	180, 774, 967, 1090, 1387, 1412
AfaI	GTAC	4 cut(s)	847, 1024, 1157, 1372
AfiI	CCNNNNNNNGG	1 cut(s)	1423
AflIII	ACRYGT	1 cut(s)	1367
AgsI	TTSAA	4 cut(s)	618, 761, 925, 1089
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	4 cut(s)	646, 678, 1433, 1465
Alw26I	GTCTC	4 cut(s)	133, 795, 1298, 1400
AlwI	GGATC	2 cut(s)	17, 1196
AlwNI	CAGNNNCTG	2 cut(s)	110, 194
AoxI	GGCC	2 cut(s)	130, 385
ApeKI	GCWGC	3 cut(s)	734, 737, 740
ApoI	RAATTY	6 cut(s)	180, 774, 967, 1090, 1387, 1412
AseI	ATTAAT	1 cut(s)	621
Asp700I	GAANNNNTTC	2 cut(s)	240, 474
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	6 cut(s)	285, 340, 696, 899, 1309, 1415
BbsI	GAAGAC	1 cut(s)	1276
BbvI	GCAGC	3 cut(s)	721, 727, 749
BccI	CCATC	2 cut(s)	325, 1258
BceAI	ACGGC	2 cut(s)	372, 1440
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	4 cut(s)	133, 795, 1298, 1400
BfaI	CTAG	3 cut(s)	185, 711, 1359
BfmI	CTRYAG	2 cut(s)	735, 1108
BfuAI	ACCTGC	2 cut(s)	545, 783
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	3 cut(s)	735, 738, 741
BlsI	GCNGC	3 cut(s)	736, 739, 742
BmcAI	AGTACT	1 cut(s)	847
Bme1390I	CCNGG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	3 cut(s)	181, 1045, 1235
BpiI	GAAGAC	1 cut(s)	1276
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	1327
BpuEI	CTTGAG	2 cut(s)	83, 959
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	1423
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	384
BseGI	GGATG	3 cut(s)	1125, 1273, 1389
BseLI	CCNNNNNNNGG	1 cut(s)	1423
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	5 cut(s)	110, 948, 1062, 1314, 1335
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	972, 1449
BseXI	GCAGC	3 cut(s)	721, 727, 749
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	2 cut(s)	132, 387
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	1423
BsmAI	GTCTC	4 cut(s)	133, 795, 1298, 1400
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	132, 387
Bsp1407I	TGTACA	2 cut(s)	1022, 1155
Bsp143I	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
BspACI	CCGC	3 cut(s)	575, 660, 1212
BspANI	GGCC	2 cut(s)	132, 387
BspCNI	CTCAG	5 cut(s)	111, 947, 1063, 1313, 1334
BspFNI	CGCG	1 cut(s)	660
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	2 cut(s)	545, 783
BspPI	GGATC	2 cut(s)	17, 1196
BsrDI	GCAATG	1 cut(s)	407
BsrGI	TGTACA	2 cut(s)	1022, 1155
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	1000, 1027
Bst6I	CTCTTC	1 cut(s)	165
BstAUI	TGTACA	2 cut(s)	1022, 1155
BstC8I	GCNNGC	4 cut(s)	105, 278, 398, 841
BstDEI	CTNAG	7 cut(s)	119, 321, 934, 1071, 1259, 1300, 1321
BstF5I	GGATG	3 cut(s)	1125, 1273, 1389
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	9 cut(s)	25, 146, 301, 631, 699, 862, 988, 1204, 1433
BstMAI	GTCTC	4 cut(s)	133, 795, 1298, 1400
BstMBI	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 393, 740, 1064
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	747, 1371
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	735, 1108
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	721, 727, 749
BstV2I	GAAGAC	1 cut(s)	1276
BsuRI	GGCC	2 cut(s)	132, 387
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	1125, 1273, 1389
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 269, 1032
BveI	ACCTGC	2 cut(s)	545, 783
Cac8I	GCNNGC	4 cut(s)	105, 278, 398, 841
CaiI	CAGNNNCTG	2 cut(s)	110, 194
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	4 cut(s)	846, 1023, 1156, 1371
CviAII	CATG	6 cut(s)	31, 744, 884, 1013, 1368, 1398
CviQI	GTAC	4 cut(s)	846, 1023, 1156, 1371
DdeI	CTNAG	7 cut(s)	119, 321, 934, 1071, 1259, 1300, 1321
DpnI	GATC	9 cut(s)	24, 145, 300, 630, 698, 861, 987, 1203, 1432
DpnII	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	180, 1387
EcoRII	CCWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	6 cut(s)	34, 747, 887, 1016, 1371, 1401
FatI	CATG	6 cut(s)	30, 743, 883, 1012, 1367, 1397
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	3 cut(s)	735, 738, 741
FokI	GGATG	3 cut(s)	1112, 1260, 1396
Fsp4HI	GCNGC	3 cut(s)	735, 738, 741
FspBI	CTAG	3 cut(s)	185, 711, 1359
GluI	GCNGC	3 cut(s)	735, 738, 741
GsuI	CTGGAG	1 cut(s)	1327
HaeIII	GGCC	2 cut(s)	132, 387
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	34, 747, 887, 1016, 1371, 1401
HindIII	AAGCTT	2 cut(s)	837, 1035
HinfI	GANTC	8 cut(s)	58, 475, 485, 803, 892, 938, 1016, 1208
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	6 cut(s)	285, 340, 696, 899, 1309, 1415
Hpy166II	GTNNAC	1 cut(s)	1158
Hpy188I	TCNGA	7 cut(s)	73, 364, 563, 633, 937, 1303, 1324
Hpy188III	TCNNGA	8 cut(s)	199, 407, 434, 626, 976, 1205, 1284, 1344
Hpy8I	GTNNAC	1 cut(s)	1158
HpyAV	CCTTC	2 cut(s)	278, 861
HpyCH4III	ACNGT	2 cut(s)	1000, 1027
HpyCH4V	TGCA	7 cut(s)	7, 686, 737, 743, 843, 1226, 1422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 393, 740, 1064
HpyF3I	CTNAG	7 cut(s)	119, 321, 934, 1071, 1259, 1300, 1321
Hsp92II	CATG	6 cut(s)	34, 747, 887, 1016, 1371, 1401
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
LmnI	GCTCC	2 cut(s)	959, 1064
Lsp1109I	GCAGC	3 cut(s)	721, 727, 749
LweI	GCATC	3 cut(s)	181, 1045, 1235
MaeI	CTAG	3 cut(s)	185, 711, 1359
MaeIII	GTNAC	4 cut(s)	713, 1029, 1121, 1315
MalI	GATC	9 cut(s)	24, 145, 300, 630, 698, 861, 987, 1203, 1432
MboI	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
MboII	GAAGA	6 cut(s)	182, 476, 479, 782, 1281, 1337
MlyI	GAGTC	3 cut(s)	67, 494, 797
MroXI	GAANNNNTTC	2 cut(s)	240, 474
MseI	TTAA	4 cut(s)	306, 428, 621, 1239
MslI	CAYNNNNRTG	2 cut(s)	786, 1382
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	273, 393, 740, 1064
NdeII	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
NlaIII	CATG	6 cut(s)	34, 747, 887, 1016, 1371, 1401
NmuCI	GTSAC	2 cut(s)	1029, 1315
NspI	RCATGY	2 cut(s)	747, 1371
PaqCI	CACCTGC	1 cut(s)	545
PciI	ACATGT	1 cut(s)	1367
PdmI	GAANNNNTTC	2 cut(s)	240, 474
PfeI	GAWTC	5 cut(s)	475, 892, 938, 1016, 1208
PflFI	GACNNNGTC	1 cut(s)	1290
PkrI	GCNGC	3 cut(s)	736, 739, 742
PleI	GAGTC	3 cut(s)	66, 493, 797
PpsI	GAGTC	3 cut(s)	66, 493, 797
PscI	ACATGT	1 cut(s)	1367
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	2 cut(s)	110, 194
PsyI	GACNNNGTC	1 cut(s)	1290
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	4 cut(s)	847, 1024, 1157, 1372
RsaNI	GTAC	4 cut(s)	846, 1023, 1156, 1371
RseI	CAYNNNNRTG	2 cut(s)	786, 1382
SaqAI	TTAA	4 cut(s)	306, 428, 621, 1239
SatI	GCNGC	3 cut(s)	735, 738, 741
Sau3AI	GATC	9 cut(s)	22, 143, 298, 628, 696, 859, 985, 1201, 1430
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	3 cut(s)	67, 494, 797
ScrFI	CCNGG	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	181, 1045, 1235
SfcI	CTRYAG	2 cut(s)	735, 1108
SmiI	ATTTAAAT	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	786, 1382
SmlI	CTYRAG	2 cut(s)	98, 974
SmoI	CTYRAG	2 cut(s)	98, 974
SsiI	CCGC	3 cut(s)	575, 660, 1212
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	3 cut(s)	185, 711, 1359
StyD4I	CCNGG	1 cut(s)	382
SwaI	ATTTAAAT	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	1000, 1027
TaqI	TCGA	4 cut(s)	198, 406, 594, 1429
TatI	WGTACW	4 cut(s)	845, 1022, 1155, 1370
TfiI	GAWTC	5 cut(s)	475, 892, 938, 1016, 1208
Tru1I	TTAA	4 cut(s)	306, 428, 621, 1239
Tru9I	TTAA	4 cut(s)	306, 428, 621, 1239
TscAI	CASTG	3 cut(s)	85, 269, 1032
TseFI	GTSAC	2 cut(s)	1029, 1315
TseI	GCWGC	3 cut(s)	734, 737, 740
Tsp45I	GTSAC	2 cut(s)	1029, 1315
TspDTI	ATGAA	5 cut(s)	260, 477, 872, 1029, 1400
TspGWI	ACGGA	1 cut(s)	1396
TspRI	CASTG	3 cut(s)	85, 269, 1032
Tth111I	GACNNNGTC	1 cut(s)	1290
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	6 cut(s)	180, 774, 967, 1090, 1387, 1412
XceI	RCATGY	2 cut(s)	747, 1371
XmnI	GAANNNNTTC	2 cut(s)	240, 474
XspI	CTAG	3 cut(s)	185, 711, 1359
ZrmI	AGTACT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.