Rw1G020030

Uncharacterised conserved protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007632
Physical Location & Seq
Forward (+)
43443408 .. 43447088
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020030.1

Sequence Viewer

Length: 456 bp
ATGGGACAGGTGTGGGGATGGGGATATGGAGGTGAAGGGCAGCTTGGTGTCCTCCCCTCATCTTATACCTTGTATCAAGCCTCATACCAGCAGTCTCGTGAATGCCTTCAGAAGGAACTTGAAGGATGCTGGTTTGATCATATCCCAGAGGTCATGAGAAATGAAGGAGCAGGCTGTAAAGCAGTTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTCCACCTCTGGCAGAAACTCATCTCACTTGATCTTGTTAAAGGATTTTGGTATAAAGAGCAACATGCGAAGCCAGCCGAAGGAGGAGCGAGTGTGAAGGCCAAGATTAGGAAGATGGAAAAGTTCGTCTCCACCTCACGCGCCACCTGCGACATCGACAACCCATTCTCCACCCTCCACCACCTCACCACCCCATCCTCATTACTCACCAACACCAGCAACGTCGCAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FPL

Protein Analysis

151

Amino Acids

16.9

Weight (kDa)

6.51

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccII CGCG 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 112, 299, 327
AgsI TTSAA 2 cut(s) 122, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 99, 352
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 40
Asp700I GAANNNNTTC 2 cut(s) 105, 192
AspLEI GCGC 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 44, 397, 418
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 1 cut(s) 52
BccI CCATC 3 cut(s) 12, 328, 421
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 99, 352
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmsI GCATC 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 371, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 299, 327
BseGI GGATG 3 cut(s) 23, 131, 413
BseLI CCNNNNNNNGG 3 cut(s) 112, 299, 327
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 320
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 112, 299, 327
BsmAI GTCTC 2 cut(s) 99, 352
BsmBI CGTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 136, 250
BspANI GGCC 1 cut(s) 320
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 374
BssMI GATC 2 cut(s) 136, 250
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 172, 294
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 23, 131, 413
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 2 cut(s) 139, 253
BstMAI GTCTC 2 cut(s) 99, 352
BstMBI GATC 2 cut(s) 136, 250
BstMWI GCNNNNNNNGC 2 cut(s) 293, 366
BstNSI RCATGY 1 cut(s) 287
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 23, 131, 413
BtsIMutI CAGTG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 172, 294
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 362
CviAII CATG 2 cut(s) 154, 284
CviJI RGCY 6 cut(s) 43, 80, 174, 292, 296, 320
CviKI_1 RGCY 6 cut(s) 43, 80, 174, 292, 296, 320
DpnI GATC 2 cut(s) 138, 252
DpnII GATC 2 cut(s) 136, 250
Eco57I CTGAAG 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 2 cut(s) 157, 287
FaiI YATR 7 cut(s) 27, 66, 85, 141, 155, 273, 285
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 153, 283
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 3 cut(s) 30, 138, 400
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 320
HhaI GCGC 1 cut(s) 362
Hin1II CATG 2 cut(s) 157, 287
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HphI GGTGA 3 cut(s) 44, 397, 418
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 98, 154
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 7 cut(s) 29, 106, 116, 116, 158, 293, 310
HpyCH4IV ACGT 1 cut(s) 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 366
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 2 cut(s) 157, 287
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 250
LmnI GCTCC 2 cut(s) 167, 305
LpnPI CCDG 8 cut(s) 101, 115, 156, 159, 214, 306, 379, 448
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 441
MalI GATC 2 cut(s) 138, 252
MboI GATC 2 cut(s) 136, 250
MboII GAAGA 1 cut(s) 343
MroXI GAANNNNTTC 2 cut(s) 105, 192
MseI TTAA 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 293, 366
NdeII GATC 2 cut(s) 136, 250
NlaIII CATG 2 cut(s) 157, 287
NspI RCATGY 1 cut(s) 287
PagI TCATGA 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 374
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 2 cut(s) 105, 192
PkrI GCNGC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 136, 250
SfaNI GCATC 1 cut(s) 116
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 375
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 221
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 110
XceI RCATGY 1 cut(s) 287
XmnI GAANNNNTTC 2 cut(s) 105, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.